Wall clock time and date at job start Sun Mar 29 2020 21:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47312 * 2 1 4 4 C 1.36939 * 119.99770 * 275.30552 * 3 2 1 5 5 H 1.07998 * 120.00210 * 37.58549 * 4 3 2 6 6 C 1.38814 * 120.00214 * 217.57921 * 4 3 2 7 7 N 1.31617 * 119.99766 * 21.42419 * 6 4 3 8 8 Si 1.86803 * 120.00149 * 201.42985 * 6 4 3 9 9 H 1.48504 * 109.46862 * 89.99815 * 8 6 4 10 10 H 1.48492 * 109.47008 * 209.99917 * 8 6 4 11 11 H 1.48494 * 109.46879 * 329.99903 * 8 6 4 12 12 C 1.46496 * 120.00252 * 95.31160 * 3 2 1 13 13 C 1.52999 * 109.47006 * 269.99908 * 12 3 2 14 14 C 1.50695 * 109.47606 * 180.02562 * 13 12 3 15 15 C 1.29444 * 117.96729 * 94.73174 * 14 13 12 16 16 C 1.50064 * 124.08069 * 180.75239 * 15 14 13 17 17 C 1.53025 * 110.14473 * 342.87492 * 16 15 14 18 18 C 1.53383 * 108.44142 * 49.43318 * 17 16 15 19 19 C 1.50071 * 117.96265 * 275.00218 * 14 13 12 20 20 H 1.09001 * 109.47381 * 180.02562 * 1 2 3 21 21 H 1.09006 * 109.47004 * 300.00261 * 1 2 3 22 22 H 1.09004 * 109.47074 * 59.99849 * 1 2 3 23 23 H 1.09006 * 109.47004 * 239.99739 * 2 1 3 24 24 H 1.09004 * 109.47074 * 120.00151 * 2 1 3 25 25 H 0.97002 * 120.00029 * 180.02562 * 7 6 4 26 26 H 1.09000 * 109.47381 * 150.00215 * 12 3 2 27 27 H 1.09004 * 109.47477 * 29.99745 * 12 3 2 28 28 H 1.09002 * 109.47322 * 59.99401 * 13 12 3 29 29 H 1.09003 * 109.47142 * 299.99732 * 13 12 3 30 30 H 1.08005 * 117.95539 * 0.73130 * 15 14 13 31 31 H 1.08994 * 109.35878 * 222.66328 * 16 15 14 32 32 H 1.08999 * 109.35513 * 103.07765 * 16 15 14 33 33 H 1.08997 * 109.63730 * 289.74756 * 17 16 15 34 34 H 1.09006 * 109.63903 * 169.11797 * 17 16 15 35 35 H 1.09000 * 109.64931 * 172.87880 * 18 17 16 36 36 H 1.09005 * 109.64304 * 52.24870 * 18 17 16 37 37 H 1.09003 * 109.35785 * 282.79271 * 19 14 13 38 38 H 1.09007 * 109.35555 * 42.51231 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4106 1.9278 -1.9628 6 6 3.2113 2.9288 -1.3729 7 7 4.3027 2.7979 -0.6491 8 14 3.0995 4.2794 -2.6586 9 1 2.5378 5.5068 -2.0396 10 1 4.4551 4.5693 -3.1910 11 1 2.2168 3.8356 -3.7672 12 6 2.3733 2.0326 1.2632 13 6 1.1427 2.7383 1.8365 14 6 1.5078 3.4090 3.1356 15 6 1.8453 4.6582 3.1000 16 6 2.2490 5.4549 4.3059 17 6 1.8049 4.7389 5.5833 18 6 2.2567 3.2754 5.5014 19 6 1.4635 2.5856 4.3894 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 5.0490 3.4030 -0.7830 26 1 3.1617 2.7641 1.0859 27 1 2.7255 1.2833 1.9721 28 1 0.3541 2.0069 2.0138 29 1 0.7904 3.4877 1.1276 30 1 1.8360 5.1580 2.1426 31 1 1.7818 6.4386 4.2619 32 1 3.3326 5.5718 4.3153 33 1 0.7193 4.7830 5.6694 34 1 2.2640 5.2162 6.4492 35 1 2.0632 2.7783 6.4520 36 1 3.3216 3.2329 5.2723 37 1 0.4275 2.4650 4.7061 38 1 1.8978 1.6052 4.1933 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395326215.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:18 Heat of formation + Delta-G solvation = -9.396267 kcal Electronic energy + Delta-G solvation = -15839.475694 eV Core-core repulsion = 13487.955086 eV Total energy + Delta-G solvation = -2351.520608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.69460 -37.79955 -34.09027 -33.75621 -31.58643 -30.80536 -28.83546 -26.17952 -24.29145 -23.68792 -22.21580 -21.75800 -18.65316 -18.32577 -16.97113 -16.49963 -15.83980 -15.54153 -15.22517 -14.86592 -14.54347 -14.14775 -14.09459 -13.57372 -13.48666 -13.13854 -13.06248 -12.85178 -12.80752 -12.62331 -12.36557 -12.26326 -11.98899 -11.63917 -11.52561 -11.43151 -11.11175 -10.89202 -10.50805 -9.58336 -8.54600 -7.81622 -5.46527 1.40037 1.43937 1.45395 1.52227 2.48369 3.22108 3.66187 3.86021 3.99815 4.10055 4.33272 4.42073 4.50614 4.58089 4.60798 4.69739 4.76966 4.78461 4.84166 4.89991 4.98483 5.05155 5.08292 5.09563 5.14515 5.24294 5.29399 5.37606 5.43938 5.50957 5.57365 5.66554 5.82632 5.88563 6.30640 6.46818 7.17324 7.87692 8.40143 9.12108 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023373 B = 0.009031 C = 0.007153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.662922 B = 3099.591335 C = 3913.774088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.604 5.604 4 C -0.267 4.267 5 H 0.052 0.948 6 C -0.035 4.035 7 N -0.916 5.916 8 Si 0.953 3.047 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.268 1.268 12 C 0.162 3.838 13 C -0.091 4.091 14 C -0.115 4.115 15 C -0.180 4.180 16 C -0.084 4.084 17 C -0.113 4.113 18 C -0.117 4.117 19 C -0.079 4.079 20 H 0.068 0.932 21 H 0.047 0.953 22 H 0.034 0.966 23 H 0.030 0.970 24 H 0.045 0.955 25 H 0.251 0.749 26 H 0.058 0.942 27 H 0.023 0.977 28 H 0.059 0.941 29 H 0.033 0.967 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.082 0.918 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.804 1.354 11.831 13.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.326 5.326 4 C -0.398 4.398 5 H 0.070 0.930 6 C -0.233 4.233 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.214 1.214 10 H -0.217 1.217 11 H -0.193 1.193 12 C 0.036 3.964 13 C -0.130 4.130 14 C -0.116 4.116 15 C -0.199 4.199 16 C -0.121 4.121 17 C -0.150 4.150 18 C -0.155 4.155 19 C -0.115 4.115 20 H 0.087 0.913 21 H 0.066 0.934 22 H 0.053 0.947 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.639 1.393 11.794 13.146 hybrid contribution 0.240 0.746 -1.248 1.474 sum -5.399 2.139 10.546 12.039 Atomic orbital electron populations 1.22179 0.97476 1.00832 1.00593 1.20990 0.93720 0.85738 0.98652 1.44069 1.76425 1.09636 1.02432 1.19188 1.04117 1.21599 0.94856 0.92996 1.25848 0.93981 1.03235 1.00227 1.70134 1.03737 1.37947 1.44137 0.85494 0.76781 0.80041 0.79573 1.21353 1.21726 1.19275 1.20709 0.95094 0.95622 0.84965 1.21217 0.99584 0.98793 0.93421 1.21048 0.99727 0.94937 0.95877 1.21960 1.03175 0.95974 0.98757 1.20416 1.00773 0.98397 0.92492 1.21582 1.01351 0.95255 0.96837 1.21612 0.99339 0.96175 0.98361 1.20402 1.01283 0.97852 0.92011 0.91297 0.93438 0.94711 0.95112 0.93646 0.94002 0.92449 0.95880 0.92271 0.94851 0.90956 0.90518 0.91472 0.91481 0.89881 0.89589 0.92850 0.89922 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.47 10.21 71.98 0.73 -4.74 16 2 C 0.13 5.83 6.44 86.38 0.56 6.38 16 3 N -0.60 -31.21 2.43 -702.01 -1.71 -32.92 16 4 C -0.27 -15.14 9.45 84.03 0.79 -14.34 16 5 H 0.05 2.95 7.92 -2.91 -0.02 2.93 16 6 C -0.04 -2.03 4.95 84.86 0.42 -1.60 16 7 N -0.92 -55.02 11.47 21.65 0.25 -54.77 16 8 Si 0.95 45.87 29.61 68.60 2.03 47.90 16 9 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 10 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 12 C 0.16 7.95 5.31 86.38 0.46 8.41 16 13 C -0.09 -3.79 5.55 29.85 0.17 -3.62 16 14 C -0.12 -4.08 5.09 -15.10 -0.08 -4.16 16 15 C -0.18 -6.31 9.37 27.04 0.25 -6.06 16 16 C -0.08 -2.23 6.12 29.66 0.18 -2.05 16 17 C -0.11 -2.43 6.01 30.73 0.18 -2.24 16 18 C -0.12 -2.72 6.01 30.73 0.18 -2.53 16 19 C -0.08 -2.20 5.80 29.66 0.17 -2.03 16 20 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 21 H 0.05 1.67 6.64 -2.38 -0.02 1.66 16 22 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 23 H 0.03 1.37 8.08 -2.38 -0.02 1.36 16 24 H 0.05 1.82 7.83 -2.38 -0.02 1.81 16 25 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 26 H 0.06 3.27 5.52 -2.39 -0.01 3.25 16 27 H 0.02 1.08 7.83 -2.39 -0.02 1.06 16 28 H 0.06 2.31 6.61 -2.39 -0.02 2.29 16 29 H 0.03 1.54 7.80 -2.39 -0.02 1.53 16 30 H 0.07 2.89 7.74 -2.91 -0.02 2.87 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.07 1.38 8.12 -2.39 -0.02 1.36 16 34 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.36 8.12 -2.38 -0.02 1.34 16 37 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 1.88 8.11 -2.38 -0.02 1.86 16 Total: -1.00 -62.89 300.78 5.59 -57.30 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.99 Total: 11.06 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: 4.03 Total: -28.58 kcal Atomic # 7 Polarization: -86.22 SS G_CDS: -1.46 Total: -87.68 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -62.89 5.59 -57.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395326215.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.907 kcal (2) G-P(sol) polarization free energy of solvation -62.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds