Wall clock time and date at job start Sun Mar 29 2020 21:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47118 * 2 1 4 4 C 1.46897 * 111.00016 * 199.67563 * 3 2 1 5 5 C 1.50705 * 109.46940 * 66.04430 * 4 3 2 6 6 H 1.07995 * 120.00113 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00169 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99690 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47184 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47221 * 120.00044 * 9 7 5 12 12 H 1.48494 * 109.47130 * 240.00274 * 9 7 5 13 13 C 1.46901 * 110.99779 * 75.72552 * 3 2 1 14 14 C 1.53002 * 109.46696 * 199.72576 * 13 3 2 15 15 H 1.08999 * 109.64286 * 303.97230 * 14 13 3 16 16 C 1.53024 * 109.64514 * 64.39465 * 14 13 3 17 17 C 1.50066 * 110.14577 * 169.12011 * 16 14 13 18 18 C 1.29438 * 124.07726 * 342.86809 * 17 16 14 19 19 C 1.50072 * 124.07723 * 0.48951 * 18 17 16 20 20 C 1.53030 * 110.13756 * 342.83611 * 19 18 17 21 21 H 1.09002 * 109.47085 * 174.73888 * 1 2 3 22 22 H 1.08999 * 109.46930 * 294.73424 * 1 2 3 23 23 H 1.08997 * 109.47167 * 54.73896 * 1 2 3 24 24 H 1.09001 * 109.47143 * 239.99758 * 2 1 3 25 25 H 1.08997 * 109.47323 * 120.00240 * 2 1 3 26 26 H 1.08999 * 109.47172 * 186.04555 * 4 3 2 27 27 H 1.09001 * 109.47390 * 306.05255 * 4 3 2 28 28 H 0.97001 * 119.99686 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47363 * 79.72601 * 13 3 2 30 30 H 1.08996 * 109.47071 * 319.71991 * 13 3 2 31 31 H 1.09002 * 109.35506 * 289.32715 * 16 14 13 32 32 H 1.09003 * 109.35363 * 49.04960 * 16 14 13 33 33 H 1.07999 * 117.96041 * 162.89295 * 17 16 14 34 34 H 1.08002 * 117.96465 * 180.47222 * 18 17 16 35 35 H 1.08999 * 109.35171 * 103.05407 * 19 18 17 36 36 H 1.08994 * 109.35938 * 222.77464 * 19 18 17 37 37 H 1.09004 * 109.65791 * 289.77557 * 20 19 18 38 38 H 1.09004 * 109.63883 * 169.13613 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4126 1.4509 -0.4617 5 6 3.4808 1.0464 -1.9119 6 1 2.5794 0.7687 -2.4380 7 6 4.6937 1.0320 -2.5674 8 7 5.7913 1.3707 -1.9269 9 14 4.7781 0.5314 -4.3650 10 1 3.4147 0.1996 -4.8510 11 1 5.3290 1.6539 -5.1661 12 1 5.6575 -0.6566 -4.5072 13 6 1.8763 1.9940 1.3291 14 6 1.9174 3.5179 1.1989 15 1 2.8376 3.8181 0.6977 16 6 0.7107 3.9977 0.3893 17 6 0.5908 5.4911 0.4762 18 6 1.1801 6.2150 1.3729 19 6 2.0742 5.6633 2.4445 20 6 1.8519 4.1564 2.5920 21 1 -0.3633 -1.0233 -0.0942 22 1 -0.3633 0.4300 0.9334 23 1 -0.3633 0.5933 -0.8391 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.7844 2.4695 -0.3507 27 1 4.0252 0.7735 0.1334 28 1 6.6446 1.3609 -2.3881 29 1 2.6924 1.6621 1.9708 30 1 0.9245 1.6923 1.7663 31 1 0.8358 3.7053 -0.6533 32 1 -0.1956 3.5407 0.7865 33 1 -0.0259 5.9929 -0.2546 34 1 1.0187 7.2826 1.3481 35 1 3.1146 5.8510 2.1790 36 1 1.8487 6.1541 3.3912 37 1 0.8727 3.9718 3.0340 38 1 2.6297 3.7317 3.2267 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000402282681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:18 Heat of formation + Delta-G solvation = -4.894875 kcal Electronic energy + Delta-G solvation = -15805.444416 eV Core-core repulsion = 13454.119004 eV Total energy + Delta-G solvation = -2351.325413 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.61874 -36.38319 -32.64130 -31.64795 -30.41760 -29.58444 -26.85538 -24.42612 -22.74249 -22.38799 -20.85613 -19.36622 -17.56009 -16.33637 -15.74880 -14.81997 -14.39393 -14.21353 -13.92674 -13.40570 -13.15883 -12.72543 -12.41864 -12.27425 -12.05640 -11.95004 -11.49698 -11.30816 -11.02459 -10.98653 -10.63816 -10.56519 -10.36285 -10.07014 -9.85685 -9.74433 -9.56398 -9.07332 -8.66255 -8.39919 -7.13951 -5.99372 -3.99892 2.59451 3.32457 3.39978 3.44775 4.45325 4.86968 5.05888 5.10783 5.35514 5.36782 5.60300 5.65203 5.71686 5.75384 5.91439 5.93125 6.04799 6.07838 6.13563 6.21075 6.24361 6.30509 6.35953 6.45024 6.52154 6.73430 6.78782 6.86465 6.94106 6.99124 7.28985 7.38561 7.42953 7.86468 8.17899 8.30182 8.62781 9.08762 9.64062 11.11527 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.007774 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.467288 B = 3600.793568 C = 4090.190403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 N -0.534 5.534 4 C 0.192 3.808 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.899 5.899 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.061 3.939 14 C -0.080 4.080 15 H 0.078 0.922 16 C -0.075 4.075 17 C -0.143 4.143 18 C -0.172 4.172 19 C -0.087 4.087 20 C -0.114 4.114 21 H 0.045 0.955 22 H 0.041 0.959 23 H 0.059 0.941 24 H 0.084 0.916 25 H 0.015 0.985 26 H 0.032 0.968 27 H -0.013 1.013 28 H 0.260 0.740 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.158 4.536 7.377 12.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 N -0.259 5.259 4 C 0.067 3.933 5 C -0.543 4.543 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.068 4.068 14 C -0.098 4.098 15 H 0.096 0.904 16 C -0.112 4.112 17 C -0.161 4.161 18 C -0.190 4.190 19 C -0.124 4.124 20 C -0.153 4.153 21 H 0.064 0.936 22 H 0.061 0.939 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.033 0.967 26 H 0.050 0.950 27 H 0.005 0.995 28 H 0.069 0.931 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.255 4.820 7.012 12.572 hybrid contribution 0.737 -0.576 -0.441 1.034 sum -8.518 4.244 6.571 11.565 Atomic orbital electron populations 1.21786 0.96766 1.00129 1.01294 1.21952 0.94099 0.90574 1.00674 1.62098 1.25126 1.16401 1.22238 1.19745 0.81641 0.96772 0.95148 1.21226 0.93208 1.44285 0.95567 0.91844 1.24990 0.95711 0.95710 0.98274 1.69975 0.98399 1.49002 1.36471 0.86485 0.78031 0.78054 0.85120 1.19679 1.21085 1.21185 1.22083 0.99199 0.94058 0.91455 1.21167 0.99472 0.94560 0.94648 0.90407 1.20361 0.97518 0.91025 1.02262 1.22249 0.99308 0.96922 0.97658 1.21944 1.00299 0.98827 0.97950 1.20392 0.99108 0.95772 0.97092 1.21640 1.01259 0.94778 0.97579 0.93615 0.93946 0.92185 0.89781 0.96686 0.95008 0.99503 0.93083 0.95922 0.92418 0.89517 0.91766 0.88631 0.88805 0.91135 0.91867 0.92291 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.96 37.16 0.37 -1.88 16 2 C 0.06 1.08 5.51 -3.82 -0.02 1.06 16 3 N -0.53 -11.37 3.99 -236.07 -0.94 -12.32 16 4 C 0.19 5.00 4.55 -4.98 -0.02 4.98 16 5 C -0.50 -14.15 8.23 -34.44 -0.28 -14.43 16 6 H 0.06 1.77 7.31 -52.49 -0.38 1.38 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.87 13.29 55.43 0.74 -26.13 16 9 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 13 C 0.06 1.10 4.21 -3.82 -0.02 1.09 16 14 C -0.08 -1.35 2.29 -90.40 -0.21 -1.55 16 15 H 0.08 1.55 6.68 -51.93 -0.35 1.20 16 16 C -0.07 -1.20 5.20 -28.18 -0.15 -1.34 16 17 C -0.14 -2.07 9.80 -35.90 -0.35 -2.42 16 18 C -0.17 -2.32 9.80 -35.90 -0.35 -2.68 16 19 C -0.09 -1.13 6.12 -28.17 -0.17 -1.30 16 20 C -0.11 -1.60 5.31 -26.51 -0.14 -1.74 16 21 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 22 H 0.04 0.62 6.89 -51.93 -0.36 0.26 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 24 H 0.08 1.82 6.58 -51.93 -0.34 1.48 16 25 H 0.01 0.29 8.00 -51.93 -0.42 -0.13 16 26 H 0.03 0.89 6.59 -51.93 -0.34 0.54 16 27 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.02 0.43 8.00 -51.93 -0.42 0.01 16 30 H 0.06 0.94 6.54 -51.93 -0.34 0.60 16 31 H 0.09 1.58 8.04 -51.93 -0.42 1.17 16 32 H 0.06 0.96 8.09 -51.93 -0.42 0.55 16 33 H 0.10 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.09 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 298.66 15.07 4.50 4.50 Total: -1.00 -29.03 298.66 -8.89 -37.91 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.72 Total: -1.94 kcal Atomic # 6 Polarization: -17.34 SS G_CDS: -1.44 Total: -18.78 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.21 Total: -38.45 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.03 -8.89 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402282681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.019 kcal (2) G-P(sol) polarization free energy of solvation -29.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds