Wall clock time and date at job start Sun Mar 29 2020 21:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.47118 * 2 1 4 4 C 1.46897 * 111.00016 * 199.67563 * 3 2 1 5 5 C 1.50705 * 109.46940 * 66.04430 * 4 3 2 6 6 H 1.07995 * 120.00113 * 0.02562 * 5 4 3 7 7 C 1.37880 * 120.00169 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99690 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00211 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47184 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47221 * 120.00044 * 9 7 5 12 12 H 1.48494 * 109.47130 * 240.00274 * 9 7 5 13 13 C 1.46901 * 110.99779 * 75.72552 * 3 2 1 14 14 C 1.53002 * 109.46696 * 199.72576 * 13 3 2 15 15 H 1.08999 * 109.64286 * 303.97230 * 14 13 3 16 16 C 1.53024 * 109.64514 * 64.39465 * 14 13 3 17 17 C 1.50066 * 110.14577 * 169.12011 * 16 14 13 18 18 C 1.29438 * 124.07726 * 342.86809 * 17 16 14 19 19 C 1.50072 * 124.07723 * 0.48951 * 18 17 16 20 20 C 1.53030 * 110.13756 * 342.83611 * 19 18 17 21 21 H 1.09002 * 109.47085 * 174.73888 * 1 2 3 22 22 H 1.08999 * 109.46930 * 294.73424 * 1 2 3 23 23 H 1.08997 * 109.47167 * 54.73896 * 1 2 3 24 24 H 1.09001 * 109.47143 * 239.99758 * 2 1 3 25 25 H 1.08997 * 109.47323 * 120.00240 * 2 1 3 26 26 H 1.08999 * 109.47172 * 186.04555 * 4 3 2 27 27 H 1.09001 * 109.47390 * 306.05255 * 4 3 2 28 28 H 0.97001 * 119.99686 * 180.02562 * 8 7 5 29 29 H 1.08996 * 109.47363 * 79.72601 * 13 3 2 30 30 H 1.08996 * 109.47071 * 319.71991 * 13 3 2 31 31 H 1.09002 * 109.35506 * 289.32715 * 16 14 13 32 32 H 1.09003 * 109.35363 * 49.04960 * 16 14 13 33 33 H 1.07999 * 117.96041 * 162.89295 * 17 16 14 34 34 H 1.08002 * 117.96465 * 180.47222 * 18 17 16 35 35 H 1.08999 * 109.35171 * 103.05407 * 19 18 17 36 36 H 1.08994 * 109.35938 * 222.77464 * 19 18 17 37 37 H 1.09004 * 109.65791 * 289.77557 * 20 19 18 38 38 H 1.09004 * 109.63883 * 169.13613 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4126 1.4509 -0.4617 5 6 3.4808 1.0464 -1.9119 6 1 2.5794 0.7687 -2.4380 7 6 4.6937 1.0320 -2.5674 8 7 5.7913 1.3707 -1.9269 9 14 4.7781 0.5314 -4.3650 10 1 3.4147 0.1996 -4.8510 11 1 5.3290 1.6539 -5.1661 12 1 5.6575 -0.6566 -4.5072 13 6 1.8763 1.9940 1.3291 14 6 1.9174 3.5179 1.1989 15 1 2.8376 3.8181 0.6977 16 6 0.7107 3.9977 0.3893 17 6 0.5908 5.4911 0.4762 18 6 1.1801 6.2150 1.3729 19 6 2.0742 5.6633 2.4445 20 6 1.8519 4.1564 2.5920 21 1 -0.3633 -1.0233 -0.0942 22 1 -0.3633 0.4300 0.9334 23 1 -0.3633 0.5933 -0.8391 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5138 0.8899 26 1 3.7844 2.4695 -0.3507 27 1 4.0252 0.7735 0.1334 28 1 6.6446 1.3609 -2.3881 29 1 2.6924 1.6621 1.9708 30 1 0.9245 1.6923 1.7663 31 1 0.8358 3.7053 -0.6533 32 1 -0.1956 3.5407 0.7865 33 1 -0.0259 5.9929 -0.2546 34 1 1.0187 7.2826 1.3481 35 1 3.1146 5.8510 2.1790 36 1 1.8487 6.1541 3.3912 37 1 0.8727 3.9718 3.0340 38 1 2.6297 3.7317 3.2267 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000402282681.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:18 Heat of formation + Delta-G solvation = -21.113233 kcal Electronic energy + Delta-G solvation = -15806.147697 eV Core-core repulsion = 13454.119004 eV Total energy + Delta-G solvation = -2352.028694 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.96413 -37.93973 -34.77754 -32.96678 -31.57351 -31.23492 -28.70966 -26.00422 -24.30592 -23.92020 -22.23715 -20.98610 -18.87013 -18.38087 -17.00541 -16.67699 -16.03190 -15.68018 -15.51832 -14.82422 -14.44349 -14.19423 -14.13606 -13.85172 -13.53086 -13.17376 -12.98321 -12.77898 -12.66265 -12.54456 -12.45005 -12.33236 -11.89555 -11.76975 -11.35458 -11.19465 -11.06138 -10.89208 -10.59926 -9.77163 -8.93127 -8.19873 -6.29185 1.39412 1.40199 1.50389 1.53782 2.40082 3.12261 3.31885 3.87352 3.90999 4.06694 4.28868 4.37494 4.47761 4.52692 4.59724 4.63905 4.73726 4.78486 4.83946 4.89180 4.97668 5.05868 5.08488 5.16136 5.16898 5.20592 5.30907 5.37538 5.49164 5.49385 5.59165 5.68137 5.87667 6.10214 6.17030 6.42886 6.71993 6.88620 7.40278 8.91468 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.025277 B = 0.007774 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.467288 B = 3600.793568 C = 4090.190403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.052 3.948 3 N -0.536 5.536 4 C 0.211 3.789 5 C -0.519 4.519 6 H 0.062 0.938 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.968 3.032 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.062 3.938 14 C -0.078 4.078 15 H 0.036 0.964 16 C -0.068 4.068 17 C -0.163 4.163 18 C -0.166 4.166 19 C -0.090 4.090 20 C -0.109 4.109 21 H 0.069 0.931 22 H 0.060 0.940 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.018 0.982 26 H 0.004 0.996 27 H -0.047 1.047 28 H 0.263 0.737 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.062 0.938 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.937 4.885 7.671 14.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.077 4.077 3 N -0.260 5.260 4 C 0.085 3.915 5 C -0.557 4.557 6 H 0.081 0.919 7 C -0.198 4.198 8 N -0.576 5.576 9 Si 0.792 3.208 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.204 1.204 13 C -0.066 4.066 14 C -0.097 4.097 15 H 0.055 0.945 16 C -0.105 4.105 17 C -0.181 4.181 18 C -0.184 4.184 19 C -0.127 4.127 20 C -0.147 4.147 21 H 0.088 0.912 22 H 0.079 0.921 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.022 0.978 27 H -0.029 1.029 28 H 0.072 0.928 29 H 0.029 0.971 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.127 0.873 34 H 0.134 0.866 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.056 5.166 7.318 14.229 hybrid contribution 1.304 -0.683 -0.467 1.544 sum -9.753 4.482 6.851 12.733 Atomic orbital electron populations 1.21675 0.93210 1.01814 1.01964 1.22027 0.96904 0.89195 0.99531 1.62077 1.21718 1.17846 1.24399 1.19343 0.83927 0.93992 0.94284 1.21511 0.93372 1.44296 0.96522 0.91943 1.25920 0.95235 0.95512 1.03156 1.70105 0.99051 1.49935 1.38530 0.85357 0.78454 0.77828 0.79132 1.18659 1.20518 1.20389 1.22193 1.00037 0.94815 0.89599 1.21103 0.98101 0.93848 0.96640 0.94523 1.20229 0.97416 0.92675 1.00165 1.22276 1.00929 0.95937 0.98937 1.22208 0.98991 0.99936 0.97226 1.20464 0.98631 0.95133 0.98435 1.21610 1.02372 0.95349 0.95354 0.91195 0.92145 0.92813 0.92447 0.96385 0.97802 1.02948 0.92816 0.97126 0.89578 0.92610 0.90375 0.87332 0.86602 0.91965 0.89026 0.90442 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.83 9.96 71.98 0.72 -3.11 16 2 C 0.05 2.02 5.51 86.30 0.48 2.49 16 3 N -0.54 -23.42 3.99 -900.80 -3.60 -27.01 16 4 C 0.21 11.57 4.55 85.56 0.39 11.96 16 5 C -0.52 -30.05 8.23 25.60 0.21 -29.84 16 6 H 0.06 3.56 7.31 -2.91 -0.02 3.53 16 7 C 0.00 -0.04 5.46 84.66 0.46 0.43 16 8 N -0.94 -57.58 13.29 21.45 0.28 -57.29 16 9 Si 0.97 45.18 29.54 68.60 2.03 47.20 16 10 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 13 C 0.06 2.24 4.21 86.30 0.36 2.61 16 14 C -0.08 -2.66 2.29 -10.65 -0.02 -2.68 16 15 H 0.04 1.54 6.68 -2.39 -0.02 1.53 16 16 C -0.07 -2.14 5.20 29.66 0.15 -1.99 16 17 C -0.16 -4.47 9.80 27.04 0.27 -4.21 16 18 C -0.17 -4.11 9.80 27.04 0.27 -3.85 16 19 C -0.09 -2.15 6.12 29.66 0.18 -1.97 16 20 C -0.11 -2.88 5.31 30.74 0.16 -2.72 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.06 1.58 6.89 -2.39 -0.02 1.56 16 23 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.06 2.53 6.58 -2.39 -0.02 2.52 16 25 H 0.02 0.68 8.00 -2.39 -0.02 0.67 16 26 H 0.00 0.23 6.59 -2.39 -0.02 0.22 16 27 H -0.05 -2.84 8.12 -2.39 -0.02 -2.86 16 28 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.01 0.41 8.00 -2.39 -0.02 0.39 16 30 H 0.09 2.65 6.54 -2.39 -0.02 2.63 16 31 H 0.06 2.09 8.04 -2.39 -0.02 2.07 16 32 H 0.08 2.20 8.09 -2.39 -0.02 2.19 16 33 H 0.11 2.67 8.06 -2.91 -0.02 2.64 16 34 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.08 1.79 8.12 -2.38 -0.02 1.77 16 38 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -64.42 298.66 3.32 -61.09 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.99 Total: 8.89 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 3.62 Total: -32.88 kcal Atomic # 7 Polarization: -80.99 SS G_CDS: -3.31 Total: -84.31 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Total: -64.42 3.32 -61.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000402282681.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.981 kcal (2) G-P(sol) polarization free energy of solvation -64.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds