Wall clock time and date at job start Sun Mar 29 2020 22:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99743 * 2 1 4 4 H 1.48500 * 109.47308 * 270.00084 * 3 2 1 5 5 H 1.48501 * 109.47316 * 30.00042 * 3 2 1 6 6 H 1.48501 * 109.47119 * 150.00174 * 3 2 1 7 7 C 1.37871 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99797 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00325 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47167 * 180.02562 * 9 7 2 11 11 C 1.50707 * 109.46731 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00165 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99510 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99677 * 180.02562 * 13 11 10 15 15 C 1.50705 * 109.46880 * 180.02562 * 14 13 11 16 16 C 1.35450 * 126.77526 * 90.00485 * 15 14 13 17 17 C 1.41375 * 103.98779 * 179.97438 * 16 15 14 18 18 N 1.30174 * 106.39554 * 359.97438 * 17 16 15 19 19 O 1.20925 * 111.60250 * 0.02562 * 18 17 16 20 20 H 0.96996 * 120.00500 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47077 * 59.99969 * 9 7 2 22 22 H 1.09000 * 109.47055 * 299.99845 * 9 7 2 23 23 H 1.09006 * 109.47073 * 60.00282 * 10 9 7 24 24 H 1.08992 * 109.47205 * 300.00140 * 10 9 7 25 25 H 0.97003 * 120.00147 * 0.02562 * 13 11 10 26 26 H 1.08998 * 109.47000 * 60.00598 * 14 13 11 27 27 H 1.09000 * 109.47401 * 300.00310 * 14 13 11 28 28 H 1.08002 * 128.01009 * 359.97438 * 16 15 14 29 29 H 1.07997 * 126.80869 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2792 -4.9672 0.0000 13 7 2.1659 -6.1343 -0.0003 14 6 1.4334 -7.4031 -0.0003 15 6 2.4128 -8.5485 -0.0001 16 6 2.9397 -9.1648 1.0849 17 6 3.7863 -10.1559 0.5374 18 7 3.6916 -10.0463 -0.7562 19 8 2.9337 -9.1591 -1.0736 20 1 -0.4851 0.8400 0.0004 21 1 0.6242 -2.5567 -0.8903 22 1 0.6249 -2.5571 0.8897 23 1 2.8721 -3.6043 0.8895 24 1 2.8721 -3.6043 -0.8904 25 1 3.1359 -6.1343 -0.0006 26 1 0.8066 -7.4607 -0.8901 27 1 0.8070 -7.4610 0.8899 28 1 2.7556 -8.9491 2.1270 29 1 4.3911 -10.8642 1.0841 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589713153.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:57 Heat of formation + Delta-G solvation = -10.283326 kcal Electronic energy + Delta-G solvation = -14352.898878 eV Core-core repulsion = 11664.247705 eV Total energy + Delta-G solvation = -2688.651174 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -45.96050 -40.67968 -36.46098 -35.51761 -34.80662 -33.28637 -32.52456 -28.63066 -26.86640 -24.47831 -23.59038 -22.37972 -21.29143 -19.00009 -18.64833 -18.39200 -17.33087 -16.86345 -16.64662 -16.37524 -15.75981 -15.08622 -14.69175 -14.32662 -14.16528 -13.93378 -13.41194 -13.20198 -12.79866 -12.46363 -12.38342 -11.88463 -11.61700 -11.48077 -11.28737 -11.03630 -10.54725 -10.42586 -10.18079 -8.15949 -6.29444 0.28503 1.29749 1.44115 1.46353 1.57198 1.69935 1.91775 2.38149 2.49898 3.17228 3.41701 3.50047 4.02096 4.05551 4.21082 4.45629 4.56073 4.60020 4.66462 4.75385 5.10345 5.11096 5.31612 5.53429 5.67409 5.88617 6.20362 6.51864 6.89262 7.19549 7.28908 7.40680 8.96494 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.070337 B = 0.004305 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 397.989190 B = 6503.076111 C = 6711.067597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.007 4.007 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.542 4.542 8 H 0.075 0.925 9 C 0.040 3.960 10 C -0.120 4.120 11 C 0.519 3.481 12 O -0.581 6.581 13 N -0.719 5.719 14 C 0.203 3.797 15 C -0.051 4.051 16 C -0.199 4.199 17 C -0.005 4.005 18 N -0.393 5.393 19 O 0.082 5.918 20 H 0.262 0.738 21 H -0.017 1.017 22 H -0.014 1.014 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.416 0.584 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.202 0.798 29 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.555 -18.121 3.234 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.205 4.205 3 Si 0.796 3.204 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.180 1.180 7 C -0.580 4.580 8 H 0.093 0.907 9 C 0.003 3.997 10 C -0.160 4.160 11 C 0.308 3.692 12 O -0.460 6.460 13 N -0.374 5.374 14 C 0.078 3.922 15 C -0.115 4.115 16 C -0.221 4.221 17 C -0.183 4.183 18 N -0.098 5.098 19 O 0.017 5.983 20 H 0.071 0.929 21 H 0.002 0.998 22 H 0.004 0.996 23 H 0.125 0.875 24 H 0.122 0.878 25 H 0.253 0.747 26 H 0.101 0.899 27 H 0.128 0.872 28 H 0.219 0.781 29 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 9.096 -18.685 2.189 20.897 hybrid contribution 0.060 1.055 0.650 1.241 sum 9.156 -17.630 2.839 20.068 Atomic orbital electron populations 1.70170 1.08220 1.27750 1.51549 1.26118 0.95731 1.03878 0.94766 0.85340 0.78687 0.77892 0.78432 1.19873 1.21230 1.17954 1.21728 0.94008 0.91691 1.50610 0.90653 1.18708 0.93757 0.92331 0.94927 1.21651 0.99369 0.89896 1.05037 1.21261 0.87767 0.86272 0.73943 1.90679 1.16417 1.88176 1.50768 1.45923 1.11086 1.04009 1.76361 1.19577 0.90245 0.77165 1.05169 1.24427 1.01011 0.99371 0.86715 1.23085 0.99572 0.97406 1.01990 1.25716 1.01474 1.01549 0.89562 1.73938 1.10087 1.06912 1.18829 1.84842 1.44027 1.35300 1.34125 0.92900 0.99820 0.99581 0.87458 0.87804 0.74664 0.89873 0.87188 0.78082 0.75919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.87 13.29 21.45 0.28 -58.59 15 2 C -0.01 -0.43 5.46 84.65 0.46 0.03 15 3 Si 0.97 43.91 29.54 68.60 2.03 45.93 15 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 15 5 H -0.29 -12.83 7.11 99.48 0.71 -12.13 15 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 15 7 C -0.54 -30.39 9.11 25.60 0.23 -30.15 15 8 H 0.08 3.84 7.74 -2.91 -0.02 3.81 15 9 C 0.04 2.19 4.26 29.85 0.13 2.32 15 10 C -0.12 -4.56 5.64 29.85 0.17 -4.39 15 11 C 0.52 18.52 7.83 87.66 0.69 19.21 15 12 O -0.58 -26.62 15.98 -3.01 -0.05 -26.67 15 13 N -0.72 -17.30 5.55 -466.78 -2.59 -19.89 15 14 C 0.20 4.20 6.24 85.63 0.53 4.73 15 15 C -0.05 -0.92 6.86 25.04 0.17 -0.75 15 16 C -0.20 -2.68 11.09 22.40 0.25 -2.43 15 17 C -0.01 -0.07 12.17 85.71 1.04 0.97 15 18 N -0.39 -8.43 12.07 -59.27 -0.72 -9.15 15 19 O 0.08 1.81 11.20 71.69 0.80 2.61 15 20 H 0.26 15.45 8.31 -92.71 -0.77 14.68 15 21 H -0.02 -1.03 8.10 -2.39 -0.02 -1.05 15 22 H -0.01 -0.87 8.10 -2.39 -0.02 -0.89 15 23 H 0.11 3.52 8.14 -2.38 -0.02 3.50 15 24 H 0.10 3.49 8.14 -2.39 -0.02 3.47 15 25 H 0.42 7.63 8.46 -92.71 -0.78 6.84 15 26 H 0.08 1.88 8.14 -2.39 -0.02 1.86 15 27 H 0.11 2.14 8.14 -2.39 -0.02 2.12 15 28 H 0.20 1.57 8.06 -2.91 -0.02 1.55 15 29 H 0.22 1.54 8.06 -2.91 -0.02 1.52 15 Total: -1.00 -75.97 266.99 3.81 -72.15 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: 0.38 Total: 4.08 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: 3.67 Total: -10.47 kcal Atomic # 7 Polarization: -84.61 SS G_CDS: -3.02 Total: -87.63 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: 0.75 Total: -24.06 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -75.97 3.81 -72.15 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589713153.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.870 kcal (2) G-P(sol) polarization free energy of solvation -75.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds