Wall clock time and date at job start Sun Mar 29 2020 22:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34179 * 126.37291 * 2 1 4 4 N 1.34623 * 107.77754 * 179.75676 * 3 2 1 5 5 C 1.30951 * 108.62187 * 0.24413 * 4 3 2 6 6 N 1.38653 * 125.69644 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00471 * 0.02667 * 6 5 4 8 8 O 1.21276 * 119.99521 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00286 * 179.97438 * 7 6 5 10 10 C 1.53009 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46766 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00378 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99503 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00268 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99671 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47215 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46964 * 120.00272 * 15 13 11 18 18 H 1.48501 * 109.46935 * 240.00181 * 15 13 11 19 19 O 1.34198 * 108.60502 * 0.02562 * 5 4 3 20 20 H 1.09004 * 109.47029 * 89.99841 * 1 2 3 21 21 H 1.08996 * 109.47711 * 209.99680 * 1 2 3 22 22 H 1.09007 * 109.47285 * 330.00275 * 1 2 3 23 23 H 1.08002 * 126.11507 * 0.02879 * 3 2 1 24 24 H 0.97006 * 119.99622 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.47306 * 299.99889 * 9 7 6 26 26 H 1.09001 * 109.47000 * 60.00501 * 9 7 6 27 27 H 1.08998 * 109.46951 * 300.00040 * 10 9 7 28 28 H 1.08993 * 109.47041 * 60.00092 * 10 9 7 29 29 H 0.97003 * 120.00206 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3027 1.0804 0.0000 4 7 3.5786 0.6511 0.0054 5 6 3.5793 -0.6584 0.0035 6 7 4.7057 -1.4669 0.0071 7 6 5.9337 -0.9118 0.0138 8 8 6.0535 0.2951 0.0162 9 6 7.1579 -1.7905 0.0184 10 6 8.4134 -0.9160 0.0263 11 6 9.6376 -1.7948 0.0315 12 1 9.5309 -2.8696 0.0289 13 6 10.8940 -1.2268 0.0385 14 7 11.0239 0.0819 0.0401 15 14 12.4115 -2.3161 0.0442 16 1 11.9972 -3.7421 0.0393 17 1 13.2277 -2.0341 -1.1640 18 1 13.2159 -2.0379 1.2611 19 8 2.3076 -1.0872 -0.0038 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5137 22 1 -0.3634 0.8901 0.5138 23 1 1.9777 2.1103 0.0004 24 1 4.6098 -2.4322 0.0048 25 1 7.1492 -2.4211 0.9073 26 1 7.1577 -2.4184 -0.8726 27 1 8.4223 -0.2851 -0.8625 28 1 8.4134 -0.2884 0.9174 29 1 11.9078 0.4816 0.0454 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589781448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:02 Heat of formation + Delta-G solvation = -10.313692 kcal Electronic energy + Delta-G solvation = -14533.565194 eV Core-core repulsion = 11844.912703 eV Total energy + Delta-G solvation = -2688.652490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -43.20784 -39.44464 -34.89391 -34.53259 -33.53655 -32.03185 -30.98841 -26.88126 -25.52247 -23.34905 -21.85778 -21.04505 -19.70647 -18.33811 -16.93507 -16.92999 -15.77896 -15.48271 -14.98299 -14.46254 -14.18649 -13.53152 -13.40574 -13.37844 -12.60221 -12.46976 -12.24713 -11.33848 -11.26546 -10.97526 -10.62282 -10.47133 -10.23380 -10.05286 -9.72707 -9.36520 -9.13767 -8.36804 -8.04566 -5.99727 -4.04929 1.46484 1.92197 2.69540 3.29604 3.31322 3.38371 3.41288 3.48803 4.43489 4.70867 4.82079 5.02295 5.11227 5.20768 5.35516 5.39676 5.59367 6.00340 6.06283 6.07552 6.15160 6.59373 6.71578 7.16044 7.69299 7.77313 8.00682 8.03975 8.29819 8.48922 9.02920 9.59065 11.11129 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.100293 B = 0.004591 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.115237 B = 6096.790974 C = 6350.150848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.082 4.082 3 C -0.018 4.018 4 N -0.469 5.469 5 C 0.420 3.580 6 N -0.629 5.629 7 C 0.507 3.493 8 O -0.459 6.459 9 C -0.119 4.119 10 C 0.035 3.965 11 C -0.529 4.529 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.888 5.888 15 Si 0.895 3.105 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 O -0.221 6.221 20 H 0.078 0.922 21 H 0.073 0.927 22 H 0.090 0.910 23 H 0.183 0.817 24 H 0.420 0.580 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.345 -4.069 -0.065 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.135 4.135 3 C -0.157 4.157 4 N -0.205 5.205 5 C 0.124 3.876 6 N -0.289 5.289 7 C 0.295 3.705 8 O -0.324 6.324 9 C -0.159 4.159 10 C -0.003 4.003 11 C -0.567 4.567 12 H 0.076 0.924 13 C -0.144 4.144 14 N -0.526 5.526 15 Si 0.722 3.278 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 O -0.109 6.109 20 H 0.097 0.903 21 H 0.092 0.908 22 H 0.108 0.892 23 H 0.200 0.800 24 H 0.258 0.742 25 H 0.107 0.893 26 H 0.107 0.893 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.484 -2.695 -0.061 18.680 hybrid contribution 0.122 -1.486 -0.010 1.491 sum -18.362 -4.181 -0.071 18.833 Atomic orbital electron populations 1.20152 0.83952 1.03959 1.03341 1.23065 0.94298 0.83915 1.12255 1.23138 0.87632 1.00272 1.04621 1.71235 1.21476 1.05735 1.22052 1.21957 0.79497 0.87015 0.99137 1.43365 1.01083 1.09722 1.74712 1.22182 0.82339 0.90744 0.75235 1.90830 1.84372 1.14807 1.42372 1.21955 0.91418 0.99118 1.03363 1.18982 0.87992 0.94269 0.99053 1.21198 0.90786 0.92962 1.51762 0.92359 1.25033 0.99207 0.94966 0.95197 1.70006 1.23267 1.09429 1.49888 0.86505 0.83016 0.80635 0.77613 1.19720 1.20997 1.20991 1.84313 1.16308 1.37086 1.73191 0.90298 0.90766 0.89163 0.79954 0.74244 0.89335 0.89336 0.95477 0.95479 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.43 36.00 0.38 -0.02 15 2 C -0.08 -1.00 7.38 -35.74 -0.26 -1.26 15 3 C -0.02 -0.25 11.79 -17.76 -0.21 -0.46 15 4 N -0.47 -8.84 9.47 -14.35 -0.14 -8.97 15 5 C 0.42 7.07 8.98 -86.60 -0.78 6.29 15 6 N -0.63 -9.64 5.39 -13.06 -0.07 -9.71 15 7 C 0.51 9.84 7.79 -10.99 -0.09 9.75 15 8 O -0.46 -11.16 14.65 5.56 0.08 -11.08 15 9 C -0.12 -2.27 5.64 -27.88 -0.16 -2.43 15 10 C 0.03 0.91 4.26 -27.88 -0.12 0.79 15 11 C -0.53 -14.64 9.11 -34.44 -0.31 -14.95 15 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 13 C 0.06 1.66 5.46 -17.82 -0.10 1.57 15 14 N -0.89 -27.12 13.29 55.43 0.74 -26.38 15 15 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 15 16 H -0.27 -6.28 7.11 56.52 0.40 -5.87 15 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 19 O -0.22 -3.15 10.80 3.99 0.04 -3.10 15 20 H 0.08 0.45 8.14 -51.93 -0.42 0.02 15 21 H 0.07 0.45 8.14 -51.93 -0.42 0.03 15 22 H 0.09 0.44 8.14 -51.93 -0.42 0.02 15 23 H 0.18 1.96 8.06 -52.49 -0.42 1.54 15 24 H 0.42 4.49 8.82 -40.82 -0.36 4.13 15 25 H 0.09 1.49 8.14 -51.93 -0.42 1.07 15 26 H 0.09 1.49 8.14 -51.93 -0.42 1.07 15 27 H 0.03 0.78 8.10 -51.93 -0.42 0.36 15 28 H 0.03 0.78 8.10 -51.93 -0.42 0.36 15 29 H 0.26 7.49 8.31 -40.82 -0.34 7.15 15 LS Contribution 265.13 15.07 4.00 4.00 Total: -1.00 -36.04 265.13 -5.30 -41.34 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -3.28 Total: -1.72 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.65 Total: -0.72 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.53 Total: -45.06 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.12 Total: -14.19 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -36.04 -5.30 -41.34 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589781448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.025 kcal (2) G-P(sol) polarization free energy of solvation -36.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds