Wall clock time and date at job start Sun Mar 29 2020 22:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34179 * 126.37291 * 2 1 4 4 N 1.34623 * 107.77754 * 179.75676 * 3 2 1 5 5 C 1.30951 * 108.62187 * 0.24413 * 4 3 2 6 6 N 1.38653 * 125.69644 * 179.97438 * 5 4 3 7 7 C 1.34773 * 120.00471 * 0.02667 * 6 5 4 8 8 O 1.21276 * 119.99521 * 359.97438 * 7 6 5 9 9 C 1.50694 * 120.00286 * 179.97438 * 7 6 5 10 10 C 1.53009 * 109.46990 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46766 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00378 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99503 * 179.97438 * 11 10 9 14 14 N 1.31510 * 120.00268 * 359.97438 * 13 11 10 15 15 Si 1.86802 * 119.99671 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47215 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46964 * 120.00272 * 15 13 11 18 18 H 1.48501 * 109.46935 * 240.00181 * 15 13 11 19 19 O 1.34198 * 108.60502 * 0.02562 * 5 4 3 20 20 H 1.09004 * 109.47029 * 89.99841 * 1 2 3 21 21 H 1.08996 * 109.47711 * 209.99680 * 1 2 3 22 22 H 1.09007 * 109.47285 * 330.00275 * 1 2 3 23 23 H 1.08002 * 126.11507 * 0.02879 * 3 2 1 24 24 H 0.97006 * 119.99622 * 180.02562 * 6 5 4 25 25 H 1.08998 * 109.47306 * 299.99889 * 9 7 6 26 26 H 1.09001 * 109.47000 * 60.00501 * 9 7 6 27 27 H 1.08998 * 109.46951 * 300.00040 * 10 9 7 28 28 H 1.08993 * 109.47041 * 60.00092 * 10 9 7 29 29 H 0.97003 * 120.00206 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3027 1.0804 0.0000 4 7 3.5786 0.6511 0.0054 5 6 3.5793 -0.6584 0.0035 6 7 4.7057 -1.4669 0.0071 7 6 5.9337 -0.9118 0.0138 8 8 6.0535 0.2951 0.0162 9 6 7.1579 -1.7905 0.0184 10 6 8.4134 -0.9160 0.0263 11 6 9.6376 -1.7948 0.0315 12 1 9.5309 -2.8696 0.0289 13 6 10.8940 -1.2268 0.0385 14 7 11.0239 0.0819 0.0401 15 14 12.4115 -2.3161 0.0442 16 1 11.9972 -3.7421 0.0393 17 1 13.2277 -2.0341 -1.1640 18 1 13.2159 -2.0379 1.2611 19 8 2.3076 -1.0872 -0.0038 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3634 -0.8899 0.5137 22 1 -0.3634 0.8901 0.5138 23 1 1.9777 2.1103 0.0004 24 1 4.6098 -2.4322 0.0048 25 1 7.1492 -2.4211 0.9073 26 1 7.1577 -2.4184 -0.8726 27 1 8.4223 -0.2851 -0.8625 28 1 8.4134 -0.2884 0.9174 29 1 11.9078 0.4816 0.0454 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589781448.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:01 Heat of formation + Delta-G solvation = -38.609566 kcal Electronic energy + Delta-G solvation = -14534.792195 eV Core-core repulsion = 11844.912703 eV Total energy + Delta-G solvation = -2689.879492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -44.34871 -40.97137 -36.31171 -35.73903 -35.54624 -33.25471 -32.60817 -28.40323 -26.94050 -24.85294 -23.33068 -22.35754 -21.19855 -19.59924 -18.81033 -18.10670 -17.54444 -16.62226 -16.52245 -16.43447 -15.32560 -15.03048 -14.48144 -14.30503 -14.19232 -13.82737 -13.28519 -13.16529 -12.86398 -12.62893 -12.44456 -11.94272 -11.75596 -11.68019 -11.48797 -11.25311 -10.93092 -10.56666 -9.17554 -8.17084 -6.30991 0.32044 0.70794 1.40202 1.44889 1.45875 1.59158 1.94836 2.39965 2.47522 3.16828 3.44105 3.92403 3.97257 4.18842 4.39222 4.47557 4.52342 4.74650 4.89720 5.02463 5.12402 5.25089 5.37108 5.52202 5.61164 5.85463 5.93774 6.16082 6.79568 6.88171 7.11363 7.39459 8.95850 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.100293 B = 0.004591 C = 0.004408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 279.115237 B = 6096.790974 C = 6350.150848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C -0.056 4.056 3 C -0.052 4.052 4 N -0.518 5.518 5 C 0.395 3.605 6 N -0.608 5.608 7 C 0.515 3.485 8 O -0.520 6.520 9 C -0.104 4.104 10 C 0.038 3.962 11 C -0.539 4.539 12 H 0.082 0.918 13 C -0.009 4.009 14 N -0.939 5.939 15 Si 0.975 3.025 16 H -0.250 1.250 17 H -0.283 1.283 18 H -0.283 1.283 19 O -0.215 6.215 20 H 0.099 0.901 21 H 0.088 0.912 22 H 0.115 0.885 23 H 0.207 0.793 24 H 0.443 0.557 25 H 0.121 0.879 26 H 0.121 0.879 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.008 -6.584 -0.074 22.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.109 4.109 3 C -0.189 4.189 4 N -0.256 5.256 5 C 0.098 3.902 6 N -0.268 5.268 7 C 0.304 3.696 8 O -0.390 6.390 9 C -0.143 4.143 10 C 0.000 4.000 11 C -0.577 4.577 12 H 0.100 0.900 13 C -0.207 4.207 14 N -0.579 5.579 15 Si 0.799 3.201 16 H -0.173 1.173 17 H -0.209 1.209 18 H -0.209 1.209 19 O -0.102 6.102 20 H 0.117 0.883 21 H 0.107 0.893 22 H 0.134 0.866 23 H 0.224 0.776 24 H 0.285 0.715 25 H 0.139 0.861 26 H 0.139 0.861 27 H 0.003 0.997 28 H 0.003 0.997 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.214 -5.286 -0.070 20.894 hybrid contribution 0.445 -0.647 -0.011 0.785 sum -19.769 -5.933 -0.080 20.640 Atomic orbital electron populations 1.20495 0.79672 1.05921 1.05193 1.24154 0.96161 0.82652 1.07915 1.23608 0.86499 1.02216 1.06601 1.71129 1.24476 1.07359 1.22632 1.21835 0.80448 0.86842 1.01057 1.42735 0.99869 1.10684 1.73562 1.22046 0.83555 0.89759 0.74225 1.90815 1.85478 1.17235 1.45511 1.21707 0.88145 0.98009 1.06474 1.18764 0.91755 0.94344 0.95110 1.21726 0.91225 0.94204 1.50549 0.89961 1.26158 1.03396 0.96372 0.94748 1.70190 1.24151 1.11970 1.51556 0.85250 0.78070 0.79401 0.77358 1.17307 1.20884 1.20866 1.84343 1.15404 1.37671 1.72810 0.88269 0.89329 0.86633 0.77619 0.71541 0.86063 0.86062 0.99675 0.99672 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.43 71.23 0.74 0.19 15 2 C -0.06 -1.23 7.38 24.76 0.18 -1.05 15 3 C -0.05 -1.43 11.79 83.34 0.98 -0.44 15 4 N -0.52 -19.92 9.47 -313.65 -2.97 -22.88 15 5 C 0.39 13.13 8.98 178.94 1.61 14.74 15 6 N -0.61 -18.13 5.39 -423.81 -2.28 -20.41 15 7 C 0.51 20.23 7.79 87.66 0.68 20.91 15 8 O -0.52 -26.68 14.65 -3.02 -0.04 -26.72 15 9 C -0.10 -3.89 5.64 29.85 0.17 -3.72 15 10 C 0.04 2.06 4.26 29.85 0.13 2.19 15 11 C -0.54 -29.79 9.11 25.60 0.23 -29.56 15 12 H 0.08 4.06 7.74 -2.91 -0.02 4.04 15 13 C -0.01 -0.54 5.46 84.66 0.46 -0.08 15 14 N -0.94 -59.38 13.29 21.45 0.28 -59.09 15 15 Si 0.98 43.76 29.54 68.60 2.03 45.79 15 16 H -0.25 -10.20 7.11 99.48 0.71 -9.50 15 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 15 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 19 O -0.21 -5.75 10.80 -8.65 -0.09 -5.84 15 20 H 0.10 0.69 8.14 -2.38 -0.02 0.67 15 21 H 0.09 0.69 8.14 -2.39 -0.02 0.68 15 22 H 0.12 0.63 8.14 -2.38 -0.02 0.61 15 23 H 0.21 4.25 8.06 -2.91 -0.02 4.23 15 24 H 0.44 8.51 8.82 -92.70 -0.82 7.69 15 25 H 0.12 3.78 8.14 -2.39 -0.02 3.76 15 26 H 0.12 3.78 8.14 -2.39 -0.02 3.76 15 27 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 15 28 H -0.02 -0.94 8.10 -2.39 -0.02 -0.96 15 29 H 0.26 15.54 8.31 -92.71 -0.77 14.76 15 Total: -1.00 -83.34 265.13 2.46 -80.88 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: 0.35 Total: 5.12 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 5.19 Total: 3.17 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -4.97 Total: -102.39 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.14 Total: -32.56 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -83.34 2.46 -80.88 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589781448.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.267 kcal (2) G-P(sol) polarization free energy of solvation -83.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds