Wall clock time and date at job start Sun Mar 29 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09008 * 109.47507 * 2 1 4 4 C 1.52998 * 109.47407 * 120.00060 * 2 1 3 5 5 C 1.50704 * 109.47339 * 184.99720 * 4 2 1 6 6 H 1.08000 * 119.99572 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99628 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00596 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99617 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47179 * 90.00040 * 9 7 5 11 11 H 1.48493 * 109.47471 * 210.00246 * 9 7 5 12 12 H 1.48501 * 109.47108 * 330.00113 * 9 7 5 13 13 N 1.46904 * 109.47316 * 240.00617 * 2 1 3 14 14 C 1.48539 * 110.99666 * 311.00319 * 13 2 1 15 15 C 1.54936 * 103.22530 * 159.71757 * 14 13 2 16 16 C 1.54585 * 102.92322 * 322.58876 * 15 14 13 17 17 H 1.08998 * 110.39665 * 262.99179 * 16 15 14 18 18 C 1.53007 * 110.31092 * 140.87165 * 16 15 14 19 19 C 1.53002 * 117.50110 * 132.90183 * 18 16 15 20 20 C 1.52997 * 60.00143 * 252.51408 * 19 18 16 21 21 C 1.47898 * 111.00080 * 68.39772 * 13 2 1 22 22 H 1.08998 * 109.47227 * 187.74846 * 1 2 3 23 23 H 1.08999 * 109.47335 * 307.75184 * 1 2 3 24 24 H 1.09006 * 109.47475 * 67.74829 * 1 2 3 25 25 H 1.09003 * 109.46882 * 65.00068 * 4 2 1 26 26 H 1.08998 * 109.47191 * 305.00314 * 4 2 1 27 27 H 0.96998 * 120.00486 * 180.02562 * 8 7 5 28 28 H 1.08994 * 110.67151 * 278.16216 * 14 13 2 29 29 H 1.09011 * 110.66057 * 41.28871 * 14 13 2 30 30 H 1.09001 * 110.72270 * 204.22886 * 15 14 13 31 31 H 1.09000 * 110.87434 * 81.02290 * 15 14 13 32 32 H 1.08998 * 115.55088 * 278.61455 * 18 16 15 33 33 H 1.09000 * 117.49530 * 0.02562 * 19 18 16 34 34 H 1.08997 * 117.49432 * 145.02211 * 19 18 16 35 35 H 1.09000 * 117.50072 * 252.51457 * 20 19 18 36 36 H 1.09001 * 117.49933 * 107.48665 * 20 19 18 37 37 H 1.08998 * 109.92022 * 333.51671 * 21 13 2 38 38 H 1.09000 * 109.91695 * 94.80620 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6149 1.3126 6 1 4.0789 -0.0855 0.5395 7 6 4.2304 -1.1936 2.3577 8 7 3.5766 -1.8387 3.2988 9 14 6.0920 -1.0612 2.4366 10 1 6.4698 0.1609 3.1910 11 1 6.6447 -2.2568 3.1224 12 1 6.6416 -0.9825 1.0593 13 7 2.0196 -0.6924 -1.1995 14 6 1.3393 -2.0013 -1.3736 15 6 1.5588 -2.3180 -2.8743 16 6 1.4307 -0.9301 -3.5429 17 1 0.4231 -0.7881 -3.9335 18 6 2.4598 -0.7846 -4.6659 19 6 1.9685 -0.2383 -6.0079 20 6 2.3280 -1.7191 -5.8702 21 6 1.7171 0.0849 -2.4209 22 1 -0.3633 -1.0183 0.1386 23 1 -0.3634 0.6292 0.8125 24 1 -0.3634 0.3892 -0.9512 25 1 1.7516 -1.7715 1.2055 26 1 1.6054 -0.2618 2.1369 27 1 4.0609 -2.2455 4.0342 28 1 1.8041 -2.7628 -0.7476 29 1 0.2758 -1.9146 -1.1503 30 1 0.7885 -2.9959 -3.2421 31 1 2.5511 -2.7368 -3.0417 32 1 3.4661 -0.5111 -4.3488 33 1 0.9122 0.0178 -6.0907 34 1 2.6516 0.3949 -6.5739 35 1 3.2477 -2.0600 -6.3456 36 1 1.5082 -2.4374 -5.8625 37 1 0.8410 0.7117 -2.2546 38 1 2.5737 0.7033 -2.6892 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591021910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:33 Heat of formation + Delta-G solvation = 1.805273 kcal Electronic energy + Delta-G solvation = -15788.109824 eV Core-core repulsion = 13437.074951 eV Total energy + Delta-G solvation = -2351.034873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58628 -38.05193 -35.43710 -33.88124 -30.22007 -29.63098 -29.03482 -25.30639 -23.54950 -23.12424 -22.72249 -20.68192 -20.19956 -18.36714 -17.16497 -16.57363 -16.40406 -16.15671 -15.03195 -14.98167 -14.64786 -14.14832 -13.71747 -13.58735 -13.31111 -12.87151 -12.84388 -12.66511 -12.49402 -12.37305 -12.30425 -12.17379 -11.94343 -11.75199 -11.37450 -11.12704 -11.06958 -10.92773 -10.64281 -10.48801 -8.93777 -8.10726 -6.15815 1.40358 1.41687 1.53385 2.46830 2.95506 3.19788 3.34591 3.68998 3.80234 3.92754 4.16721 4.20593 4.31743 4.39662 4.45564 4.51638 4.58092 4.62636 4.74031 4.78525 4.85146 4.96877 5.03724 5.08397 5.17220 5.18665 5.22590 5.32617 5.33619 5.37115 5.46204 5.51640 5.70155 5.88498 6.30469 6.35149 6.54125 6.97710 7.49959 9.01439 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.007108 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.671592 B = 3938.418913 C = 4433.217425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.084 3.916 3 H 0.060 0.940 4 C 0.040 3.960 5 C -0.501 4.501 6 H 0.055 0.945 7 C -0.006 4.006 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.269 1.269 13 N -0.515 5.515 14 C 0.031 3.969 15 C -0.105 4.105 16 C -0.055 4.055 17 H 0.087 0.913 18 C -0.154 4.154 19 C -0.172 4.172 20 C -0.174 4.174 21 C 0.038 3.962 22 H 0.053 0.947 23 H 0.058 0.942 24 H 0.069 0.931 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.259 0.741 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.049 0.951 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.861 1.773 -17.111 18.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.025 4.025 3 H 0.078 0.922 4 C 0.002 3.998 5 C -0.540 4.540 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.582 5.582 9 Si 0.783 3.217 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.239 5.239 14 C -0.097 4.097 15 C -0.143 4.143 16 C -0.074 4.074 17 H 0.105 0.895 18 C -0.173 4.173 19 C -0.209 4.209 20 C -0.211 4.211 21 C -0.090 4.090 22 H 0.072 0.928 23 H 0.077 0.923 24 H 0.087 0.913 25 H 0.011 0.989 26 H 0.009 0.991 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.260 1.632 -16.887 17.762 hybrid contribution 0.222 0.033 0.732 0.766 sum -5.037 1.666 -16.155 17.004 Atomic orbital electron populations 1.22382 0.97004 1.01750 1.02049 1.21735 0.92311 0.97161 0.91308 0.92183 1.18974 0.95192 0.94137 0.91454 1.21484 0.93355 1.32458 1.06666 0.92707 1.25863 1.03019 0.95565 0.95693 1.70089 1.37142 1.37955 1.13062 0.85561 0.80458 0.77506 0.78178 1.19966 1.21053 1.19356 1.64820 1.54558 1.03138 1.01390 1.23229 0.97112 0.92151 0.97175 1.22454 1.02191 0.96860 0.92830 1.21502 0.98257 0.94167 0.93435 0.89510 1.22252 0.99438 1.06309 0.89279 1.23078 1.02366 0.96599 0.98853 1.22969 1.03610 0.93403 1.01159 1.22978 0.99805 0.96355 0.89872 0.92800 0.92290 0.91261 0.98904 0.99076 0.93225 0.93282 0.92778 0.89505 0.91821 0.89138 0.88068 0.88355 0.88568 0.88232 0.93270 0.91545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.91 8.17 71.98 0.59 -5.32 16 2 C 0.08 3.54 2.22 44.91 0.10 3.64 16 3 H 0.06 2.60 8.10 -2.38 -0.02 2.58 16 4 C 0.04 2.14 4.46 29.85 0.13 2.27 16 5 C -0.50 -29.48 8.84 25.60 0.23 -29.26 16 6 H 0.05 3.21 7.74 -2.91 -0.02 3.19 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -58.94 13.29 21.44 0.28 -58.65 16 9 Si 0.96 46.55 29.54 68.60 2.03 48.58 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 N -0.52 -20.17 4.95 -857.84 -4.25 -24.42 16 14 C 0.03 1.10 5.57 86.65 0.48 1.58 16 15 C -0.11 -2.88 6.41 31.80 0.20 -2.67 16 16 C -0.05 -1.35 3.15 -9.92 -0.03 -1.38 16 17 H 0.09 1.82 7.96 -2.39 -0.02 1.80 16 18 C -0.15 -3.46 4.84 -10.79 -0.05 -3.51 16 19 C -0.17 -3.00 10.19 30.59 0.31 -2.69 16 20 C -0.17 -3.17 10.03 30.59 0.31 -2.86 16 21 C 0.04 1.15 6.10 86.45 0.53 1.67 16 22 H 0.05 1.85 6.41 -2.39 -0.02 1.84 16 23 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.07 1.98 6.28 -2.38 -0.01 1.97 16 25 H -0.01 -0.43 7.10 -2.39 -0.02 -0.45 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 28 H 0.05 2.05 7.65 -2.39 -0.02 2.03 16 29 H 0.05 1.78 5.46 -2.38 -0.01 1.77 16 30 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 1.88 7.86 -2.39 -0.02 1.86 16 32 H 0.09 2.33 7.96 -2.39 -0.02 2.32 16 33 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.39 6.02 -2.39 -0.01 1.38 16 38 H 0.07 2.09 7.56 -2.39 -0.02 2.08 16 Total: -1.00 -65.66 295.88 2.32 -63.33 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 1.00 Total: 9.54 kcal Atomic # 6 Polarization: -41.64 SS G_CDS: 3.26 Total: -38.38 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -3.97 Total: -83.07 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -65.66 2.32 -63.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591021910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.140 kcal (2) G-P(sol) polarization free energy of solvation -65.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds