Wall clock time and date at job start Sun Mar 29 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 C 1.53000 * 109.47087 * 239.99525 * 2 1 3 5 5 C 1.50703 * 109.47036 * 175.33608 * 4 2 1 6 6 H 1.07997 * 120.00109 * 355.00623 * 5 4 2 7 7 C 1.37876 * 119.99851 * 175.00479 * 5 4 2 8 8 N 1.31512 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99937 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46838 * 89.99960 * 9 7 5 11 11 H 1.48492 * 109.47095 * 210.00221 * 9 7 5 12 12 H 1.48500 * 109.46772 * 330.00324 * 9 7 5 13 13 N 1.46905 * 109.47215 * 119.99481 * 2 1 3 14 14 C 1.47904 * 110.99539 * 63.74077 * 13 2 1 15 15 C 1.53996 * 107.05616 * 214.15739 * 14 13 2 16 16 C 1.54604 * 105.13810 * 1.22385 * 15 14 13 17 17 H 1.09000 * 110.72109 * 263.42284 * 16 15 14 18 18 C 1.52998 * 110.72363 * 140.32086 * 16 15 14 19 19 C 1.52990 * 117.50102 * 130.07419 * 18 16 15 20 20 C 1.52991 * 60.00252 * 252.50761 * 19 18 16 21 21 C 1.48534 * 110.99908 * 306.34736 * 13 2 1 22 22 H 1.08995 * 109.47289 * 66.80459 * 1 2 3 23 23 H 1.09006 * 109.46927 * 186.80795 * 1 2 3 24 24 H 1.09003 * 109.47092 * 306.80718 * 1 2 3 25 25 H 1.08996 * 109.47429 * 295.33857 * 4 2 1 26 26 H 1.09002 * 109.46883 * 55.33809 * 4 2 1 27 27 H 0.97000 * 120.00356 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.91783 * 333.50267 * 14 13 2 29 29 H 1.08997 * 109.91714 * 94.60692 * 14 13 2 30 30 H 1.08994 * 110.31237 * 120.14208 * 15 14 13 31 31 H 1.09005 * 110.30979 * 242.21192 * 15 14 13 32 32 H 1.09007 * 115.54648 * 275.78053 * 18 16 15 33 33 H 1.08996 * 117.50186 * 359.97438 * 19 18 16 34 34 H 1.09007 * 117.50264 * 145.02102 * 19 18 16 35 35 H 1.09003 * 117.50411 * 252.51049 * 20 19 18 36 36 H 1.09006 * 117.50050 * 107.48787 * 20 19 18 37 37 H 1.09005 * 110.66153 * 278.14956 * 21 13 2 38 38 H 1.08993 * 110.67147 * 41.27762 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5426 -0.6221 -1.3083 6 1 4.0738 -0.0297 -0.5780 7 6 4.2391 -1.2876 -2.2947 8 7 3.5923 -2.0085 -3.1843 9 14 6.1017 -1.1651 -2.3676 10 1 6.7014 -2.2540 -1.5553 11 1 6.5514 -1.2936 -3.7769 12 1 6.5327 0.1497 -1.8282 13 7 2.0197 -0.6924 1.1995 14 6 1.6203 -2.1165 1.1895 15 6 1.3607 -2.5231 2.6520 16 6 1.6063 -1.2392 3.4776 17 1 2.6175 -1.2299 3.8845 18 6 0.5727 -1.1103 4.5983 19 6 1.0925 -0.8327 6.0102 20 6 0.5374 -2.2140 5.6573 21 6 1.4223 -0.1129 2.4298 22 1 -0.3633 0.4047 -0.9445 23 1 -0.3633 -1.0205 0.1218 24 1 -0.3633 0.6157 0.8228 25 1 1.7465 -1.7703 -1.2084 26 1 1.6100 -0.2580 -2.1372 27 1 4.0822 -2.4764 -3.8785 28 1 0.7110 -2.2430 0.6020 29 1 2.4217 -2.7239 0.7688 30 1 0.3314 -2.8602 2.7739 31 1 2.0537 -3.3080 2.9552 32 1 -0.3762 -0.6563 4.3127 33 1 2.1708 -0.7423 6.1409 34 1 0.4856 -0.1958 6.6539 35 1 -0.4347 -2.4860 6.0686 36 1 1.2506 -3.0321 5.5556 37 1 1.9603 0.7855 2.7322 38 1 0.3647 0.1032 2.2789 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591021911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:35 Heat of formation + Delta-G solvation = 19.684187 kcal Electronic energy + Delta-G solvation = -15809.922609 eV Core-core repulsion = 13459.663024 eV Total energy + Delta-G solvation = -2350.259585 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.28435 -36.97978 -33.66645 -32.01961 -28.72807 -28.27342 -27.17716 -23.41271 -22.53940 -21.89975 -21.50260 -19.71361 -18.26322 -16.16847 -15.89533 -15.63681 -14.71492 -14.37927 -14.03923 -13.45732 -13.13889 -12.74712 -12.09231 -11.80910 -11.70391 -11.56367 -11.48799 -11.26476 -11.07755 -10.91749 -10.73585 -10.64780 -10.42682 -10.14596 -10.06806 -9.83530 -9.71751 -9.06592 -8.98781 -8.23619 -7.45291 -5.86593 -3.84500 3.41341 3.46919 3.51606 3.77347 4.52374 4.58664 4.82533 4.90837 4.93065 5.17519 5.37732 5.45075 5.52229 5.57359 5.59290 5.67490 5.86048 5.91890 5.95166 6.00094 6.06889 6.07944 6.15961 6.17215 6.26886 6.43893 6.54047 6.60773 6.76101 6.86534 7.01340 7.55896 7.72160 7.86972 8.04969 8.15602 8.60238 9.21565 9.77216 11.25348 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.006653 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.521789 B = 4207.461648 C = 4525.667697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.076 3.924 3 H 0.070 0.930 4 C 0.027 3.973 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.890 3.110 10 H -0.283 1.283 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.489 5.489 14 C 0.040 3.960 15 C -0.122 4.122 16 C -0.061 4.061 17 H 0.079 0.921 18 C -0.139 4.139 19 C -0.182 4.182 20 C -0.181 4.181 21 C 0.032 3.968 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.044 0.956 25 H 0.023 0.977 26 H 0.014 0.986 27 H 0.257 0.743 28 H 0.044 0.956 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.916 0.860 14.453 16.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.032 4.032 3 H 0.088 0.912 4 C -0.010 4.010 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.719 3.281 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.212 5.212 14 C -0.088 4.088 15 C -0.161 4.161 16 C -0.080 4.080 17 H 0.097 0.903 18 C -0.157 4.157 19 C -0.219 4.219 20 C -0.218 4.218 21 C -0.096 4.096 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.300 0.814 14.272 15.622 hybrid contribution 0.094 -0.099 -0.166 0.215 sum -6.207 0.715 14.106 15.428 Atomic orbital electron populations 1.22547 0.99926 1.01044 1.00961 1.22018 0.90020 0.98784 0.92422 0.91207 1.19237 0.96389 0.95618 0.89794 1.21177 0.91715 1.28605 1.11400 0.92192 1.25000 0.98046 0.95816 0.95985 1.69965 1.35188 1.32671 1.16694 0.86623 0.86420 0.78357 0.76737 1.20916 1.21629 1.20006 1.64968 1.53805 1.01495 1.00926 1.22793 1.00189 0.91238 0.94535 1.22452 1.00881 0.97176 0.95549 1.21648 0.97520 0.95473 0.93340 0.90272 1.22326 1.00439 1.03041 0.89918 1.22994 1.01170 0.99174 0.98566 1.22902 1.02477 0.92549 1.03872 1.23341 0.97964 0.97241 0.91030 0.92503 0.92901 0.93756 0.95855 0.96739 0.93345 0.93759 0.89952 0.92084 0.91753 0.88140 0.88827 0.89230 0.89235 0.88826 0.91014 0.93706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 8.35 37.16 0.31 -2.97 16 2 C 0.08 1.60 2.48 -67.71 -0.17 1.43 16 3 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 4 C 0.03 0.69 4.24 -27.88 -0.12 0.57 16 5 C -0.49 -13.97 8.83 -34.44 -0.30 -14.28 16 6 H 0.06 1.72 7.75 -52.49 -0.41 1.31 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.50 13.29 55.43 0.74 -26.77 16 9 Si 0.89 22.34 29.54 -169.99 -5.02 17.32 16 10 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.49 -9.64 5.06 -222.50 -1.13 -10.76 16 14 C 0.04 0.75 5.05 -2.75 -0.01 0.74 16 15 C -0.12 -1.81 6.26 -25.37 -0.16 -1.96 16 16 C -0.06 -0.85 3.23 -88.76 -0.29 -1.13 16 17 H 0.08 1.14 7.96 -51.93 -0.41 0.73 16 18 C -0.14 -1.59 5.10 -90.63 -0.46 -2.06 16 19 C -0.18 -1.83 10.19 -26.74 -0.27 -2.11 16 20 C -0.18 -1.83 9.98 -26.74 -0.27 -2.10 16 21 C 0.03 0.51 5.79 -1.90 -0.01 0.50 16 22 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.05 0.92 6.00 -51.93 -0.31 0.61 16 24 H 0.04 0.69 6.35 -51.93 -0.33 0.36 16 25 H 0.02 0.64 6.66 -51.93 -0.35 0.29 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.04 0.84 5.30 -51.93 -0.28 0.56 16 29 H 0.08 1.76 8.11 -51.93 -0.42 1.34 16 30 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.10 1.14 7.95 -51.92 -0.41 0.72 16 33 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.04 0.68 5.34 -51.93 -0.28 0.40 16 LS Contribution 294.94 15.07 4.44 4.44 Total: -1.00 -29.80 294.94 -9.35 -39.15 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.54 Total: -1.41 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -1.85 Total: -21.98 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.39 Total: -37.53 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.80 -9.35 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591021911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.839 kcal (2) G-P(sol) polarization free energy of solvation -29.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds