Wall clock time and date at job start Sun Mar 29 2020 21:41:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47168 * 2 1 4 4 C 1.53000 * 109.47087 * 239.99525 * 2 1 3 5 5 C 1.50703 * 109.47036 * 175.33608 * 4 2 1 6 6 H 1.07997 * 120.00109 * 355.00623 * 5 4 2 7 7 C 1.37876 * 119.99851 * 175.00479 * 5 4 2 8 8 N 1.31512 * 120.00230 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99937 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46838 * 89.99960 * 9 7 5 11 11 H 1.48492 * 109.47095 * 210.00221 * 9 7 5 12 12 H 1.48500 * 109.46772 * 330.00324 * 9 7 5 13 13 N 1.46905 * 109.47215 * 119.99481 * 2 1 3 14 14 C 1.47904 * 110.99539 * 63.74077 * 13 2 1 15 15 C 1.53996 * 107.05616 * 214.15739 * 14 13 2 16 16 C 1.54604 * 105.13810 * 1.22385 * 15 14 13 17 17 H 1.09000 * 110.72109 * 263.42284 * 16 15 14 18 18 C 1.52998 * 110.72363 * 140.32086 * 16 15 14 19 19 C 1.52990 * 117.50102 * 130.07419 * 18 16 15 20 20 C 1.52991 * 60.00252 * 252.50761 * 19 18 16 21 21 C 1.48534 * 110.99908 * 306.34736 * 13 2 1 22 22 H 1.08995 * 109.47289 * 66.80459 * 1 2 3 23 23 H 1.09006 * 109.46927 * 186.80795 * 1 2 3 24 24 H 1.09003 * 109.47092 * 306.80718 * 1 2 3 25 25 H 1.08996 * 109.47429 * 295.33857 * 4 2 1 26 26 H 1.09002 * 109.46883 * 55.33809 * 4 2 1 27 27 H 0.97000 * 120.00356 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.91783 * 333.50267 * 14 13 2 29 29 H 1.08997 * 109.91714 * 94.60692 * 14 13 2 30 30 H 1.08994 * 110.31237 * 120.14208 * 15 14 13 31 31 H 1.09005 * 110.30979 * 242.21192 * 15 14 13 32 32 H 1.09007 * 115.54648 * 275.78053 * 18 16 15 33 33 H 1.08996 * 117.50186 * 359.97438 * 19 18 16 34 34 H 1.09007 * 117.50264 * 145.02102 * 19 18 16 35 35 H 1.09003 * 117.50411 * 252.51049 * 20 19 18 36 36 H 1.09006 * 117.50050 * 107.48787 * 20 19 18 37 37 H 1.09005 * 110.66153 * 278.14956 * 21 13 2 38 38 H 1.08993 * 110.67147 * 41.27762 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5426 -0.6221 -1.3083 6 1 4.0738 -0.0297 -0.5780 7 6 4.2391 -1.2876 -2.2947 8 7 3.5923 -2.0085 -3.1843 9 14 6.1017 -1.1651 -2.3676 10 1 6.7014 -2.2540 -1.5553 11 1 6.5514 -1.2936 -3.7769 12 1 6.5327 0.1497 -1.8282 13 7 2.0197 -0.6924 1.1995 14 6 1.6203 -2.1165 1.1895 15 6 1.3607 -2.5231 2.6520 16 6 1.6063 -1.2392 3.4776 17 1 2.6175 -1.2299 3.8845 18 6 0.5727 -1.1103 4.5983 19 6 1.0925 -0.8327 6.0102 20 6 0.5374 -2.2140 5.6573 21 6 1.4223 -0.1129 2.4298 22 1 -0.3633 0.4047 -0.9445 23 1 -0.3633 -1.0205 0.1218 24 1 -0.3633 0.6157 0.8228 25 1 1.7465 -1.7703 -1.2084 26 1 1.6100 -0.2580 -2.1372 27 1 4.0822 -2.4764 -3.8785 28 1 0.7110 -2.2430 0.6020 29 1 2.4217 -2.7239 0.7688 30 1 0.3314 -2.8602 2.7739 31 1 2.0537 -3.3080 2.9552 32 1 -0.3762 -0.6563 4.3127 33 1 2.1708 -0.7423 6.1409 34 1 0.4856 -0.1958 6.6539 35 1 -0.4347 -2.4860 6.0686 36 1 1.2506 -3.0321 5.5556 37 1 1.9603 0.7855 2.7322 38 1 0.3647 0.1032 2.2789 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591021911.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:35 Heat of formation + Delta-G solvation = 2.208175 kcal Electronic energy + Delta-G solvation = -15810.680426 eV Core-core repulsion = 13459.663024 eV Total energy + Delta-G solvation = -2351.017401 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61423 -38.07063 -35.41990 -33.89343 -30.29076 -29.64636 -28.96573 -25.30681 -23.55939 -23.15120 -22.76567 -20.85565 -19.81371 -18.37672 -17.21998 -16.83065 -16.43156 -15.90216 -15.21374 -14.79886 -14.73817 -14.32022 -13.72779 -13.44917 -13.32923 -12.95960 -12.76115 -12.58819 -12.48925 -12.37888 -12.30466 -12.28873 -11.95515 -11.75833 -11.33870 -11.17638 -11.01411 -10.94558 -10.63212 -10.48990 -8.96966 -8.11644 -6.17018 1.40400 1.41606 1.52609 2.46141 2.94563 3.17602 3.29937 3.73362 3.85383 3.95797 4.14773 4.19603 4.25575 4.37052 4.42483 4.52200 4.57867 4.68297 4.78141 4.79360 4.86152 4.98129 4.98868 5.10577 5.12896 5.19241 5.23763 5.32456 5.34223 5.34558 5.45039 5.51609 5.71030 5.88222 6.29038 6.31394 6.52599 6.96377 7.48933 9.00331 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.006653 C = 0.006185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.521789 B = 4207.461648 C = 4525.667697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.083 3.917 3 H 0.063 0.937 4 C 0.033 3.967 5 C -0.502 4.502 6 H 0.054 0.946 7 C -0.004 4.004 8 N -0.939 5.939 9 Si 0.957 3.043 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.267 1.267 13 N -0.514 5.514 14 C 0.042 3.958 15 C -0.112 4.112 16 C -0.051 4.051 17 H 0.072 0.928 18 C -0.149 4.149 19 C -0.176 4.176 20 C -0.175 4.175 21 C 0.035 3.965 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.073 0.927 25 H -0.001 1.001 26 H -0.010 1.010 27 H 0.259 0.741 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.227 1.332 16.572 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.026 4.026 3 H 0.081 0.919 4 C -0.004 4.004 5 C -0.541 4.541 6 H 0.073 0.927 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.783 3.217 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.191 1.191 13 N -0.238 5.238 14 C -0.086 4.086 15 C -0.150 4.150 16 C -0.070 4.070 17 H 0.090 0.910 18 C -0.167 4.167 19 C -0.213 4.213 20 C -0.212 4.212 21 C -0.093 4.093 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.091 0.909 25 H 0.018 0.982 26 H 0.008 0.992 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.616 1.296 16.407 17.738 hybrid contribution 0.192 -0.246 -0.833 0.890 sum -6.424 1.049 15.573 16.879 Atomic orbital electron populations 1.22407 0.97092 1.01698 1.02173 1.21730 0.92272 0.97541 0.91040 0.91878 1.19090 0.95282 0.94538 0.91488 1.21466 0.93189 1.28295 1.11127 0.92734 1.25848 1.03007 0.95479 0.95638 1.70090 1.37104 1.33553 1.17384 0.85561 0.80503 0.78665 0.76969 1.20349 1.20979 1.19105 1.64822 1.55177 1.02022 1.01757 1.22682 0.98281 0.90498 0.97125 1.22386 1.02078 0.97880 0.92699 1.21544 0.98168 0.93814 0.93506 0.90964 1.22199 0.99989 1.04865 0.89649 1.23070 1.01386 0.99387 0.97434 1.22977 1.03211 0.92362 1.02628 1.23400 0.98419 0.97853 0.89597 0.92542 0.92888 0.90856 0.98221 0.99225 0.93212 0.94409 0.93890 0.90290 0.91230 0.87464 0.89028 0.87718 0.87751 0.89060 0.90729 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.99 8.35 71.98 0.60 -5.39 16 2 C 0.08 3.51 2.48 44.91 0.11 3.62 16 3 H 0.06 2.73 8.14 -2.38 -0.02 2.71 16 4 C 0.03 1.78 4.24 29.85 0.13 1.91 16 5 C -0.50 -29.37 8.83 25.60 0.23 -29.14 16 6 H 0.05 3.18 7.75 -2.91 -0.02 3.16 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.25 16 8 N -0.94 -58.55 13.29 21.45 0.28 -58.26 16 9 Si 0.96 46.38 29.54 68.60 2.03 48.40 16 10 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 N -0.51 -20.26 5.06 -857.85 -4.34 -24.60 16 14 C 0.04 1.60 5.05 86.45 0.44 2.04 16 15 C -0.11 -3.17 6.26 31.48 0.20 -2.97 16 16 C -0.05 -1.32 3.23 -9.59 -0.03 -1.35 16 17 H 0.07 1.97 7.96 -2.39 -0.02 1.95 16 18 C -0.15 -2.95 5.10 -10.80 -0.06 -3.01 16 19 C -0.18 -2.98 10.19 30.59 0.31 -2.67 16 20 C -0.17 -2.97 9.98 30.59 0.31 -2.67 16 21 C 0.03 1.04 5.79 86.65 0.50 1.54 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.05 1.81 6.00 -2.38 -0.01 1.79 16 24 H 0.07 2.08 6.35 -2.39 -0.02 2.07 16 25 H 0.00 -0.03 6.66 -2.39 -0.02 -0.05 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.26 15.28 8.31 -92.71 -0.77 14.50 16 28 H 0.04 1.46 5.30 -2.39 -0.01 1.45 16 29 H 0.04 1.93 8.11 -2.39 -0.02 1.91 16 30 H 0.08 1.96 7.85 -2.39 -0.02 1.94 16 31 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.11 2.03 7.95 -2.38 -0.02 2.01 16 33 H 0.09 1.60 8.08 -2.39 -0.02 1.58 16 34 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 35 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 37 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 38 H 0.06 1.59 5.34 -2.39 -0.01 1.58 16 Total: -1.00 -64.96 294.94 2.17 -62.79 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.01 Total: 9.52 kcal Atomic # 6 Polarization: -41.04 SS G_CDS: 3.19 Total: -37.85 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -4.06 Total: -82.86 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -64.96 2.17 -62.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591021911.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.994 kcal (2) G-P(sol) polarization free energy of solvation -64.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds