Wall clock time and date at job start Sun Mar 29 2020 21:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46643 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99739 * 2 1 3 5 5 C 1.50690 * 109.47103 * 181.96871 * 4 2 1 6 6 H 1.08006 * 120.00375 * 5.05622 * 5 4 2 7 7 C 1.37877 * 120.00188 * 185.05839 * 5 4 2 8 8 N 1.31515 * 120.00449 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99663 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47071 * 90.00205 * 9 7 5 11 11 H 1.48501 * 109.47167 * 210.00141 * 9 7 5 12 12 H 1.48502 * 109.47220 * 330.00106 * 9 7 5 13 13 N 1.46898 * 109.47335 * 239.99991 * 2 1 3 14 14 C 1.46785 * 110.99498 * 301.77392 * 13 2 1 15 15 C 1.53004 * 109.89462 * 188.88446 * 14 13 2 16 16 C 1.53326 * 109.19882 * 297.74506 * 15 14 13 17 17 C 1.53240 * 108.50613 * 54.28566 * 16 15 14 18 18 C 1.52794 * 117.71862 * 93.86077 * 17 16 15 19 19 C 1.52758 * 117.78151 * 162.80282 * 17 16 15 20 20 C 1.47046 * 110.99944 * 65.98510 * 13 2 1 21 21 H 1.08996 * 109.47259 * 300.00135 * 1 2 3 22 22 H 1.09002 * 109.46829 * 60.00026 * 1 2 3 23 23 H 1.08998 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46713 * 301.97135 * 4 2 1 25 25 H 1.08996 * 109.46770 * 61.96620 * 4 2 1 26 26 H 0.97000 * 120.00230 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.39880 * 68.75824 * 14 13 2 28 28 H 1.08995 * 109.32741 * 308.96953 * 14 13 2 29 29 H 1.08998 * 109.51839 * 57.66997 * 15 14 13 30 30 H 1.09005 * 109.51422 * 177.82979 * 15 14 13 31 31 H 1.09002 * 109.63373 * 173.98652 * 16 15 14 32 32 H 1.08993 * 109.63142 * 294.58280 * 16 15 14 33 33 H 1.08997 * 117.50587 * 215.24933 * 18 17 16 34 34 H 1.09003 * 117.50077 * 0.31316 * 18 17 16 35 35 H 1.09001 * 117.50083 * 359.80329 * 19 17 16 36 36 H 1.08996 * 117.50388 * 144.85080 * 19 17 16 37 37 H 1.09001 * 109.56935 * 297.65118 * 20 13 2 38 38 H 1.08998 * 109.56817 * 57.88049 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5462 -0.6791 1.2739 6 1 4.0831 -0.1181 0.5232 7 6 4.2389 -1.3567 2.2547 8 7 5.5533 -1.3195 2.2766 9 14 3.3102 -2.3265 3.5535 10 1 3.1088 -3.7199 3.0810 11 1 4.0932 -2.3400 4.8152 12 1 1.9904 -1.6906 3.7966 13 7 2.0198 -0.6925 -1.1994 14 6 1.5147 -2.0696 -1.2546 15 6 2.2090 -2.8339 -2.3838 16 6 1.8771 -2.1657 -3.7233 17 6 2.2473 -0.6815 -3.6315 18 6 3.6321 -0.2628 -4.1228 19 6 2.3877 0.0993 -4.9368 20 6 1.6687 0.0520 -2.4179 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6481 -0.2281 2.1388 25 1 1.7058 -1.7585 1.2318 26 1 6.0406 -1.7966 2.9664 27 1 0.4400 -2.0541 -1.4353 28 1 1.7152 -2.5657 -0.3050 29 1 3.2873 -2.8171 -2.2257 30 1 1.8578 -3.8658 -2.3947 31 1 2.4516 -2.6377 -4.5203 32 1 0.8111 -2.2652 -3.9279 33 1 4.1345 0.5421 -3.5863 34 1 4.2829 -1.0427 -4.5183 35 1 2.2200 -0.4422 -5.8678 36 1 2.0716 1.1425 -4.9359 37 1 0.5842 0.1109 -2.5100 38 1 2.0856 1.0576 -2.3642 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591028385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:25 Heat of formation + Delta-G solvation = 19.190236 kcal Electronic energy + Delta-G solvation = -16230.373294 eV Core-core repulsion = 13880.092290 eV Total energy + Delta-G solvation = -2350.281004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.38871 -36.60051 -33.23319 -32.23350 -30.16319 -27.78256 -27.15894 -24.22430 -22.36542 -22.27478 -21.67906 -18.79192 -18.11843 -16.52913 -15.61062 -15.18434 -14.56618 -14.15062 -14.05952 -13.40626 -13.16422 -12.98304 -12.46311 -12.27466 -12.04427 -11.71738 -11.57408 -11.43986 -11.24087 -10.79823 -10.78626 -10.48366 -10.21813 -9.87041 -9.82945 -9.66823 -9.49848 -9.33175 -8.95339 -8.39087 -7.39462 -5.87942 -3.81498 3.36405 3.44466 3.46922 3.95214 4.56149 4.63621 4.86641 5.03343 5.18848 5.29476 5.45455 5.48755 5.60713 5.70566 5.79659 5.81369 5.86993 5.88559 5.95999 6.02111 6.12090 6.17236 6.19277 6.28293 6.34715 6.41339 6.47838 6.59231 6.67250 6.77187 6.84494 7.18973 7.35188 7.86706 7.91498 8.03397 8.75419 9.25528 9.75084 11.26169 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.008517 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.223716 B = 3286.605288 C = 3506.676082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 H 0.074 0.926 4 C -0.007 4.007 5 C -0.487 4.487 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.908 5.908 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.503 5.503 14 C 0.058 3.942 15 C -0.114 4.114 16 C -0.079 4.079 17 C -0.114 4.114 18 C -0.159 4.159 19 C -0.184 4.184 20 C 0.092 3.908 21 H 0.055 0.945 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.016 0.984 25 H 0.013 0.987 26 H 0.259 0.741 27 H 0.020 0.980 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 0.076 -11.241 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.013 4.013 3 H 0.092 0.908 4 C -0.045 4.045 5 C -0.525 4.525 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.226 5.226 14 C -0.070 4.070 15 C -0.152 4.152 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.196 4.196 19 C -0.221 4.221 20 C -0.036 4.036 21 H 0.074 0.926 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.034 0.966 25 H 0.032 0.968 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.619 -0.011 -11.094 14.048 hybrid contribution -1.251 -0.544 0.700 1.534 sum -9.870 -0.555 -10.393 14.344 Atomic orbital electron populations 1.22568 0.99869 1.01323 1.00912 1.21676 0.89767 0.98494 0.91317 0.90811 1.19709 0.98114 0.94923 0.91706 1.21030 0.88939 1.30430 1.12127 0.90283 1.25001 0.94640 0.96622 0.97507 1.69911 1.06058 1.44070 1.34773 0.86933 0.80351 0.80917 0.81914 1.20599 1.21649 1.19399 1.61982 1.59024 1.01142 1.00425 1.22017 0.94992 0.90347 0.99680 1.21572 1.02484 0.97468 0.93647 1.21171 1.00131 0.92491 0.97861 1.21398 1.00584 0.95288 0.94143 1.22902 0.90555 1.03371 1.02735 1.22963 1.03824 1.00494 0.94852 1.21630 0.96612 0.96566 0.88790 0.92597 0.93715 0.92965 0.96612 0.96848 0.93130 0.96231 0.89748 0.90506 0.92323 0.92300 0.92448 0.88593 0.89250 0.89324 0.89255 0.95392 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.09 8.50 37.16 0.32 -2.78 16 2 C 0.10 1.91 2.32 -67.71 -0.16 1.75 16 3 H 0.07 1.51 8.11 -51.93 -0.42 1.09 16 4 C -0.01 -0.17 3.31 -27.89 -0.09 -0.26 16 5 C -0.49 -13.84 9.31 -34.45 -0.32 -14.16 16 6 H 0.08 2.47 7.99 -52.48 -0.42 2.05 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 9 Si 0.87 21.98 27.37 -169.99 -4.65 17.33 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.53 6.69 56.52 0.38 -6.15 16 13 N -0.50 -9.66 4.27 -226.53 -0.97 -10.63 16 14 C 0.06 1.03 4.49 -3.88 -0.02 1.01 16 15 C -0.11 -1.81 6.12 -26.56 -0.16 -1.97 16 16 C -0.08 -1.09 5.76 -26.44 -0.15 -1.24 16 17 C -0.11 -1.66 2.11 -154.54 -0.33 -1.99 16 18 C -0.16 -2.26 9.92 -26.81 -0.27 -2.52 16 19 C -0.18 -2.25 10.00 -26.83 -0.27 -2.51 16 20 C 0.09 1.49 4.88 -3.67 -0.02 1.47 16 21 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 22 H 0.04 0.66 6.60 -51.93 -0.34 0.32 16 23 H 0.05 0.85 6.58 -51.93 -0.34 0.51 16 24 H 0.02 0.38 7.55 -51.93 -0.39 -0.01 16 25 H 0.01 0.32 5.31 -51.93 -0.28 0.04 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.02 0.32 6.77 -51.93 -0.35 -0.03 16 28 H 0.08 1.70 5.88 -51.93 -0.31 1.40 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.03 0.43 6.59 -51.93 -0.34 0.09 16 38 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 LS Contribution 289.67 15.07 4.37 4.37 Total: -1.00 -30.20 289.67 -8.62 -38.82 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -6.57 Total: -0.76 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: -1.56 Total: -21.48 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.19 Total: -38.27 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.65 Total: 17.33 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -30.20 -8.62 -38.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591028385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.006 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds