Wall clock time and date at job start Sun Mar 29 2020 21:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46643 * 2 1 4 4 C 1.53001 * 109.47170 * 119.99739 * 2 1 3 5 5 C 1.50690 * 109.47103 * 181.96871 * 4 2 1 6 6 H 1.08006 * 120.00375 * 5.05622 * 5 4 2 7 7 C 1.37877 * 120.00188 * 185.05839 * 5 4 2 8 8 N 1.31515 * 120.00449 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99663 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47071 * 90.00205 * 9 7 5 11 11 H 1.48501 * 109.47167 * 210.00141 * 9 7 5 12 12 H 1.48502 * 109.47220 * 330.00106 * 9 7 5 13 13 N 1.46898 * 109.47335 * 239.99991 * 2 1 3 14 14 C 1.46785 * 110.99498 * 301.77392 * 13 2 1 15 15 C 1.53004 * 109.89462 * 188.88446 * 14 13 2 16 16 C 1.53326 * 109.19882 * 297.74506 * 15 14 13 17 17 C 1.53240 * 108.50613 * 54.28566 * 16 15 14 18 18 C 1.52794 * 117.71862 * 93.86077 * 17 16 15 19 19 C 1.52758 * 117.78151 * 162.80282 * 17 16 15 20 20 C 1.47046 * 110.99944 * 65.98510 * 13 2 1 21 21 H 1.08996 * 109.47259 * 300.00135 * 1 2 3 22 22 H 1.09002 * 109.46829 * 60.00026 * 1 2 3 23 23 H 1.08998 * 109.46913 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46713 * 301.97135 * 4 2 1 25 25 H 1.08996 * 109.46770 * 61.96620 * 4 2 1 26 26 H 0.97000 * 120.00230 * 180.02562 * 8 7 5 27 27 H 1.08998 * 109.39880 * 68.75824 * 14 13 2 28 28 H 1.08995 * 109.32741 * 308.96953 * 14 13 2 29 29 H 1.08998 * 109.51839 * 57.66997 * 15 14 13 30 30 H 1.09005 * 109.51422 * 177.82979 * 15 14 13 31 31 H 1.09002 * 109.63373 * 173.98652 * 16 15 14 32 32 H 1.08993 * 109.63142 * 294.58280 * 16 15 14 33 33 H 1.08997 * 117.50587 * 215.24933 * 18 17 16 34 34 H 1.09003 * 117.50077 * 0.31316 * 18 17 16 35 35 H 1.09001 * 117.50083 * 359.80329 * 19 17 16 36 36 H 1.08996 * 117.50388 * 144.85080 * 19 17 16 37 37 H 1.09001 * 109.56935 * 297.65118 * 20 13 2 38 38 H 1.08998 * 109.56817 * 57.88049 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5462 -0.6791 1.2739 6 1 4.0831 -0.1181 0.5232 7 6 4.2389 -1.3567 2.2547 8 7 5.5533 -1.3195 2.2766 9 14 3.3102 -2.3265 3.5535 10 1 3.1088 -3.7199 3.0810 11 1 4.0932 -2.3400 4.8152 12 1 1.9904 -1.6906 3.7966 13 7 2.0198 -0.6925 -1.1994 14 6 1.5147 -2.0696 -1.2546 15 6 2.2090 -2.8339 -2.3838 16 6 1.8771 -2.1657 -3.7233 17 6 2.2473 -0.6815 -3.6315 18 6 3.6321 -0.2628 -4.1228 19 6 2.3877 0.0993 -4.9368 20 6 1.6687 0.0520 -2.4179 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.6481 -0.2281 2.1388 25 1 1.7058 -1.7585 1.2318 26 1 6.0406 -1.7966 2.9664 27 1 0.4400 -2.0541 -1.4353 28 1 1.7152 -2.5657 -0.3050 29 1 3.2873 -2.8171 -2.2257 30 1 1.8578 -3.8658 -2.3947 31 1 2.4516 -2.6377 -4.5203 32 1 0.8111 -2.2652 -3.9279 33 1 4.1345 0.5421 -3.5863 34 1 4.2829 -1.0427 -4.5183 35 1 2.2200 -0.4422 -5.8678 36 1 2.0716 1.1425 -4.9359 37 1 0.5842 0.1109 -2.5100 38 1 2.0856 1.0576 -2.3642 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591028385.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:25 Heat of formation + Delta-G solvation = 0.765904 kcal Electronic energy + Delta-G solvation = -16231.172233 eV Core-core repulsion = 13880.092290 eV Total energy + Delta-G solvation = -2351.079943 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.67571 -37.94649 -34.97123 -33.98510 -31.78108 -29.47002 -28.45473 -25.67488 -24.16093 -23.48194 -22.92358 -20.33182 -19.35640 -18.76089 -17.03740 -16.50623 -16.16360 -15.68521 -15.49156 -14.77440 -14.66962 -14.39713 -14.06633 -13.93733 -13.52965 -13.27770 -12.98589 -12.76677 -12.61211 -12.32093 -12.19056 -11.88434 -11.78576 -11.69946 -11.31842 -11.24950 -11.15721 -10.79279 -10.65515 -10.43912 -8.79490 -8.16421 -6.14904 1.35918 1.37715 1.48753 2.41872 2.80343 3.16762 3.36786 3.73894 3.89160 4.04413 4.14005 4.17868 4.25552 4.42457 4.45036 4.54072 4.66239 4.69406 4.73797 4.82958 4.88294 4.92311 5.03293 5.06102 5.10276 5.12202 5.18574 5.23282 5.28416 5.32877 5.46938 5.50247 5.56295 5.76061 6.40874 6.51465 6.59126 6.92850 7.45150 9.01260 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.031730 B = 0.008517 C = 0.007983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.223716 B = 3286.605288 C = 3506.676082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.057 0.943 4 C -0.004 4.004 5 C -0.485 4.485 6 H 0.032 0.968 7 C -0.003 4.003 8 N -0.958 5.958 9 Si 0.942 3.058 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.533 5.533 14 C 0.059 3.941 15 C -0.112 4.112 16 C -0.071 4.071 17 C -0.131 4.131 18 C -0.179 4.179 19 C -0.150 4.150 20 C 0.095 3.905 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.260 0.740 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.130 -0.626 -12.248 17.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 H 0.076 0.924 4 C -0.041 4.041 5 C -0.524 4.524 6 H 0.050 0.950 7 C -0.198 4.198 8 N -0.601 5.601 9 Si 0.767 3.233 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.257 5.257 14 C -0.069 4.069 15 C -0.150 4.150 16 C -0.109 4.109 17 C -0.132 4.132 18 C -0.216 4.216 19 C -0.188 4.188 20 C -0.032 4.032 21 H 0.083 0.917 22 H 0.083 0.917 23 H 0.076 0.924 24 H 0.036 0.964 25 H 0.037 0.963 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.062 0.938 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.483 -0.701 -12.116 16.708 hybrid contribution -0.278 -0.258 0.957 1.029 sum -11.761 -0.958 -11.159 16.241 Atomic orbital electron populations 1.22405 0.96489 1.02112 1.02381 1.21485 0.92379 0.97009 0.90291 0.92446 1.19647 0.94692 0.95822 0.93965 1.21234 0.91554 1.29055 1.10517 0.94965 1.25931 0.95470 0.98095 1.00262 1.70087 1.08124 1.45768 1.36138 0.85783 0.79593 0.79488 0.78466 1.19645 1.21496 1.17188 1.61878 1.60417 1.02123 1.01296 1.21983 0.96377 0.89528 0.98968 1.21553 1.00153 0.98815 0.94514 1.21141 1.01517 0.91500 0.96695 1.21488 1.00580 0.96235 0.94882 1.22894 0.91228 1.03312 1.04215 1.23028 1.00483 1.00920 0.94330 1.21624 0.97553 0.95925 0.88140 0.91729 0.91696 0.92402 0.96354 0.96250 0.93119 0.94082 0.92726 0.93888 0.90188 0.90793 0.90496 0.90682 0.88975 0.86995 0.88282 0.93755 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.30 8.50 71.98 0.61 -4.69 16 2 C 0.10 3.82 2.32 44.92 0.10 3.93 16 3 H 0.06 2.41 8.11 -2.39 -0.02 2.39 16 4 C 0.00 -0.18 3.31 29.85 0.10 -0.08 16 5 C -0.49 -28.55 9.31 25.60 0.24 -28.31 16 6 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 7 C 0.00 -0.18 5.47 84.65 0.46 0.29 16 8 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 9 Si 0.94 45.63 27.37 68.60 1.88 47.51 16 10 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 11 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 12 H -0.25 -11.10 6.69 99.48 0.67 -10.43 16 13 N -0.53 -20.45 4.27 -870.59 -3.72 -24.17 16 14 C 0.06 2.06 4.49 86.33 0.39 2.44 16 15 C -0.11 -3.44 6.12 30.70 0.19 -3.26 16 16 C -0.07 -1.77 5.76 30.78 0.18 -1.59 16 17 C -0.13 -3.60 2.11 -52.20 -0.11 -3.71 16 18 C -0.18 -5.03 9.92 30.54 0.30 -4.73 16 19 C -0.15 -3.25 10.00 30.53 0.31 -2.94 16 20 C 0.10 2.97 4.88 86.32 0.42 3.39 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.06 1.71 6.60 -2.39 -0.02 1.69 16 23 H 0.06 1.69 6.58 -2.39 -0.02 1.68 16 24 H 0.02 0.86 7.55 -2.39 -0.02 0.84 16 25 H 0.02 0.90 5.31 -2.39 -0.01 0.89 16 26 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 27 H 0.04 1.24 6.77 -2.39 -0.02 1.22 16 28 H 0.05 2.19 5.88 -2.39 -0.01 2.17 16 29 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.07 1.63 8.08 -2.39 -0.02 1.61 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 34 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.24 6.59 -2.39 -0.02 1.22 16 38 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 Total: -1.00 -67.48 289.67 2.61 -64.87 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.96 Total: 13.02 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 3.19 Total: -39.27 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.42 Total: -86.13 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.51 kcal Total: -67.48 2.61 -64.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591028385.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.633 kcal (2) G-P(sol) polarization free energy of solvation -67.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds