Wall clock time and date at job start Sun Mar 29 2020 21:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.53004 * 109.46987 * 120.00133 * 2 1 3 5 5 C 1.50701 * 109.47078 * 185.00130 * 4 2 1 6 6 H 1.08001 * 119.99728 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00117 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99780 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47199 * 59.99901 * 9 7 5 11 11 H 1.48506 * 109.46545 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47047 * 299.99427 * 9 7 5 13 13 N 1.46903 * 109.46963 * 239.99634 * 2 1 3 14 14 C 1.46901 * 110.99594 * 108.35382 * 13 2 1 15 15 H 1.08998 * 109.26744 * 34.50675 * 14 13 2 16 16 C 1.52866 * 109.24044 * 275.01748 * 14 13 2 17 17 C 1.53303 * 108.59134 * 184.86543 * 16 14 13 18 18 C 1.53153 * 108.37361 * 74.65002 * 17 16 14 19 19 C 1.52712 * 110.00239 * 305.00904 * 18 17 16 20 20 H 1.09002 * 115.39115 * 231.80293 * 19 18 17 21 21 C 1.53644 * 115.14952 * 90.39288 * 19 18 17 22 22 C 1.52072 * 109.26400 * 154.00993 * 14 13 2 23 23 H 1.09003 * 114.63807 * 287.07557 * 22 14 13 24 24 H 1.09003 * 109.47084 * 299.20312 * 1 2 3 25 25 H 1.08998 * 109.47046 * 59.19885 * 1 2 3 26 26 H 1.09004 * 109.47519 * 179.20288 * 1 2 3 27 27 H 1.09001 * 109.46986 * 304.99415 * 4 2 1 28 28 H 1.08995 * 109.47115 * 64.99617 * 4 2 1 29 29 H 0.97006 * 119.99678 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99958 * 232.30892 * 13 2 1 31 31 H 1.09001 * 109.61887 * 304.59907 * 16 14 13 32 32 H 1.08998 * 109.61704 * 64.95480 * 16 14 13 33 33 H 1.09003 * 109.61496 * 194.17440 * 17 16 14 34 34 H 1.08996 * 109.61768 * 314.53000 * 17 16 14 35 35 H 1.08991 * 110.27107 * 184.31697 * 18 17 16 36 36 H 1.09000 * 108.59326 * 64.64925 * 18 17 16 37 37 H 1.08997 * 117.54093 * 355.30563 * 21 19 18 38 38 H 1.08999 * 117.54145 * 140.55987 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0862 0.5392 7 6 4.2304 -1.1936 2.3578 8 7 3.5764 -1.8379 3.2995 9 14 6.0922 -1.0623 2.4361 10 1 6.4855 0.3684 2.4958 11 1 6.5871 -1.7623 3.6487 12 1 6.6838 -1.6883 1.2264 13 7 2.0196 -0.6926 -1.1994 14 6 2.6022 0.2585 -2.1555 15 1 3.0928 1.0635 -1.6083 16 6 1.4896 0.8444 -3.0247 17 6 2.1253 1.7396 -4.0946 18 6 2.7701 0.8416 -5.1545 19 6 3.7527 -0.1231 -4.4943 20 1 4.7525 -0.1416 -4.9282 21 6 3.1527 -1.4678 -4.0558 22 6 3.6284 -0.4610 -3.0168 23 1 4.5583 -0.7083 -2.5046 24 1 -0.3633 0.5014 0.8971 25 1 -0.3633 0.5262 -0.8827 26 1 -0.3634 -1.0276 -0.0143 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 4.0608 -2.2447 4.0349 30 1 2.6832 -1.4126 -0.9557 31 1 0.9365 0.0369 -3.5045 32 1 0.8133 1.4336 -2.4054 33 1 1.3566 2.3576 -4.5586 34 1 2.8805 2.3779 -3.6361 35 1 3.2979 1.4466 -5.8916 36 1 1.9849 0.2728 -5.6525 37 1 2.0772 -1.6017 -4.1722 38 1 3.7576 -2.3622 -4.2047 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591040995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:03 Heat of formation + Delta-G solvation = -3.558360 kcal Electronic energy + Delta-G solvation = -15925.057721 eV Core-core repulsion = 13573.790263 eV Total energy + Delta-G solvation = -2351.267457 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.53115 -36.07976 -32.90292 -32.51473 -30.88767 -27.51450 -27.20357 -23.75096 -22.88614 -22.34227 -20.65761 -19.44220 -18.04894 -16.40425 -16.05960 -14.96426 -14.64840 -14.23472 -14.01045 -13.34844 -13.09674 -12.97082 -12.41432 -12.09015 -11.79409 -11.49993 -11.29107 -11.25750 -11.05005 -10.80652 -10.76020 -10.56406 -10.53068 -10.16665 -9.95141 -9.67268 -9.49472 -9.12738 -9.06817 -8.40107 -7.52973 -6.03034 -4.06250 3.29726 3.34897 3.36773 3.94297 4.42466 4.77725 4.85018 5.01961 5.16834 5.28091 5.34666 5.42285 5.56272 5.61490 5.78895 5.82370 5.95189 6.02823 6.06089 6.09595 6.21957 6.28902 6.35422 6.37369 6.46677 6.51374 6.56586 6.65984 6.72586 6.95380 7.04015 7.56346 7.63900 7.96479 8.14284 8.35357 8.40392 9.00401 9.58168 11.07809 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028032 B = 0.008089 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.621833 B = 3460.548747 C = 4098.718585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.085 3.915 3 H 0.040 0.960 4 C 0.011 3.989 5 C -0.523 4.523 6 H 0.051 0.949 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.122 3.878 15 H 0.044 0.956 16 C -0.108 4.108 17 C -0.120 4.120 18 C -0.085 4.085 19 C -0.153 4.153 20 H 0.097 0.903 21 C -0.170 4.170 22 C -0.136 4.136 23 H 0.097 0.903 24 H 0.044 0.956 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.020 0.980 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.354 0.646 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.098 0.902 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 4.253 -14.046 14.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.024 4.024 3 H 0.058 0.942 4 C -0.026 4.026 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.309 5.309 14 C 0.012 3.988 15 H 0.062 0.938 16 C -0.146 4.146 17 C -0.158 4.158 18 C -0.123 4.123 19 C -0.172 4.172 20 H 0.115 0.885 21 C -0.207 4.207 22 C -0.155 4.155 23 H 0.115 0.885 24 H 0.063 0.937 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.174 0.826 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.116 0.884 38 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.675 4.122 -14.158 14.987 hybrid contribution 2.032 0.181 0.685 2.152 sum -0.643 4.303 -13.473 14.158 Atomic orbital electron populations 1.21821 0.96899 1.01030 0.99326 1.21699 0.93322 0.96449 0.90959 0.94218 1.19473 0.95455 0.96014 0.91660 1.21156 0.92200 1.34486 1.08327 0.93066 1.24989 0.98161 0.95220 0.95717 1.69954 1.35558 1.35586 1.11936 0.86714 0.86015 0.78176 0.77435 1.20358 1.21254 1.20261 1.60689 1.42356 1.13855 1.13990 1.20797 0.91868 0.93619 0.92514 0.93821 1.21651 0.97775 0.98612 0.96565 1.21639 0.99687 0.97766 0.96708 1.21070 0.97264 0.96835 0.97098 1.22210 0.99671 0.98198 0.97082 0.88498 1.23017 1.01172 0.92438 1.04061 1.21968 1.00660 1.02434 0.90400 0.88500 0.93711 0.94226 0.93028 0.96181 0.95887 0.92910 0.82583 0.91527 0.92120 0.92336 0.91968 0.92124 0.92013 0.88411 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 9.52 37.16 0.35 -2.08 16 2 C 0.09 1.78 2.60 -67.71 -0.18 1.61 16 3 H 0.04 0.86 7.15 -51.93 -0.37 0.49 16 4 C 0.01 0.29 4.37 -27.88 -0.12 0.17 16 5 C -0.52 -14.42 8.27 -34.44 -0.28 -14.70 16 6 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 13 N -0.68 -13.02 6.14 -100.31 -0.62 -13.63 16 14 C 0.12 2.06 2.47 -68.25 -0.17 1.89 16 15 H 0.04 0.82 7.36 -51.93 -0.38 0.44 16 16 C -0.11 -1.56 5.13 -26.64 -0.14 -1.70 16 17 C -0.12 -1.46 5.94 -26.50 -0.16 -1.62 16 18 C -0.09 -0.97 5.83 -26.80 -0.16 -1.13 16 19 C -0.15 -1.95 6.23 -90.91 -0.57 -2.52 16 20 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 21 C -0.17 -2.31 9.58 -26.75 -0.26 -2.57 16 22 C -0.14 -2.09 5.26 -91.92 -0.48 -2.58 16 23 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.65 7.08 -51.93 -0.37 0.28 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.35 7.52 7.07 -39.29 -0.28 7.24 16 31 H 0.07 0.98 7.03 -51.93 -0.36 0.61 16 32 H 0.06 0.90 7.12 -51.93 -0.37 0.53 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.79 8.05 -51.93 -0.42 0.37 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.68 8.02 -51.93 -0.42 0.26 16 37 H 0.10 1.36 7.18 -51.93 -0.37 0.98 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 296.31 15.07 4.47 4.47 Total: -1.00 -28.26 296.31 -9.37 -37.63 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -6.69 Total: 4.45 kcal Atomic # 6 Polarization: -21.34 SS G_CDS: -2.25 Total: -23.60 kcal Atomic # 7 Polarization: -39.61 SS G_CDS: 0.12 Total: -39.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.26 -9.37 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591040995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.072 kcal (2) G-P(sol) polarization free energy of solvation -28.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds