Wall clock time and date at job start Sun Mar 29 2020 21:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47250 * 2 1 4 4 C 1.53004 * 109.46987 * 120.00133 * 2 1 3 5 5 C 1.50701 * 109.47078 * 185.00130 * 4 2 1 6 6 H 1.08001 * 119.99728 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00117 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99780 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99768 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47199 * 59.99901 * 9 7 5 11 11 H 1.48506 * 109.46545 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47047 * 299.99427 * 9 7 5 13 13 N 1.46903 * 109.46963 * 239.99634 * 2 1 3 14 14 C 1.46901 * 110.99594 * 108.35382 * 13 2 1 15 15 H 1.08998 * 109.26744 * 34.50675 * 14 13 2 16 16 C 1.52866 * 109.24044 * 275.01748 * 14 13 2 17 17 C 1.53303 * 108.59134 * 184.86543 * 16 14 13 18 18 C 1.53153 * 108.37361 * 74.65002 * 17 16 14 19 19 C 1.52712 * 110.00239 * 305.00904 * 18 17 16 20 20 H 1.09002 * 115.39115 * 231.80293 * 19 18 17 21 21 C 1.53644 * 115.14952 * 90.39288 * 19 18 17 22 22 C 1.52072 * 109.26400 * 154.00993 * 14 13 2 23 23 H 1.09003 * 114.63807 * 287.07557 * 22 14 13 24 24 H 1.09003 * 109.47084 * 299.20312 * 1 2 3 25 25 H 1.08998 * 109.47046 * 59.19885 * 1 2 3 26 26 H 1.09004 * 109.47519 * 179.20288 * 1 2 3 27 27 H 1.09001 * 109.46986 * 304.99415 * 4 2 1 28 28 H 1.08995 * 109.47115 * 64.99617 * 4 2 1 29 29 H 0.97006 * 119.99678 * 180.02562 * 8 7 5 30 30 H 1.00900 * 110.99958 * 232.30892 * 13 2 1 31 31 H 1.09001 * 109.61887 * 304.59907 * 16 14 13 32 32 H 1.08998 * 109.61704 * 64.95480 * 16 14 13 33 33 H 1.09003 * 109.61496 * 194.17440 * 17 16 14 34 34 H 1.08996 * 109.61768 * 314.53000 * 17 16 14 35 35 H 1.08991 * 110.27107 * 184.31697 * 18 17 16 36 36 H 1.09000 * 108.59326 * 64.64925 * 18 17 16 37 37 H 1.08997 * 117.54093 * 355.30563 * 21 19 18 38 38 H 1.08999 * 117.54145 * 140.55987 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3128 6 1 4.0789 -0.0862 0.5392 7 6 4.2304 -1.1936 2.3578 8 7 3.5764 -1.8379 3.2995 9 14 6.0922 -1.0623 2.4361 10 1 6.4855 0.3684 2.4958 11 1 6.5871 -1.7623 3.6487 12 1 6.6838 -1.6883 1.2264 13 7 2.0196 -0.6926 -1.1994 14 6 2.6022 0.2585 -2.1555 15 1 3.0928 1.0635 -1.6083 16 6 1.4896 0.8444 -3.0247 17 6 2.1253 1.7396 -4.0946 18 6 2.7701 0.8416 -5.1545 19 6 3.7527 -0.1231 -4.4943 20 1 4.7525 -0.1416 -4.9282 21 6 3.1527 -1.4678 -4.0558 22 6 3.6284 -0.4610 -3.0168 23 1 4.5583 -0.7083 -2.5046 24 1 -0.3633 0.5014 0.8971 25 1 -0.3633 0.5262 -0.8827 26 1 -0.3634 -1.0276 -0.0143 27 1 1.6054 -0.2617 2.1370 28 1 1.7516 -1.7715 1.2056 29 1 4.0608 -2.2447 4.0349 30 1 2.6832 -1.4126 -0.9557 31 1 0.9365 0.0369 -3.5045 32 1 0.8133 1.4336 -2.4054 33 1 1.3566 2.3576 -4.5586 34 1 2.8805 2.3779 -3.6361 35 1 3.2979 1.4466 -5.8916 36 1 1.9849 0.2728 -5.6525 37 1 2.0772 -1.6017 -4.1722 38 1 3.7576 -2.3622 -4.2047 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591040995.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:02 Heat of formation + Delta-G solvation = -19.434023 kcal Electronic energy + Delta-G solvation = -15925.746141 eV Core-core repulsion = 13573.790263 eV Total energy + Delta-G solvation = -2351.955878 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.71323 -37.71324 -34.80446 -33.75028 -32.41149 -29.30180 -28.69681 -25.21511 -24.66195 -23.44296 -21.84616 -21.08088 -19.26028 -18.51712 -17.28214 -16.71096 -16.25378 -15.86805 -15.16332 -14.72300 -14.42686 -14.18649 -14.00353 -13.68836 -13.36919 -13.17618 -13.01388 -12.63628 -12.58480 -12.42751 -12.33122 -12.06781 -11.82326 -11.71947 -11.19078 -11.15135 -11.07801 -10.74636 -10.59885 -10.51403 -9.13112 -8.22582 -6.33314 1.35420 1.37156 1.45219 2.36508 2.80515 3.09970 3.51558 3.73314 3.89556 4.10988 4.13935 4.30062 4.32899 4.45240 4.50347 4.63944 4.70219 4.75024 4.80169 4.84769 4.98662 5.04355 5.09152 5.15727 5.21920 5.29472 5.30246 5.38500 5.41903 5.48900 5.49608 5.51090 5.59958 5.81123 6.19468 6.47629 6.67582 6.81777 7.35598 8.88723 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028032 B = 0.008089 C = 0.006830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.621833 B = 3460.548747 C = 4098.718585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.095 3.905 3 H 0.031 0.969 4 C 0.019 3.981 5 C -0.534 4.534 6 H 0.052 0.948 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.267 1.267 13 N -0.671 5.671 14 C 0.123 3.877 15 H 0.019 0.981 16 C -0.102 4.102 17 C -0.116 4.116 18 C -0.084 4.084 19 C -0.133 4.133 20 H 0.111 0.889 21 C -0.165 4.165 22 C -0.163 4.163 23 H 0.078 0.922 24 H 0.048 0.952 25 H 0.062 0.938 26 H 0.047 0.953 27 H -0.007 1.007 28 H -0.003 1.003 29 H 0.263 0.737 30 H 0.339 0.661 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.597 5.031 -16.297 17.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.015 4.015 3 H 0.049 0.951 4 C -0.018 4.018 5 C -0.572 4.572 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.782 3.218 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.192 1.192 13 N -0.301 5.301 14 C 0.013 3.987 15 H 0.037 0.963 16 C -0.140 4.140 17 C -0.154 4.154 18 C -0.122 4.122 19 C -0.152 4.152 20 H 0.129 0.871 21 C -0.202 4.202 22 C -0.182 4.182 23 H 0.096 0.904 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.011 0.989 28 H 0.016 0.984 29 H 0.072 0.928 30 H 0.157 0.843 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.199 4.916 -16.430 17.290 hybrid contribution 1.864 -0.064 1.399 2.332 sum -0.335 4.852 -15.031 15.798 Atomic orbital electron populations 1.21728 0.94575 1.01251 1.00669 1.21526 0.95139 0.95194 0.89637 0.95062 1.19353 0.94833 0.94698 0.92965 1.21457 0.93263 1.34179 1.08293 0.92944 1.25867 1.03235 0.94804 0.95321 1.70084 1.37573 1.36580 1.12645 0.85619 0.79945 0.78446 0.77761 1.19625 1.20758 1.19240 1.60827 1.42141 1.13891 1.13273 1.20851 0.93076 0.92482 0.92307 0.96319 1.21594 0.96775 0.98881 0.96734 1.21623 1.00054 0.97561 0.96165 1.21133 0.97309 0.96673 0.97045 1.22364 1.00791 0.97651 0.94345 0.87084 1.23053 1.01319 0.93122 1.02703 1.21854 0.99748 1.04791 0.91780 0.90404 0.93340 0.91857 0.93372 0.98877 0.98449 0.92768 0.84281 0.91344 0.92682 0.90145 0.92647 0.89886 0.90981 0.88467 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.50 9.52 71.98 0.69 -3.82 16 2 C 0.09 4.05 2.60 44.92 0.12 4.16 16 3 H 0.03 1.38 7.15 -2.39 -0.02 1.36 16 4 C 0.02 1.02 4.37 29.85 0.13 1.15 16 5 C -0.53 -30.17 8.27 25.60 0.21 -29.96 16 6 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 7 C 0.01 0.35 5.46 84.65 0.46 0.81 16 8 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 9 Si 0.96 44.61 29.54 68.60 2.03 46.64 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 N -0.67 -26.15 6.14 -471.26 -2.89 -29.04 16 14 C 0.12 4.11 2.47 44.56 0.11 4.22 16 15 H 0.02 0.72 7.36 -2.39 -0.02 0.70 16 16 C -0.10 -2.77 5.13 30.65 0.16 -2.62 16 17 C -0.12 -2.50 5.94 30.75 0.18 -2.32 16 18 C -0.08 -1.61 5.83 30.55 0.18 -1.43 16 19 C -0.13 -3.05 6.23 -10.98 -0.07 -3.12 16 20 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 21 C -0.16 -4.21 9.58 30.58 0.29 -3.92 16 22 C -0.16 -4.92 5.26 -11.64 -0.06 -4.98 16 23 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.99 7.08 -2.39 -0.02 1.97 16 26 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 27 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 28 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 29 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 30 H 0.34 14.86 7.07 -89.69 -0.63 14.22 16 31 H 0.07 1.85 7.03 -2.39 -0.02 1.84 16 32 H 0.05 1.55 7.12 -2.39 -0.02 1.53 16 33 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.05 1.28 8.05 -2.39 -0.02 1.26 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.07 1.28 8.02 -2.39 -0.02 1.26 16 37 H 0.10 2.50 7.18 -2.39 -0.02 2.49 16 38 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -61.40 296.31 2.19 -59.20 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.38 Total: 21.40 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 2.40 Total: -41.82 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -2.61 Total: -85.43 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -61.40 2.19 -59.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591040995.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.771 kcal (2) G-P(sol) polarization free energy of solvation -61.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds