Wall clock time and date at job start Sun Mar 29 2020 21:42:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46820 * 2 1 4 4 C 1.52998 * 109.46818 * 240.00712 * 2 1 3 5 5 C 1.50707 * 109.46759 * 174.99798 * 4 2 1 6 6 H 1.07992 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99803 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99806 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47080 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47042 * 119.99848 * 9 7 5 12 12 H 1.48498 * 109.47102 * 239.99704 * 9 7 5 13 13 N 1.46894 * 109.47341 * 120.00451 * 2 1 3 14 14 C 1.46906 * 111.00072 * 274.99985 * 13 2 1 15 15 H 1.09000 * 109.26362 * 34.50401 * 14 13 2 16 16 C 1.52866 * 109.26778 * 275.00068 * 14 13 2 17 17 C 1.53305 * 108.59185 * 184.84113 * 16 14 13 18 18 C 1.52880 * 108.57650 * 74.44285 * 17 16 14 19 19 C 1.52713 * 110.15328 * 305.47782 * 18 17 16 20 20 H 1.09002 * 115.38768 * 232.82362 * 19 18 17 21 21 C 1.53646 * 116.02959 * 90.20821 * 19 18 17 22 22 C 1.52063 * 120.52413 * 21.47275 * 19 18 17 23 23 H 1.08998 * 115.93219 * 209.99012 * 22 19 18 24 24 H 1.08994 * 109.47291 * 59.99515 * 1 2 3 25 25 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46813 * 299.99306 * 1 2 3 27 27 H 1.08994 * 109.47240 * 294.99311 * 4 2 1 28 28 H 1.08996 * 109.47531 * 55.00024 * 4 2 1 29 29 H 0.97007 * 120.00196 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00370 * 151.04952 * 13 2 1 31 31 H 1.08997 * 109.61674 * 304.57140 * 16 14 13 32 32 H 1.09001 * 109.61845 * 64.93194 * 16 14 13 33 33 H 1.08995 * 109.62045 * 194.16646 * 17 16 14 34 34 H 1.09000 * 109.61767 * 314.53786 * 17 16 14 35 35 H 1.08999 * 109.35861 * 65.69291 * 18 17 16 36 36 H 1.09002 * 109.35580 * 185.27289 * 18 17 16 37 37 H 1.09007 * 117.54096 * 355.68628 * 21 19 18 38 38 H 1.09003 * 117.54253 * 140.93282 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2304 -1.1932 -2.3580 8 7 3.5765 -1.8382 -3.2992 9 14 6.0922 -1.0619 -2.4363 10 1 6.5837 -0.2915 -1.2659 11 1 6.6855 -2.4230 -2.4182 12 1 6.4872 -0.3663 -3.6874 13 7 2.0197 -0.6925 1.1993 14 6 2.0826 0.2225 2.3469 15 1 1.2616 0.9366 2.2827 16 6 3.4114 0.9775 2.3179 17 6 3.5136 1.8359 3.5839 18 6 3.8147 0.9200 4.7704 19 6 2.7704 -0.1909 4.8558 20 1 2.2812 -0.2989 5.8239 21 6 3.0926 -1.4800 4.0843 22 6 1.9517 -0.5770 3.6339 23 1 0.9500 -0.9582 3.8323 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.7517 -1.7713 -1.2058 28 1 1.6054 -0.2615 -2.1370 29 1 4.0609 -2.2456 -4.0343 30 1 2.9174 -1.1205 1.0286 31 1 4.2363 0.2655 2.2910 32 1 3.4503 1.6161 1.4354 33 1 4.3177 2.5628 3.4694 34 1 2.5705 2.3565 3.7502 35 1 4.8030 0.4780 4.6439 36 1 3.7974 1.5037 5.6908 37 1 3.9971 -1.4906 3.4761 38 1 2.8298 -2.4277 4.5543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591040996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:05 Heat of formation + Delta-G solvation = -4.485102 kcal Electronic energy + Delta-G solvation = -15945.296701 eV Core-core repulsion = 13593.989057 eV Total energy + Delta-G solvation = -2351.307644 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.56283 -36.10736 -32.92975 -32.52943 -30.89293 -27.37119 -27.21818 -24.04315 -22.85264 -22.27172 -20.66822 -19.32369 -18.15508 -16.35977 -16.14617 -14.90924 -14.73522 -14.32885 -13.84020 -13.27904 -13.18407 -13.04334 -12.60545 -11.90924 -11.79906 -11.49477 -11.29347 -11.23259 -11.12355 -10.84885 -10.75913 -10.61403 -10.47182 -10.17733 -10.10743 -9.63158 -9.50677 -9.15280 -9.01186 -8.38507 -7.51069 -6.01506 -4.04090 3.28847 3.36937 3.39542 3.95378 4.43835 4.77984 4.82757 5.00293 5.14516 5.32485 5.34332 5.44634 5.48861 5.62121 5.72358 5.81383 5.92544 6.00385 6.05318 6.07563 6.19097 6.27279 6.28929 6.34674 6.40197 6.48483 6.55281 6.63234 6.66490 6.98079 6.99782 7.59070 7.67136 7.99201 8.13423 8.35201 8.41835 9.02485 9.59916 11.09559 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.008272 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.301872 B = 3384.035125 C = 3956.979519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.029 0.971 4 C 0.020 3.980 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.891 5.891 9 Si 0.888 3.112 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.676 5.676 14 C 0.119 3.881 15 H 0.072 0.928 16 C -0.150 4.150 17 C -0.115 4.115 18 C -0.086 4.086 19 C -0.157 4.157 20 H 0.096 0.904 21 C -0.175 4.175 22 C -0.115 4.115 23 H 0.095 0.905 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.025 0.975 28 H 0.020 0.980 29 H 0.260 0.740 30 H 0.354 0.646 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.566 4.699 13.862 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.022 4.022 3 H 0.047 0.953 4 C -0.018 4.018 5 C -0.559 4.559 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.309 5.309 14 C 0.009 3.991 15 H 0.090 0.910 16 C -0.190 4.190 17 C -0.153 4.153 18 C -0.124 4.124 19 C -0.176 4.176 20 H 0.114 0.886 21 C -0.212 4.212 22 C -0.134 4.134 23 H 0.114 0.886 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.054 0.946 27 H 0.043 0.957 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.176 0.824 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.112 0.888 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.166 4.328 13.835 14.657 hybrid contribution 1.841 0.485 -0.394 1.944 sum -0.326 4.813 13.441 14.280 Atomic orbital electron populations 1.21810 0.96915 1.01261 0.99341 1.21603 0.93159 0.95930 0.91491 0.95334 1.19281 0.95415 0.96190 0.90864 1.21223 0.92237 1.34218 1.08209 0.92885 1.24987 0.98121 0.95274 0.95766 1.69971 1.35337 1.35713 1.12023 0.86609 0.86155 0.77764 0.77908 1.19848 1.20996 1.21092 1.60569 1.34799 1.31557 1.03941 1.20789 0.95753 0.92574 0.90011 0.91015 1.22349 0.99321 0.99626 0.97659 1.21528 1.01290 0.97537 0.94923 1.21011 0.97554 0.95664 0.98141 1.22231 1.01964 0.97279 0.96077 0.88614 1.23000 1.00874 0.93753 1.03605 1.21743 0.96193 1.01512 0.93910 0.88647 0.93451 0.92705 0.94560 0.95655 0.96167 0.93047 0.82412 0.91696 0.91532 0.92409 0.91982 0.91949 0.92186 0.88840 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.40 37.16 0.35 -2.12 16 2 C 0.09 1.82 2.39 -67.72 -0.16 1.66 16 3 H 0.03 0.61 7.15 -51.93 -0.37 0.24 16 4 C 0.02 0.51 4.57 -27.88 -0.13 0.38 16 5 C -0.52 -14.25 8.12 -34.44 -0.28 -14.53 16 6 H 0.05 1.41 7.49 -52.49 -0.39 1.02 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 8 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 9 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.68 -13.02 6.04 -100.31 -0.61 -13.63 16 14 C 0.12 1.92 2.34 -68.25 -0.16 1.76 16 15 H 0.07 1.16 7.09 -51.93 -0.37 0.79 16 16 C -0.15 -2.34 4.93 -26.64 -0.13 -2.48 16 17 C -0.11 -1.46 5.93 -26.64 -0.16 -1.61 16 18 C -0.09 -1.01 5.83 -26.94 -0.16 -1.17 16 19 C -0.16 -1.93 6.19 -90.91 -0.56 -2.49 16 20 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 21 C -0.18 -2.38 9.66 -26.75 -0.26 -2.64 16 22 C -0.11 -1.64 5.59 -91.92 -0.51 -2.16 16 23 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.04 0.59 7.42 -51.93 -0.39 0.20 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.35 7.50 6.88 -39.29 -0.27 7.23 16 31 H 0.06 1.07 7.01 -51.93 -0.36 0.71 16 32 H 0.07 1.14 7.49 -51.93 -0.39 0.75 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.76 8.05 -51.93 -0.42 0.34 16 35 H 0.06 0.74 8.06 -51.93 -0.42 0.32 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 1.37 7.26 -51.92 -0.38 0.99 16 38 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 296.08 15.07 4.46 4.46 Total: -1.00 -28.29 296.08 -9.38 -37.67 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.69 Total: 4.70 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: -2.26 Total: -23.80 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.13 Total: -39.48 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.29 -9.38 -37.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591040996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.183 kcal (2) G-P(sol) polarization free energy of solvation -28.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds