Wall clock time and date at job start Sun Mar 29 2020 21:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46820 * 2 1 4 4 C 1.52998 * 109.46818 * 240.00712 * 2 1 3 5 5 C 1.50707 * 109.46759 * 174.99798 * 4 2 1 6 6 H 1.07992 * 120.00180 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99803 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99993 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99806 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47080 * 359.97438 * 9 7 5 11 11 H 1.48495 * 109.47042 * 119.99848 * 9 7 5 12 12 H 1.48498 * 109.47102 * 239.99704 * 9 7 5 13 13 N 1.46894 * 109.47341 * 120.00451 * 2 1 3 14 14 C 1.46906 * 111.00072 * 274.99985 * 13 2 1 15 15 H 1.09000 * 109.26362 * 34.50401 * 14 13 2 16 16 C 1.52866 * 109.26778 * 275.00068 * 14 13 2 17 17 C 1.53305 * 108.59185 * 184.84113 * 16 14 13 18 18 C 1.52880 * 108.57650 * 74.44285 * 17 16 14 19 19 C 1.52713 * 110.15328 * 305.47782 * 18 17 16 20 20 H 1.09002 * 115.38768 * 232.82362 * 19 18 17 21 21 C 1.53646 * 116.02959 * 90.20821 * 19 18 17 22 22 C 1.52063 * 120.52413 * 21.47275 * 19 18 17 23 23 H 1.08998 * 115.93219 * 209.99012 * 22 19 18 24 24 H 1.08994 * 109.47291 * 59.99515 * 1 2 3 25 25 H 1.08999 * 109.47151 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46813 * 299.99306 * 1 2 3 27 27 H 1.08994 * 109.47240 * 294.99311 * 4 2 1 28 28 H 1.08996 * 109.47531 * 55.00024 * 4 2 1 29 29 H 0.97007 * 120.00196 * 180.02562 * 8 7 5 30 30 H 1.00901 * 111.00370 * 151.04952 * 13 2 1 31 31 H 1.08997 * 109.61674 * 304.57140 * 16 14 13 32 32 H 1.09001 * 109.61845 * 64.93194 * 16 14 13 33 33 H 1.08995 * 109.62045 * 194.16646 * 17 16 14 34 34 H 1.09000 * 109.61767 * 314.53786 * 17 16 14 35 35 H 1.08999 * 109.35861 * 65.69291 * 18 17 16 36 36 H 1.09002 * 109.35580 * 185.27289 * 18 17 16 37 37 H 1.09007 * 117.54096 * 355.68628 * 21 19 18 38 38 H 1.09003 * 117.54253 * 140.93282 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5419 -0.6147 -1.3128 6 1 4.0789 -0.0854 -0.5397 7 6 4.2304 -1.1932 -2.3580 8 7 3.5765 -1.8382 -3.2992 9 14 6.0922 -1.0619 -2.4363 10 1 6.5837 -0.2915 -1.2659 11 1 6.6855 -2.4230 -2.4182 12 1 6.4872 -0.3663 -3.6874 13 7 2.0197 -0.6925 1.1993 14 6 2.0826 0.2225 2.3469 15 1 1.2616 0.9366 2.2827 16 6 3.4114 0.9775 2.3179 17 6 3.5136 1.8359 3.5839 18 6 3.8147 0.9200 4.7704 19 6 2.7704 -0.1909 4.8558 20 1 2.2812 -0.2989 5.8239 21 6 3.0926 -1.4800 4.0843 22 6 1.9517 -0.5770 3.6339 23 1 0.9500 -0.9582 3.8323 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.7517 -1.7713 -1.2058 28 1 1.6054 -0.2615 -2.1370 29 1 4.0609 -2.2456 -4.0343 30 1 2.9174 -1.1205 1.0286 31 1 4.2363 0.2655 2.2910 32 1 3.4503 1.6161 1.4354 33 1 4.3177 2.5628 3.4694 34 1 2.5705 2.3565 3.7502 35 1 4.8030 0.4780 4.6439 36 1 3.7974 1.5037 5.6908 37 1 3.9971 -1.4906 3.4761 38 1 2.8298 -2.4277 4.5543 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591040996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:04 Heat of formation + Delta-G solvation = -20.320556 kcal Electronic energy + Delta-G solvation = -15945.983378 eV Core-core repulsion = 13593.989057 eV Total energy + Delta-G solvation = -2351.994321 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73248 -37.70392 -34.81798 -33.79783 -32.39771 -29.32653 -28.54397 -25.47208 -24.66691 -23.36359 -21.86159 -20.92802 -19.34533 -18.50426 -17.32479 -16.62532 -16.37129 -15.80899 -15.09588 -14.66587 -14.51689 -14.26612 -14.05454 -13.58432 -13.44165 -13.16516 -12.93115 -12.62944 -12.59460 -12.49739 -12.30147 -12.18531 -11.89706 -11.60050 -11.31513 -11.24768 -11.03565 -10.64888 -10.58623 -10.51936 -9.05274 -8.19963 -6.29761 1.36851 1.37815 1.49538 2.38776 2.84439 3.13059 3.52853 3.76452 3.86593 4.09757 4.21102 4.22482 4.33984 4.35248 4.52991 4.58945 4.68231 4.71025 4.76836 4.79799 4.98889 5.00709 5.08316 5.13773 5.22250 5.28237 5.29413 5.34624 5.40600 5.42604 5.50124 5.52203 5.59828 5.84974 6.21652 6.50140 6.70198 6.85682 7.38734 8.92108 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.008272 C = 0.007074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.301872 B = 3384.035125 C = 3956.979519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.097 3.903 3 H 0.024 0.976 4 C 0.027 3.973 5 C -0.528 4.528 6 H 0.058 0.942 7 C 0.004 3.996 8 N -0.931 5.931 9 Si 0.958 3.042 10 H -0.263 1.263 11 H -0.279 1.279 12 H -0.280 1.280 13 N -0.679 5.679 14 C 0.121 3.879 15 H 0.074 0.926 16 C -0.148 4.148 17 C -0.109 4.109 18 C -0.087 4.087 19 C -0.134 4.134 20 H 0.119 0.881 21 C -0.184 4.184 22 C -0.130 4.130 23 H 0.098 0.902 24 H 0.051 0.949 25 H 0.048 0.952 26 H 0.060 0.940 27 H -0.005 1.005 28 H -0.006 1.006 29 H 0.262 0.738 30 H 0.341 0.659 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.964 5.682 16.095 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.013 4.013 3 H 0.042 0.958 4 C -0.010 4.010 5 C -0.567 4.567 6 H 0.076 0.924 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.783 3.217 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.206 1.206 13 N -0.310 5.310 14 C 0.011 3.989 15 H 0.092 0.908 16 C -0.187 4.187 17 C -0.147 4.147 18 C -0.124 4.124 19 C -0.152 4.152 20 H 0.137 0.863 21 C -0.221 4.221 22 C -0.148 4.148 23 H 0.116 0.884 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.014 0.986 28 H 0.012 0.988 29 H 0.071 0.929 30 H 0.160 0.840 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.575 5.326 16.089 17.020 hybrid contribution 1.623 0.175 -1.097 1.966 sum 0.048 5.501 14.992 15.970 Atomic orbital electron populations 1.21723 0.94700 1.01332 1.00804 1.21400 0.94875 0.94813 0.90201 0.95845 1.19139 0.94926 0.94634 0.92320 1.21539 0.93202 1.33767 1.08148 0.92431 1.25879 1.03204 0.94930 0.95423 1.70102 1.37407 1.36833 1.12811 0.85502 0.80048 0.77931 0.78200 1.18739 1.20514 1.20633 1.60629 1.33878 1.32348 1.04115 1.20846 0.96091 0.92380 0.89589 0.90784 1.22271 0.98436 0.99368 0.98598 1.21504 1.02214 0.97419 0.93596 1.21062 0.97146 0.95497 0.98722 1.22356 1.00746 0.96238 0.95892 0.86337 1.23017 0.99901 0.95057 1.04137 1.21674 0.96705 1.02465 0.93994 0.88405 0.92998 0.93318 0.92058 0.98633 0.98814 0.92878 0.83997 0.93135 0.93657 0.91422 0.91106 0.92184 0.89573 0.90383 0.88476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 9.40 71.98 0.68 -3.93 16 2 C 0.10 4.09 2.39 44.92 0.11 4.20 16 3 H 0.02 1.01 7.15 -2.38 -0.02 1.00 16 4 C 0.03 1.44 4.57 29.85 0.14 1.58 16 5 C -0.53 -29.57 8.12 25.60 0.21 -29.36 16 6 H 0.06 3.10 7.49 -2.91 -0.02 3.08 16 7 C 0.00 0.21 5.46 84.66 0.46 0.67 16 8 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 9 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 11 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.68 -26.31 6.04 -471.26 -2.84 -29.15 16 14 C 0.12 3.77 2.34 44.56 0.10 3.87 16 15 H 0.07 2.28 7.09 -2.39 -0.02 2.26 16 16 C -0.15 -4.49 4.93 30.65 0.15 -4.34 16 17 C -0.11 -2.50 5.93 30.66 0.18 -2.32 16 18 C -0.09 -1.75 5.83 30.46 0.18 -1.57 16 19 C -0.13 -2.87 6.19 -10.98 -0.07 -2.94 16 20 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 21 C -0.18 -4.72 9.66 30.58 0.30 -4.42 16 22 C -0.13 -3.47 5.59 -11.64 -0.07 -3.54 16 23 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.06 1.90 7.42 -2.39 -0.02 1.88 16 27 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 28 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 29 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 30 H 0.34 14.75 6.88 -89.69 -0.62 14.14 16 31 H 0.05 1.66 7.01 -2.39 -0.02 1.65 16 32 H 0.04 1.54 7.49 -2.39 -0.02 1.52 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 35 H 0.06 1.26 8.06 -2.39 -0.02 1.24 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.08 2.24 7.26 -2.38 -0.02 2.23 16 38 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -61.34 296.08 2.23 -59.11 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.39 Total: 22.26 kcal Atomic # 6 Polarization: -44.46 SS G_CDS: 2.37 Total: -42.09 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -2.56 Total: -85.76 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -61.34 2.23 -59.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591040996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.791 kcal (2) G-P(sol) polarization free energy of solvation -61.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds