Wall clock time and date at job start Sun Mar 29 2020 21:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47040 * 240.00012 * 2 1 3 5 5 C 1.50696 * 109.47300 * 174.99808 * 4 2 1 6 6 H 1.08002 * 119.99922 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00394 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00088 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99874 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46986 * 90.00165 * 9 7 5 11 11 H 1.48507 * 109.47526 * 210.00103 * 9 7 5 12 12 H 1.48497 * 109.47425 * 330.00059 * 9 7 5 13 13 N 1.46898 * 109.47106 * 120.00256 * 2 1 3 14 14 C 1.46902 * 110.99810 * 253.80261 * 13 2 1 15 15 C 1.52995 * 115.54739 * 175.26316 * 14 13 2 16 16 C 1.53775 * 113.61614 * 64.72250 * 15 14 13 17 17 C 1.53952 * 87.02542 * 220.04418 * 16 15 14 18 18 C 1.53778 * 113.61781 * 327.11568 * 15 14 13 19 19 C 1.52999 * 117.49856 * 29.59948 * 14 13 2 20 20 C 1.53002 * 117.49973 * 320.93717 * 14 13 2 21 21 H 1.09002 * 109.47419 * 294.63248 * 1 2 3 22 22 H 1.09002 * 109.47326 * 54.63446 * 1 2 3 23 23 H 1.09004 * 109.47238 * 174.62658 * 1 2 3 24 24 H 1.08994 * 109.47230 * 295.00416 * 4 2 1 25 25 H 1.09008 * 109.46845 * 55.00175 * 4 2 1 26 26 H 0.97004 * 119.99857 * 180.02562 * 8 7 5 27 27 H 1.00898 * 111.00063 * 17.75924 * 13 2 1 28 28 H 1.09004 * 112.84918 * 195.91422 * 15 14 13 29 29 H 1.09009 * 113.61628 * 334.56649 * 16 15 14 30 30 H 1.09005 * 113.61824 * 105.46702 * 16 15 14 31 31 H 1.09000 * 113.54258 * 270.81440 * 17 16 15 32 32 H 1.09003 * 113.66679 * 139.92761 * 17 16 15 33 33 H 1.09002 * 113.61254 * 254.52808 * 18 15 14 34 34 H 1.08998 * 113.61613 * 25.42636 * 18 15 14 35 35 H 1.09003 * 117.49804 * 359.97438 * 19 14 13 36 36 H 1.09000 * 117.50133 * 145.02033 * 19 14 13 37 37 H 1.09001 * 117.49433 * 214.98116 * 20 14 13 38 38 H 1.09000 * 117.49396 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2303 -1.1926 -2.3584 8 7 5.5410 -1.1002 -2.4135 9 14 3.3013 -2.1065 -3.6967 10 1 2.9406 -1.1606 -4.7831 11 1 4.1596 -3.1870 -4.2457 12 1 2.0652 -2.6986 -3.1252 13 7 2.0197 -0.6925 1.1994 14 6 2.5558 0.2636 2.1773 15 6 2.9919 -0.3360 3.5156 16 6 4.1784 -1.3070 3.3982 17 6 3.4572 -2.1872 4.4351 18 6 2.1461 -1.5428 3.9548 19 6 1.9507 1.6687 2.1964 20 6 3.3594 1.4491 1.6389 21 1 -0.3634 0.4283 0.9341 22 1 -0.3634 0.5948 -0.8380 23 1 -0.3634 -1.0232 -0.0962 24 1 1.7516 -1.7714 -1.2057 25 1 1.6053 -0.2616 -2.1370 26 1 6.0253 -1.5063 -3.1494 27 1 1.2944 -1.2613 1.6099 28 1 3.1182 0.4155 4.2950 29 1 4.2665 -1.7722 2.4163 30 1 5.1202 -0.8912 3.7566 31 1 3.7118 -1.9426 5.4663 32 1 3.5221 -3.2546 4.2238 33 1 1.4493 -1.3171 4.7621 34 1 1.6773 -2.0725 3.1255 35 1 1.1551 1.8838 1.4831 36 1 1.8637 2.1662 3.1624 37 1 4.1985 1.8020 2.2384 38 1 3.4905 1.5193 0.5591 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593081230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:58 Heat of formation + Delta-G solvation = 44.917684 kcal Electronic energy + Delta-G solvation = -16132.811168 eV Core-core repulsion = 13783.645790 eV Total energy + Delta-G solvation = -2349.165378 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.61479 -36.97313 -34.07683 -32.15794 -29.18987 -27.72975 -25.68261 -25.26814 -22.71246 -21.79918 -20.30887 -19.41737 -18.46513 -16.61490 -15.88382 -15.49200 -14.65119 -14.13962 -13.67396 -13.25139 -12.91997 -12.64992 -12.26813 -12.17711 -11.96729 -11.85679 -11.69330 -11.16276 -10.96709 -10.72657 -10.58897 -10.40687 -10.24829 -10.16116 -9.89632 -9.62244 -9.39186 -9.30129 -8.89871 -8.36905 -7.37509 -5.85833 -3.78995 3.39135 3.47023 3.50918 4.23415 4.59557 4.64249 4.90389 4.97943 5.03757 5.24911 5.40026 5.43246 5.49523 5.62554 5.73722 5.79351 5.84001 5.89818 5.96431 6.03897 6.13719 6.19745 6.27231 6.37442 6.40551 6.45400 6.56132 6.60198 6.78137 6.89461 6.92981 7.23297 7.40259 7.90111 7.98386 8.15170 8.77970 9.25604 9.77941 11.28007 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.008946 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.836583 B = 3129.157745 C = 3473.008688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H 0.075 0.925 4 C -0.003 4.003 5 C -0.488 4.488 6 H 0.080 0.920 7 C 0.060 3.940 8 N -0.910 5.910 9 Si 0.873 3.127 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.622 5.622 14 C 0.079 3.921 15 C -0.068 4.068 16 C -0.125 4.125 17 C -0.144 4.144 18 C -0.135 4.135 19 C -0.237 4.237 20 C -0.165 4.165 21 H 0.043 0.957 22 H 0.055 0.945 23 H 0.053 0.947 24 H 0.017 0.983 25 H 0.008 0.992 26 H 0.258 0.742 27 H 0.330 0.670 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 1.539 11.636 14.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.024 4.024 3 H 0.093 0.907 4 C -0.041 4.041 5 C -0.526 4.526 6 H 0.098 0.902 7 C -0.139 4.139 8 N -0.550 5.550 9 Si 0.702 3.298 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.193 1.193 13 N -0.251 5.251 14 C -0.014 4.014 15 C -0.087 4.087 16 C -0.162 4.162 17 C -0.182 4.182 18 C -0.173 4.173 19 C -0.277 4.277 20 C -0.202 4.202 21 H 0.062 0.938 22 H 0.075 0.925 23 H 0.072 0.928 24 H 0.035 0.965 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.150 0.850 28 H 0.103 0.897 29 H 0.120 0.880 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.142 1.298 11.239 13.379 hybrid contribution -1.198 -0.026 -0.537 1.314 sum -8.341 1.272 10.701 13.627 Atomic orbital electron populations 1.22537 0.98700 1.01569 1.00778 1.21769 0.90276 0.98683 0.91686 0.90688 1.19618 0.97770 0.95514 0.91157 1.21094 0.89576 1.33571 1.08350 0.90205 1.24998 0.94653 0.96331 0.97889 1.69914 1.06388 1.46460 1.32277 0.86892 0.80262 0.80013 0.82670 1.20805 1.21764 1.19315 1.60230 1.38766 1.21542 1.04555 1.21383 1.01739 0.85178 0.93094 1.21979 0.97479 0.95576 0.93619 1.22918 0.96094 0.96660 1.00562 1.22830 0.97140 0.99588 0.98620 1.22909 0.96338 0.97468 1.00536 1.23745 0.97868 1.03824 1.02264 1.23235 0.93220 1.01210 1.02584 0.93759 0.92546 0.92795 0.96507 0.97360 0.93200 0.84972 0.89728 0.88004 0.92361 0.91067 0.91649 0.92393 0.89390 0.89036 0.89983 0.89454 0.86870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.81 8.73 37.16 0.32 -2.49 16 2 C 0.08 1.64 1.75 -67.71 -0.12 1.52 16 3 H 0.08 1.51 4.30 -51.93 -0.22 1.28 16 4 C 0.00 -0.07 3.72 -27.88 -0.10 -0.17 16 5 C -0.49 -13.76 9.39 -34.44 -0.32 -14.08 16 6 H 0.08 2.41 6.48 -52.49 -0.34 2.07 16 7 C 0.06 1.78 5.47 -17.82 -0.10 1.68 16 8 N -0.91 -28.46 13.96 55.43 0.77 -27.69 16 9 Si 0.87 22.26 27.47 -169.99 -4.67 17.59 16 10 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 12 H -0.27 -6.62 6.54 56.52 0.37 -6.25 16 13 N -0.62 -11.37 6.07 -93.05 -0.57 -11.93 16 14 C 0.08 1.30 2.59 -131.60 -0.34 0.96 16 15 C -0.07 -0.97 3.77 -89.81 -0.34 -1.30 16 16 C -0.12 -1.89 7.65 -25.83 -0.20 -2.09 16 17 C -0.14 -1.81 8.09 -25.83 -0.21 -2.02 16 18 C -0.13 -1.72 7.45 -25.92 -0.19 -1.92 16 19 C -0.24 -3.60 9.38 -26.69 -0.25 -3.85 16 20 C -0.17 -2.91 9.28 -26.69 -0.25 -3.15 16 21 H 0.04 0.62 7.54 -51.93 -0.39 0.23 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 23 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 25 H 0.01 0.20 7.57 -51.92 -0.39 -0.20 16 26 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 27 H 0.33 5.41 6.12 -39.29 -0.24 5.17 16 28 H 0.08 1.10 8.12 -51.93 -0.42 0.68 16 29 H 0.10 1.88 8.10 -51.92 -0.42 1.46 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.09 1.19 6.03 -51.93 -0.31 0.88 16 35 H 0.09 1.41 5.76 -51.93 -0.30 1.11 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.11 2.35 5.39 -51.93 -0.28 2.07 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -30.06 291.59 -8.41 -38.47 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -6.25 Total: 6.08 kcal Atomic # 6 Polarization: -24.81 SS G_CDS: -2.10 Total: -26.91 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 0.21 Total: -39.62 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.06 -8.41 -38.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593081230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.386 kcal (2) G-P(sol) polarization free energy of solvation -30.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds