Wall clock time and date at job start Sun Mar 29 2020 21:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47040 * 240.00012 * 2 1 3 5 5 C 1.50696 * 109.47300 * 174.99808 * 4 2 1 6 6 H 1.08002 * 119.99922 * 0.02562 * 5 4 2 7 7 C 1.37874 * 120.00394 * 180.02562 * 5 4 2 8 8 N 1.31512 * 120.00088 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99874 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.46986 * 90.00165 * 9 7 5 11 11 H 1.48507 * 109.47526 * 210.00103 * 9 7 5 12 12 H 1.48497 * 109.47425 * 330.00059 * 9 7 5 13 13 N 1.46898 * 109.47106 * 120.00256 * 2 1 3 14 14 C 1.46902 * 110.99810 * 253.80261 * 13 2 1 15 15 C 1.52995 * 115.54739 * 175.26316 * 14 13 2 16 16 C 1.53775 * 113.61614 * 64.72250 * 15 14 13 17 17 C 1.53952 * 87.02542 * 220.04418 * 16 15 14 18 18 C 1.53778 * 113.61781 * 327.11568 * 15 14 13 19 19 C 1.52999 * 117.49856 * 29.59948 * 14 13 2 20 20 C 1.53002 * 117.49973 * 320.93717 * 14 13 2 21 21 H 1.09002 * 109.47419 * 294.63248 * 1 2 3 22 22 H 1.09002 * 109.47326 * 54.63446 * 1 2 3 23 23 H 1.09004 * 109.47238 * 174.62658 * 1 2 3 24 24 H 1.08994 * 109.47230 * 295.00416 * 4 2 1 25 25 H 1.09008 * 109.46845 * 55.00175 * 4 2 1 26 26 H 0.97004 * 119.99857 * 180.02562 * 8 7 5 27 27 H 1.00898 * 111.00063 * 17.75924 * 13 2 1 28 28 H 1.09004 * 112.84918 * 195.91422 * 15 14 13 29 29 H 1.09009 * 113.61628 * 334.56649 * 16 15 14 30 30 H 1.09005 * 113.61824 * 105.46702 * 16 15 14 31 31 H 1.09000 * 113.54258 * 270.81440 * 17 16 15 32 32 H 1.09003 * 113.66679 * 139.92761 * 17 16 15 33 33 H 1.09002 * 113.61254 * 254.52808 * 18 15 14 34 34 H 1.08998 * 113.61613 * 25.42636 * 18 15 14 35 35 H 1.09003 * 117.49804 * 359.97438 * 19 14 13 36 36 H 1.09000 * 117.50133 * 145.02033 * 19 14 13 37 37 H 1.09001 * 117.49433 * 214.98116 * 20 14 13 38 38 H 1.09000 * 117.49396 * 359.97438 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0790 -0.0861 -0.5393 7 6 4.2303 -1.1926 -2.3584 8 7 5.5410 -1.1002 -2.4135 9 14 3.3013 -2.1065 -3.6967 10 1 2.9406 -1.1606 -4.7831 11 1 4.1596 -3.1870 -4.2457 12 1 2.0652 -2.6986 -3.1252 13 7 2.0197 -0.6925 1.1994 14 6 2.5558 0.2636 2.1773 15 6 2.9919 -0.3360 3.5156 16 6 4.1784 -1.3070 3.3982 17 6 3.4572 -2.1872 4.4351 18 6 2.1461 -1.5428 3.9548 19 6 1.9507 1.6687 2.1964 20 6 3.3594 1.4491 1.6389 21 1 -0.3634 0.4283 0.9341 22 1 -0.3634 0.5948 -0.8380 23 1 -0.3634 -1.0232 -0.0962 24 1 1.7516 -1.7714 -1.2057 25 1 1.6053 -0.2616 -2.1370 26 1 6.0253 -1.5063 -3.1494 27 1 1.2944 -1.2613 1.6099 28 1 3.1182 0.4155 4.2950 29 1 4.2665 -1.7722 2.4163 30 1 5.1202 -0.8912 3.7566 31 1 3.7118 -1.9426 5.4663 32 1 3.5221 -3.2546 4.2238 33 1 1.4493 -1.3171 4.7621 34 1 1.6773 -2.0725 3.1255 35 1 1.1551 1.8838 1.4831 36 1 1.8637 2.1662 3.1624 37 1 4.1985 1.8020 2.2384 38 1 3.4905 1.5193 0.5591 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593081230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:58 Heat of formation + Delta-G solvation = 26.398642 kcal Electronic energy + Delta-G solvation = -16133.614214 eV Core-core repulsion = 13783.645790 eV Total energy + Delta-G solvation = -2349.968424 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88195 -38.24644 -35.67683 -34.22763 -30.88113 -29.38809 -26.82051 -26.38419 -24.63888 -23.13180 -21.72990 -20.81431 -19.74994 -18.74794 -17.33364 -16.72777 -16.15965 -15.89294 -15.12205 -14.77456 -14.54274 -14.01579 -13.88497 -13.50736 -13.43582 -13.33190 -13.08739 -12.70292 -12.42560 -12.28020 -12.04823 -11.92645 -11.73891 -11.55998 -11.34339 -11.28255 -10.96725 -10.77543 -10.65482 -10.58001 -8.77054 -8.14183 -6.11580 1.35688 1.38253 1.49269 2.43810 2.94432 3.17296 3.34155 3.74730 3.83469 3.90045 4.09805 4.17493 4.19724 4.30274 4.42714 4.48619 4.60056 4.77238 4.81557 4.92532 4.93695 5.05610 5.07714 5.14542 5.15911 5.17176 5.23633 5.25863 5.34441 5.35031 5.44976 5.57560 5.77480 5.80628 6.41730 6.54404 6.82842 6.98004 7.48592 9.02836 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.008946 C = 0.008060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.836583 B = 3129.157745 C = 3473.008688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.089 3.911 3 H 0.063 0.937 4 C -0.002 4.002 5 C -0.484 4.484 6 H 0.044 0.956 7 C -0.006 4.006 8 N -0.960 5.960 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.251 1.251 13 N -0.642 5.642 14 C 0.076 3.924 15 C -0.065 4.065 16 C -0.138 4.138 17 C -0.132 4.132 18 C -0.127 4.127 19 C -0.206 4.206 20 C -0.192 4.192 21 H 0.067 0.933 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.013 0.987 25 H 0.012 0.988 26 H 0.258 0.742 27 H 0.342 0.658 28 H 0.107 0.893 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.596 1.342 13.124 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 H 0.081 0.919 4 C -0.040 4.040 5 C -0.522 4.522 6 H 0.062 0.938 7 C -0.200 4.200 8 N -0.603 5.603 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.218 1.218 12 H -0.175 1.175 13 N -0.273 5.273 14 C -0.017 4.017 15 C -0.084 4.084 16 C -0.176 4.176 17 C -0.169 4.169 18 C -0.164 4.164 19 C -0.246 4.246 20 C -0.230 4.230 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.031 0.969 25 H 0.030 0.970 26 H 0.067 0.933 27 H 0.164 0.836 28 H 0.125 0.875 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.128 0.872 37 H 0.112 0.888 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.870 1.105 12.741 16.154 hybrid contribution -0.260 0.087 -0.962 1.001 sum -10.130 1.192 11.778 15.581 Atomic orbital electron populations 1.22398 0.95258 1.02452 1.02386 1.21540 0.92901 0.97237 0.90363 0.91934 1.19601 0.94648 0.95863 0.93902 1.21399 0.92070 1.31896 1.06878 0.93802 1.25918 0.95478 0.97780 1.00833 1.70086 1.08349 1.48358 1.33484 0.85783 0.79269 0.78673 0.79552 1.19745 1.21823 1.17509 1.60013 1.39554 1.22653 1.05068 1.21512 1.01329 0.85365 0.93460 1.22083 0.97112 0.96331 0.92870 1.22852 0.97166 0.98185 0.99374 1.22813 0.96180 0.99019 0.98883 1.22853 0.96608 0.96069 1.00874 1.23748 0.95537 1.02257 1.03027 1.23110 0.95477 1.04114 1.00313 0.91418 0.91858 0.92090 0.96890 0.96967 0.93304 0.83593 0.87529 0.92435 0.92322 0.88602 0.91767 0.89726 0.90455 0.89002 0.87163 0.88842 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.81 8.73 71.98 0.63 -4.18 16 2 C 0.09 3.39 1.75 44.92 0.08 3.47 16 3 H 0.06 2.54 4.30 -2.39 -0.01 2.53 16 4 C 0.00 -0.10 3.72 29.85 0.11 0.01 16 5 C -0.48 -28.29 9.39 25.60 0.24 -28.05 16 6 H 0.04 2.82 6.48 -2.91 -0.02 2.81 16 7 C -0.01 -0.35 5.47 84.65 0.46 0.11 16 8 N -0.96 -62.50 13.96 21.45 0.30 -62.20 16 9 Si 0.94 46.43 27.47 68.60 1.88 48.32 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 12 H -0.25 -11.58 6.54 99.48 0.65 -10.93 16 13 N -0.64 -23.22 6.07 -448.29 -2.72 -25.94 16 14 C 0.08 2.44 2.59 3.53 0.01 2.45 16 15 C -0.07 -1.74 3.77 -10.27 -0.04 -1.78 16 16 C -0.14 -4.19 7.65 31.18 0.24 -3.95 16 17 C -0.13 -3.02 8.09 31.18 0.25 -2.77 16 18 C -0.13 -2.87 7.45 31.12 0.23 -2.63 16 19 C -0.21 -5.84 9.38 30.62 0.29 -5.55 16 20 C -0.19 -6.94 9.28 30.62 0.28 -6.66 16 21 H 0.07 1.65 7.54 -2.39 -0.02 1.63 16 22 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 24 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 25 H 0.01 0.57 7.57 -2.38 -0.02 0.55 16 26 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 27 H 0.34 10.68 6.12 -89.70 -0.55 10.13 16 28 H 0.11 2.41 8.12 -2.39 -0.02 2.39 16 29 H 0.06 2.25 8.10 -2.38 -0.02 2.23 16 30 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.92 6.03 -2.39 -0.01 1.91 16 35 H 0.09 2.61 5.76 -2.39 -0.01 2.60 16 36 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.09 3.14 8.14 -2.39 -0.02 3.13 16 38 H 0.07 3.18 5.39 -2.39 -0.01 3.17 16 Total: -1.00 -67.68 291.59 2.67 -65.01 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 0.43 Total: 24.35 kcal Atomic # 6 Polarization: -52.32 SS G_CDS: 2.79 Total: -49.54 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -2.42 Total: -88.14 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.88 Total: 48.32 kcal Total: -67.68 2.67 -65.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593081230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.404 kcal (2) G-P(sol) polarization free energy of solvation -67.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds