Wall clock time and date at job start Sun Mar 29 2020 21:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08994 * 109.47172 * 2 1 4 4 C 1.53004 * 109.47430 * 120.00041 * 2 1 3 5 5 C 1.50696 * 109.47276 * 185.00050 * 4 2 1 6 6 H 1.08005 * 120.00348 * 359.97438 * 5 4 2 7 7 C 1.37875 * 120.00130 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00055 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00214 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47143 * 90.00179 * 9 7 5 11 11 H 1.48502 * 109.47207 * 210.00215 * 9 7 5 12 12 H 1.48501 * 109.47181 * 330.00092 * 9 7 5 13 13 N 1.46905 * 109.47464 * 239.99775 * 2 1 3 14 14 C 1.47697 * 111.00195 * 156.97901 * 13 2 1 15 15 C 1.52948 * 86.96595 * 219.84715 * 14 13 2 16 16 H 1.09006 * 111.46995 * 276.23882 * 15 14 13 17 17 C 1.51520 * 115.11993 * 145.81824 * 15 14 13 18 18 C 1.51624 * 114.93105 * 293.38080 * 17 15 14 19 19 C 1.52616 * 111.02016 * 313.71346 * 18 17 15 20 20 C 1.52985 * 108.77064 * 63.92088 * 19 18 17 21 21 C 1.48153 * 110.99627 * 61.53936 * 13 2 1 22 22 H 1.09002 * 113.85602 * 255.05178 * 21 13 2 23 23 H 1.08996 * 109.46991 * 67.20914 * 1 2 3 24 24 H 1.08997 * 109.47208 * 307.19921 * 1 2 3 25 25 H 1.09008 * 109.47035 * 187.20692 * 1 2 3 26 26 H 1.09004 * 109.46502 * 305.00235 * 4 2 1 27 27 H 1.09002 * 109.47327 * 64.99580 * 4 2 1 28 28 H 0.97000 * 120.00728 * 179.97438 * 8 7 5 29 29 H 1.08995 * 113.63147 * 334.36808 * 14 13 2 30 30 H 1.09005 * 113.62845 * 105.33161 * 14 13 2 31 31 H 1.09000 * 107.88110 * 172.22030 * 17 15 14 32 32 H 1.08996 * 108.46293 * 54.97892 * 17 15 14 33 33 H 1.09010 * 109.16926 * 193.31688 * 18 17 15 34 34 H 1.09001 * 109.16987 * 74.10879 * 18 17 15 35 35 H 1.09002 * 109.58996 * 304.13448 * 19 18 17 36 36 H 1.08999 * 109.71109 * 183.78462 * 19 18 17 37 37 H 1.08996 * 109.51124 * 176.41885 * 20 19 18 38 38 H 1.09010 * 109.54957 * 56.29670 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0791 -0.0861 0.5391 7 6 4.2304 -1.1926 2.3583 8 7 3.5765 -1.8369 3.3000 9 14 6.0920 -1.0601 2.4373 10 1 6.4697 0.1626 3.1906 11 1 6.6445 -2.2552 3.1242 12 1 6.6416 -0.9826 1.0600 13 7 2.0197 -0.6925 -1.1994 14 6 3.3926 -0.2636 -1.5348 15 6 2.9569 -0.2938 -3.0006 16 1 3.0279 -1.2985 -3.4173 17 6 3.5946 0.7600 -3.8831 18 6 3.1980 2.1878 -3.5622 19 6 1.6882 2.3074 -3.3739 20 6 1.2765 1.4759 -2.1575 21 6 1.5752 0.0004 -2.4312 22 1 0.7661 -0.5081 -2.9555 23 1 -0.3633 0.3981 -0.9474 24 1 -0.3633 0.6213 0.8185 25 1 -0.3633 -1.0196 0.1289 26 1 1.6053 -0.2617 2.1370 27 1 1.7517 -1.7715 1.2057 28 1 4.0608 -2.2437 4.0354 29 1 3.6393 0.7345 -1.1728 30 1 4.1539 -1.0043 -1.2900 31 1 3.3144 0.5469 -4.9147 32 1 4.6776 0.6740 -3.7957 33 1 3.5093 2.8381 -4.3798 34 1 3.6988 2.5012 -2.6462 35 1 1.1784 1.9333 -4.2617 36 1 1.4196 3.3511 -3.2110 37 1 0.2097 1.6034 -1.9736 38 1 1.8385 1.8052 -1.2834 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595566286.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:48 Heat of formation + Delta-G solvation = 27.519496 kcal Electronic energy + Delta-G solvation = -16464.349678 eV Core-core repulsion = 14114.429858 eV Total energy + Delta-G solvation = -2349.919820 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.99624 -35.49056 -33.37242 -32.26582 -30.43958 -27.68794 -26.67880 -24.45911 -23.14817 -22.71688 -21.08959 -18.91944 -17.43576 -16.17690 -15.88195 -15.42024 -14.75464 -14.43831 -13.79716 -13.49707 -13.11162 -12.84252 -12.34057 -12.08267 -11.64366 -11.54729 -11.45334 -11.29739 -10.98873 -10.89556 -10.71313 -10.58192 -10.39968 -10.38280 -10.07147 -9.66254 -9.40075 -8.99411 -8.79736 -8.28525 -7.87294 -5.92236 -3.92266 3.34177 3.40931 3.43140 4.50960 4.58441 4.77573 4.89866 5.15156 5.26193 5.36911 5.45115 5.52643 5.58293 5.71016 5.81152 5.85737 5.91266 6.01241 6.05911 6.15414 6.16665 6.22191 6.31122 6.32331 6.45043 6.50428 6.56735 6.71938 6.74174 6.88012 6.97756 7.33545 7.65007 7.75377 8.07687 8.15357 8.50559 9.12254 9.69768 11.19629 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.030434 B = 0.009265 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.788701 B = 3021.480963 C = 3595.813612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.046 3.954 3 H 0.044 0.956 4 C 0.033 3.967 5 C -0.513 4.513 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.885 3.115 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.449 5.449 14 C 0.026 3.974 15 C -0.119 4.119 16 H 0.092 0.908 17 C -0.102 4.102 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.140 4.140 21 C 0.028 3.972 22 H 0.080 0.920 23 H 0.048 0.952 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.016 0.984 27 H 0.023 0.977 28 H 0.258 0.742 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.068 0.932 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 6.893 -13.141 15.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.062 4.062 3 H 0.062 0.938 4 C -0.004 4.004 5 C -0.552 4.552 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.714 3.286 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.171 5.171 14 C -0.103 4.103 15 C -0.137 4.137 16 H 0.110 0.890 17 C -0.140 4.140 18 C -0.154 4.154 19 C -0.152 4.152 20 C -0.178 4.178 21 C -0.081 4.081 22 H 0.098 0.902 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.034 0.966 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.963 6.056 -12.794 14.462 hybrid contribution 1.189 0.811 0.264 1.464 sum -1.773 6.867 -12.530 14.398 Atomic orbital electron populations 1.22034 0.96540 1.01675 1.00339 1.22422 0.93384 0.96632 0.93804 0.93844 1.19085 0.95651 0.95936 0.89746 1.21404 0.92282 1.33743 1.07724 0.92078 1.24990 0.97921 0.95620 0.95924 1.69966 1.35257 1.36321 1.12148 0.86699 0.86438 0.77403 0.78090 1.20907 1.21347 1.19888 1.69410 1.03976 1.43644 1.00076 1.23678 0.94317 1.00224 0.92074 1.22205 0.96294 0.98996 0.96252 0.88995 1.20679 1.00274 0.94031 0.99052 1.21146 0.96294 0.96522 1.01430 1.21366 0.96014 0.99316 0.98456 1.22168 1.01700 0.95095 0.98828 1.23100 0.96992 0.93090 0.94926 0.90227 0.93312 0.93137 0.92689 0.96568 0.95829 0.93209 0.91734 0.89849 0.92852 0.92050 0.92375 0.92167 0.92234 0.92384 0.91340 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.95 37.15 0.33 -2.35 16 2 C 0.05 0.97 1.64 -67.71 -0.11 0.86 16 3 H 0.04 0.92 5.14 -51.93 -0.27 0.65 16 4 C 0.03 0.87 4.65 -27.88 -0.13 0.74 16 5 C -0.51 -14.35 8.22 -34.44 -0.28 -14.64 16 6 H 0.06 1.63 4.84 -52.48 -0.25 1.37 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 9 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.45 -8.94 6.13 -233.66 -1.43 -10.38 16 14 C 0.03 0.49 4.51 -8.08 -0.04 0.46 16 15 C -0.12 -1.80 4.19 -91.77 -0.38 -2.18 16 16 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 17 C -0.10 -1.28 5.51 -28.18 -0.16 -1.44 16 18 C -0.12 -1.39 5.64 -27.62 -0.16 -1.54 16 19 C -0.11 -1.34 5.90 -26.94 -0.16 -1.50 16 20 C -0.14 -1.99 3.90 -26.73 -0.10 -2.09 16 21 C 0.03 0.45 3.66 -72.03 -0.26 0.19 16 22 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 23 H 0.05 0.77 4.90 -51.93 -0.25 0.51 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.05 1.03 8.14 -51.92 -0.42 0.61 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.06 1.25 5.81 -51.93 -0.30 0.95 16 30 H 0.08 1.75 7.70 -51.93 -0.40 1.35 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.06 0.78 7.80 -51.93 -0.41 0.37 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.93 6.28 -51.93 -0.33 0.60 16 38 H 0.08 1.30 4.66 -51.92 -0.24 1.06 16 LS Contribution 277.47 15.07 4.18 4.18 Total: -1.00 -29.82 277.47 -9.32 -39.14 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.23 Total: -1.14 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: -1.55 Total: -21.99 kcal Atomic # 7 Polarization: -36.36 SS G_CDS: -0.70 Total: -37.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.82 -9.32 -39.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595566286.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.657 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds