Wall clock time and date at job start Sun Mar 29 2020 21:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46972 * 2 1 4 4 C 1.53000 * 109.47212 * 240.00117 * 2 1 3 5 5 C 1.50706 * 109.47188 * 175.00043 * 4 2 1 6 6 H 1.08002 * 119.99386 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99767 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99637 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00240 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47176 * 89.99933 * 9 7 5 11 11 H 1.48508 * 109.47202 * 209.99872 * 9 7 5 12 12 H 1.48501 * 109.47290 * 329.99706 * 9 7 5 13 13 N 1.46896 * 109.47230 * 119.99696 * 2 1 3 14 14 C 1.48142 * 110.99928 * 317.96376 * 13 2 1 15 15 C 1.53329 * 85.32700 * 221.37710 * 14 13 2 16 16 H 1.09005 * 111.42295 * 273.90587 * 15 14 13 17 17 C 1.50411 * 115.80448 * 145.40729 * 15 14 13 18 18 C 1.51623 * 114.50938 * 289.83490 * 17 15 14 19 19 C 1.52632 * 110.99574 * 313.29037 * 18 17 15 20 20 C 1.52976 * 108.87267 * 63.90373 * 19 18 17 21 21 C 1.47206 * 110.49430 * 219.51838 * 13 2 1 22 22 H 1.09008 * 114.08302 * 254.09887 * 21 13 2 23 23 H 1.08999 * 109.47531 * 306.47207 * 1 2 3 24 24 H 1.09006 * 109.47382 * 66.47403 * 1 2 3 25 25 H 1.09001 * 109.47444 * 186.47112 * 1 2 3 26 26 H 1.08995 * 109.46799 * 294.99596 * 4 2 1 27 27 H 1.08995 * 109.47419 * 54.99623 * 4 2 1 28 28 H 0.96999 * 120.00304 * 179.97438 * 8 7 5 29 29 H 1.09002 * 113.89785 * 107.28253 * 14 13 2 30 30 H 1.08999 * 114.01616 * 335.48601 * 14 13 2 31 31 H 1.09002 * 108.47614 * 168.52976 * 17 15 14 32 32 H 1.08999 * 108.47786 * 51.13044 * 17 15 14 33 33 H 1.09000 * 109.17671 * 192.90622 * 18 17 15 34 34 H 1.08992 * 109.17635 * 73.68052 * 18 17 15 35 35 H 1.08997 * 109.58785 * 183.75974 * 19 18 17 36 36 H 1.08996 * 109.59112 * 304.05297 * 19 18 17 37 37 H 1.09008 * 109.50359 * 56.25062 * 20 19 18 38 38 H 1.08998 * 109.50885 * 176.37784 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0788 -0.0854 -0.5395 7 6 4.2304 -1.1935 -2.3578 8 7 5.5411 -1.1002 -2.4134 9 14 3.3016 -2.1098 -3.6946 10 1 2.9399 -1.1655 -4.7822 11 1 4.1606 -3.1903 -4.2424 12 1 2.0661 -2.7020 -3.1219 13 7 2.0196 -0.6924 1.1994 14 6 1.2281 -0.3118 2.3925 15 6 2.5772 -0.2735 3.1201 16 1 2.8562 -1.2587 3.4937 17 6 2.7144 0.7747 4.1901 18 6 2.7860 2.1976 3.6713 19 6 3.7678 2.3067 2.5077 20 6 3.2489 1.4631 1.3418 21 6 3.1943 0.0018 1.7518 22 1 4.1392 -0.5116 1.5732 23 1 -0.3634 0.6109 0.8264 24 1 -0.3634 0.4102 -0.9423 25 1 -0.3634 -1.0211 0.1158 26 1 1.7517 -1.7714 -1.2055 27 1 1.6053 -0.2618 -2.1370 28 1 6.0256 -1.5076 -3.1484 29 1 0.5579 -1.0953 2.7461 30 1 0.7427 0.6607 2.3110 31 1 3.6200 0.5691 4.7610 32 1 1.8607 0.6951 4.8632 33 1 3.1109 2.8564 4.4766 34 1 1.7964 2.5062 3.3347 35 1 3.8515 3.3479 2.1967 36 1 4.7454 1.9383 2.8186 37 1 2.2425 1.7878 1.0772 38 1 3.9088 1.5845 0.4828 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595566288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:50 Heat of formation + Delta-G solvation = 33.007585 kcal Electronic energy + Delta-G solvation = -16507.719546 eV Core-core repulsion = 14158.037707 eV Total energy + Delta-G solvation = -2349.681839 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.97678 -35.53955 -33.44434 -31.93268 -30.77638 -28.19299 -26.47283 -25.20631 -22.81187 -22.36655 -21.00654 -18.83735 -17.26577 -16.67823 -15.81693 -15.61011 -14.70651 -14.42654 -13.68082 -13.40334 -13.27512 -12.66769 -12.46828 -12.19334 -11.95497 -11.67946 -11.61737 -11.30605 -11.03273 -10.99705 -10.73052 -10.44420 -10.32553 -10.19404 -9.65371 -9.51047 -9.49537 -9.26802 -8.92365 -8.40933 -7.76191 -5.91820 -3.86344 3.37676 3.45484 3.51321 4.54608 4.57329 4.75925 4.94913 5.23209 5.28905 5.42558 5.46315 5.49443 5.67120 5.72182 5.77840 5.82986 5.89786 5.95593 6.03340 6.10196 6.18083 6.23025 6.30294 6.35751 6.44252 6.45551 6.61444 6.62321 6.76856 6.87812 6.95592 7.22045 7.30373 7.50118 7.91253 8.01514 8.69043 9.14865 9.72344 11.21402 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035115 B = 0.009009 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.180033 B = 3107.313342 C = 3510.808579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.032 3.968 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.504 4.504 6 H 0.081 0.919 7 C 0.063 3.937 8 N -0.909 5.909 9 Si 0.875 3.125 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.267 1.267 13 N -0.448 5.448 14 C -0.004 4.004 15 C -0.113 4.113 16 H 0.087 0.913 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.114 4.114 20 C -0.136 4.136 21 C 0.057 3.943 22 H 0.096 0.904 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.020 0.980 27 H 0.008 0.992 28 H 0.260 0.740 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.414 5.389 11.171 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.076 4.076 3 H 0.090 0.910 4 C -0.038 4.038 5 C -0.542 4.542 6 H 0.099 0.901 7 C -0.136 4.136 8 N -0.549 5.549 9 Si 0.703 3.297 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.191 1.191 13 N -0.170 5.170 14 C -0.133 4.133 15 C -0.132 4.132 16 H 0.105 0.895 17 C -0.142 4.142 18 C -0.152 4.152 19 C -0.152 4.152 20 C -0.174 4.174 21 C -0.052 4.052 22 H 0.114 0.886 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -7.244 4.615 10.822 13.816 hybrid contribution -0.490 0.215 -0.777 0.944 sum -7.734 4.830 10.044 13.566 Atomic orbital electron populations 1.22048 0.96993 1.01391 1.00586 1.22554 0.92635 0.98865 0.93510 0.90997 1.19544 0.97338 0.95818 0.91106 1.21245 0.89864 1.34055 1.09042 0.90117 1.24993 0.94666 0.96079 0.97905 1.69909 1.06429 1.46172 1.32385 0.86852 0.80370 0.80005 0.82463 1.20699 1.21678 1.19129 1.68920 1.02798 1.45298 0.99989 1.23919 0.96021 0.99523 0.93882 1.22116 0.97104 0.99311 0.94698 0.89485 1.20546 1.01444 0.94407 0.97802 1.21151 0.99620 0.96401 0.98040 1.21373 0.98958 0.99477 0.95436 1.21864 1.02094 0.94822 0.98599 1.22534 0.97438 0.93351 0.91900 0.88626 0.93784 0.92754 0.92688 0.96134 0.97334 0.93076 0.90723 0.91970 0.92515 0.92446 0.92480 0.92686 0.92298 0.91894 0.91084 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.50 37.15 0.32 -2.26 16 2 C 0.03 0.65 1.89 -67.72 -0.13 0.53 16 3 H 0.07 1.45 4.17 -51.92 -0.22 1.24 16 4 C 0.00 -0.01 3.72 -27.88 -0.10 -0.11 16 5 C -0.50 -14.20 9.25 -34.44 -0.32 -14.52 16 6 H 0.08 2.35 4.61 -52.49 -0.24 2.10 16 7 C 0.06 1.86 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -28.23 13.96 55.43 0.77 -27.45 16 9 Si 0.87 22.42 27.47 -169.99 -4.67 17.75 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 13 N -0.45 -8.76 5.94 -233.38 -1.39 -10.14 16 14 C 0.00 -0.07 5.95 -3.18 -0.02 -0.09 16 15 C -0.11 -1.70 3.89 -92.15 -0.36 -2.05 16 16 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.10 -1.27 5.50 -28.72 -0.16 -1.43 16 18 C -0.11 -1.37 5.79 -27.62 -0.16 -1.53 16 19 C -0.11 -1.58 5.91 -26.93 -0.16 -1.74 16 20 C -0.14 -2.32 3.87 -27.32 -0.11 -2.42 16 21 C 0.06 1.05 3.15 -68.54 -0.22 0.83 16 22 H 0.10 2.04 7.76 -51.92 -0.40 1.64 16 23 H 0.04 0.64 6.41 -51.93 -0.33 0.31 16 24 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.02 0.53 7.20 -51.93 -0.37 0.16 16 27 H 0.01 0.21 7.57 -51.93 -0.39 -0.19 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.91 6.08 -51.93 -0.32 0.60 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.65 7.99 -51.93 -0.41 0.24 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.20 5.09 -51.92 -0.26 0.93 16 38 H 0.08 1.68 6.89 -51.93 -0.36 1.32 16 LS Contribution 276.34 15.07 4.16 4.16 Total: -1.00 -30.22 276.34 -8.91 -39.13 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -6.28 Total: -0.42 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -1.51 Total: -23.03 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: -0.61 Total: -37.59 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -4.67 Total: 17.75 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.22 -8.91 -39.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595566288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.133 kcal (2) G-P(sol) polarization free energy of solvation -30.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds