Wall clock time and date at job start Sun Mar 29 2020 21:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09010 * 109.46972 * 2 1 4 4 C 1.53000 * 109.47212 * 240.00117 * 2 1 3 5 5 C 1.50706 * 109.47188 * 175.00043 * 4 2 1 6 6 H 1.08002 * 119.99386 * 359.97438 * 5 4 2 7 7 C 1.37874 * 119.99767 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99637 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00240 * 359.97438 * 7 5 4 10 10 H 1.48505 * 109.47176 * 89.99933 * 9 7 5 11 11 H 1.48508 * 109.47202 * 209.99872 * 9 7 5 12 12 H 1.48501 * 109.47290 * 329.99706 * 9 7 5 13 13 N 1.46896 * 109.47230 * 119.99696 * 2 1 3 14 14 C 1.48142 * 110.99928 * 317.96376 * 13 2 1 15 15 C 1.53329 * 85.32700 * 221.37710 * 14 13 2 16 16 H 1.09005 * 111.42295 * 273.90587 * 15 14 13 17 17 C 1.50411 * 115.80448 * 145.40729 * 15 14 13 18 18 C 1.51623 * 114.50938 * 289.83490 * 17 15 14 19 19 C 1.52632 * 110.99574 * 313.29037 * 18 17 15 20 20 C 1.52976 * 108.87267 * 63.90373 * 19 18 17 21 21 C 1.47206 * 110.49430 * 219.51838 * 13 2 1 22 22 H 1.09008 * 114.08302 * 254.09887 * 21 13 2 23 23 H 1.08999 * 109.47531 * 306.47207 * 1 2 3 24 24 H 1.09006 * 109.47382 * 66.47403 * 1 2 3 25 25 H 1.09001 * 109.47444 * 186.47112 * 1 2 3 26 26 H 1.08995 * 109.46799 * 294.99596 * 4 2 1 27 27 H 1.08995 * 109.47419 * 54.99623 * 4 2 1 28 28 H 0.96999 * 120.00304 * 179.97438 * 8 7 5 29 29 H 1.09002 * 113.89785 * 107.28253 * 14 13 2 30 30 H 1.08999 * 114.01616 * 335.48601 * 14 13 2 31 31 H 1.09002 * 108.47614 * 168.52976 * 17 15 14 32 32 H 1.08999 * 108.47786 * 51.13044 * 17 15 14 33 33 H 1.09000 * 109.17671 * 192.90622 * 18 17 15 34 34 H 1.08992 * 109.17635 * 73.68052 * 18 17 15 35 35 H 1.08997 * 109.58785 * 183.75974 * 19 18 17 36 36 H 1.08996 * 109.59112 * 304.05297 * 19 18 17 37 37 H 1.09008 * 109.50359 * 56.25062 * 20 19 18 38 38 H 1.08998 * 109.50885 * 176.37784 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3127 6 1 4.0788 -0.0854 -0.5395 7 6 4.2304 -1.1935 -2.3578 8 7 5.5411 -1.1002 -2.4134 9 14 3.3016 -2.1098 -3.6946 10 1 2.9399 -1.1655 -4.7822 11 1 4.1606 -3.1903 -4.2424 12 1 2.0661 -2.7020 -3.1219 13 7 2.0196 -0.6924 1.1994 14 6 1.2281 -0.3118 2.3925 15 6 2.5772 -0.2735 3.1201 16 1 2.8562 -1.2587 3.4937 17 6 2.7144 0.7747 4.1901 18 6 2.7860 2.1976 3.6713 19 6 3.7678 2.3067 2.5077 20 6 3.2489 1.4631 1.3418 21 6 3.1943 0.0018 1.7518 22 1 4.1392 -0.5116 1.5732 23 1 -0.3634 0.6109 0.8264 24 1 -0.3634 0.4102 -0.9423 25 1 -0.3634 -1.0211 0.1158 26 1 1.7517 -1.7714 -1.2055 27 1 1.6053 -0.2618 -2.1370 28 1 6.0256 -1.5076 -3.1484 29 1 0.5579 -1.0953 2.7461 30 1 0.7427 0.6607 2.3110 31 1 3.6200 0.5691 4.7610 32 1 1.8607 0.6951 4.8632 33 1 3.1109 2.8564 4.4766 34 1 1.7964 2.5062 3.3347 35 1 3.8515 3.3479 2.1967 36 1 4.7454 1.9383 2.8186 37 1 2.2425 1.7878 1.0772 38 1 3.9088 1.5845 0.4828 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595566288.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:49 Heat of formation + Delta-G solvation = 12.736488 kcal Electronic energy + Delta-G solvation = -16508.598566 eV Core-core repulsion = 14158.037707 eV Total energy + Delta-G solvation = -2350.560860 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.33749 -36.89641 -35.14553 -33.82417 -32.03942 -30.05483 -27.77450 -26.57476 -24.43514 -23.95004 -22.25470 -20.33326 -18.96334 -18.46289 -17.21514 -16.99143 -16.39645 -15.88526 -15.20219 -14.81544 -14.52667 -14.38302 -14.02038 -13.66182 -13.56074 -13.26516 -13.09222 -12.79051 -12.48595 -12.36135 -12.14907 -12.00639 -11.84863 -11.54072 -11.40521 -11.16339 -10.92384 -10.80808 -10.74137 -10.57791 -9.24545 -8.20043 -6.18661 1.32107 1.35216 1.46821 2.39988 3.10922 3.24839 3.54993 3.76155 4.09115 4.13600 4.22627 4.25469 4.35163 4.37025 4.45635 4.53216 4.67558 4.76555 4.87023 4.88636 4.98506 5.05012 5.08468 5.14581 5.17877 5.22155 5.27724 5.33917 5.35652 5.42773 5.46646 5.57433 5.62608 5.72893 5.89962 6.39213 6.54232 6.89481 7.43088 8.95869 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.035115 B = 0.009009 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.180033 B = 3107.313342 C = 3510.808579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.033 3.967 3 H 0.069 0.931 4 C 0.001 3.999 5 C -0.503 4.503 6 H 0.057 0.943 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.289 1.289 12 H -0.257 1.257 13 N -0.483 5.483 14 C 0.008 3.992 15 C -0.098 4.098 16 H 0.081 0.919 17 C -0.102 4.102 18 C -0.109 4.109 19 C -0.112 4.112 20 C -0.126 4.126 21 C 0.049 3.951 22 H 0.045 0.955 23 H 0.073 0.927 24 H 0.061 0.939 25 H 0.053 0.947 26 H 0.007 0.993 27 H 0.012 0.988 28 H 0.260 0.740 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.078 0.922 38 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 6.123 12.642 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.075 4.075 3 H 0.086 0.914 4 C -0.037 4.037 5 C -0.542 4.542 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.765 3.235 10 H -0.194 1.194 11 H -0.215 1.215 12 H -0.181 1.181 13 N -0.205 5.205 14 C -0.121 4.121 15 C -0.117 4.117 16 H 0.099 0.901 17 C -0.140 4.140 18 C -0.147 4.147 19 C -0.150 4.150 20 C -0.164 4.164 21 C -0.061 4.061 22 H 0.063 0.937 23 H 0.092 0.908 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.025 0.975 27 H 0.031 0.969 28 H 0.069 0.931 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -9.911 5.355 12.305 16.683 hybrid contribution 0.410 -0.013 -1.204 1.272 sum -9.501 5.342 11.101 15.557 Atomic orbital electron populations 1.21966 0.93859 1.02038 1.02302 1.22448 0.95083 0.97893 0.92078 0.91367 1.19517 0.94719 0.95605 0.93879 1.21626 0.92098 1.32534 1.07902 0.92531 1.25888 0.95488 0.97488 1.00725 1.70063 1.08199 1.47972 1.33545 0.85808 0.79212 0.78831 0.79645 1.19407 1.21538 1.18071 1.68806 1.04172 1.46275 1.01263 1.23962 0.96042 1.00771 0.91288 1.22013 0.95905 1.00181 0.93608 0.90074 1.20554 1.02976 0.93532 0.96928 1.21140 0.99256 0.96658 0.97597 1.21375 0.99218 0.99280 0.95092 1.21680 1.01457 0.94786 0.98442 1.22468 0.95332 0.93412 0.94863 0.93707 0.90837 0.92025 0.92827 0.97500 0.96949 0.93110 0.89268 0.90210 0.91937 0.89778 0.89920 0.91823 0.91047 0.92709 0.90357 0.94267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.45 8.50 71.98 0.61 -3.84 16 2 C 0.03 1.32 1.89 44.91 0.08 1.41 16 3 H 0.07 2.75 4.17 -2.38 -0.01 2.74 16 4 C 0.00 0.03 3.72 29.85 0.11 0.14 16 5 C -0.50 -29.49 9.25 25.60 0.24 -29.25 16 6 H 0.06 3.52 4.61 -2.91 -0.01 3.51 16 7 C 0.00 -0.05 5.47 84.65 0.46 0.41 16 8 N -0.96 -61.80 13.96 21.45 0.30 -61.50 16 9 Si 0.94 46.98 27.47 68.60 1.88 48.86 16 10 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 11 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 12 H -0.26 -12.29 6.54 99.48 0.65 -11.64 16 13 N -0.48 -18.74 5.94 -892.28 -5.30 -24.03 16 14 C 0.01 0.21 5.95 86.04 0.51 0.73 16 15 C -0.10 -2.78 3.89 -11.58 -0.05 -2.83 16 16 H 0.08 2.38 8.14 -2.38 -0.02 2.36 16 17 C -0.10 -2.15 5.50 29.31 0.16 -1.99 16 18 C -0.11 -2.21 5.79 30.02 0.17 -2.04 16 19 C -0.11 -2.96 5.91 30.46 0.18 -2.78 16 20 C -0.13 -4.38 3.87 30.21 0.12 -4.26 16 21 C 0.05 1.85 3.15 44.21 0.14 1.99 16 22 H 0.04 2.09 7.76 -2.38 -0.02 2.08 16 23 H 0.07 1.84 6.41 -2.39 -0.02 1.82 16 24 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 25 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.01 0.35 7.20 -2.39 -0.02 0.33 16 27 H 0.01 0.59 7.57 -2.39 -0.02 0.58 16 28 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 29 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.08 1.99 6.08 -2.39 -0.01 1.97 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.06 1.22 7.99 -2.39 -0.02 1.20 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.59 5.09 -2.38 -0.01 2.57 16 38 H 0.04 1.68 6.89 -2.39 -0.02 1.66 16 Total: -1.00 -68.15 276.34 0.60 -67.56 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.96 Total: 11.42 kcal Atomic # 6 Polarization: -45.06 SS G_CDS: 2.75 Total: -42.31 kcal Atomic # 7 Polarization: -80.53 SS G_CDS: -5.00 Total: -85.53 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.88 Total: 48.86 kcal Total: -68.15 0.60 -67.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595566288.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.293 kcal (2) G-P(sol) polarization free energy of solvation -68.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds