Wall clock time and date at job start Sun Mar 29 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.55910 * 2 1 4 4 C 1.53065 * 117.51464 * 214.29799 * 2 1 3 5 5 C 1.52996 * 59.98596 * 252.52217 * 4 2 1 6 6 H 1.09009 * 117.50049 * 252.50386 * 5 4 2 7 7 C 1.52994 * 117.50185 * 107.49940 * 5 4 2 8 8 N 1.46903 * 109.47162 * 116.25489 * 7 5 4 9 9 C 1.46848 * 110.99773 * 314.21191 * 8 7 5 10 10 C 1.53041 * 109.51824 * 174.16048 * 9 8 7 11 11 C 1.53120 * 109.31192 * 59.16077 * 10 9 8 12 12 C 1.53117 * 109.15979 * 302.40409 * 11 10 9 13 13 H 1.09003 * 109.50058 * 297.63675 * 12 11 10 14 14 C 1.50694 * 109.50559 * 177.55528 * 12 11 10 15 15 H 1.08000 * 120.00563 * 240.07626 * 14 12 11 16 16 C 1.37885 * 119.99902 * 60.07790 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.46844 * 110.99988 * 190.00405 * 8 7 5 23 23 H 1.08997 * 109.47224 * 274.31289 * 1 2 3 24 24 H 1.09002 * 109.47339 * 34.31092 * 1 2 3 25 25 H 1.08999 * 109.47166 * 154.31267 * 1 2 3 26 26 H 1.09007 * 117.49714 * 145.03717 * 4 2 1 27 27 H 1.08998 * 117.53421 * 359.97438 * 4 2 1 28 28 H 1.08999 * 109.46999 * 356.25707 * 7 5 4 29 29 H 1.08994 * 109.47578 * 236.25668 * 7 5 4 30 30 H 1.08997 * 109.46229 * 294.17391 * 9 8 7 31 31 H 1.08997 * 109.46146 * 54.15751 * 9 8 7 32 32 H 1.09002 * 109.49792 * 179.12111 * 10 9 8 33 33 H 1.08998 * 109.50248 * 299.23656 * 10 9 8 34 34 H 1.08998 * 109.55773 * 182.47426 * 11 10 9 35 35 H 1.09000 * 109.49315 * 62.28675 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46629 * 65.82095 * 22 8 7 38 38 H 1.09006 * 109.45466 * 305.84704 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1215 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1714 -0.8749 1.2687 7 6 1.3589 -2.1561 1.4715 8 7 2.2083 -3.0743 2.2417 9 6 3.3586 -3.5202 1.4452 10 6 4.2948 -4.3551 2.3218 11 6 3.5311 -5.5635 2.8707 12 6 2.3106 -5.0729 3.6544 13 1 2.6402 -4.4758 4.5047 14 6 1.5200 -6.2572 4.1475 15 1 0.4927 -6.3866 3.8402 16 6 2.1080 -7.1759 4.9910 17 7 3.3591 -7.0187 5.3648 18 14 1.1277 -8.6435 5.6027 19 1 0.4436 -8.2877 6.8718 20 1 0.1156 -9.0221 4.5841 21 1 2.0446 -9.7876 5.8385 22 6 1.4319 -4.2172 2.7392 23 1 -0.3633 0.0773 1.0247 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1724 -0.8756 -1.2679 27 1 1.6127 -1.8598 -1.2680 28 1 0.7936 -2.7201 0.7296 29 1 0.6687 -1.6483 2.1451 30 1 3.0085 -4.1252 0.6088 31 1 3.8959 -2.6513 1.0651 32 1 5.1406 -4.6990 1.7263 33 1 4.6562 -3.7466 3.1508 34 1 4.1816 -6.1371 3.5309 35 1 3.2037 -6.1932 2.0434 36 1 3.7726 -7.6648 5.9585 37 1 1.0909 -4.8189 1.8968 38 1 0.5698 -3.8543 3.2989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:15 Heat of formation + Delta-G solvation = 9.358485 kcal Electronic energy + Delta-G solvation = -15758.498684 eV Core-core repulsion = 13407.791343 eV Total energy + Delta-G solvation = -2350.707341 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.92142 -37.09503 -33.48310 -31.54638 -29.88260 -28.49450 -26.26561 -24.90190 -22.16107 -21.61436 -21.20744 -18.93052 -18.52462 -16.55202 -15.93156 -14.69652 -14.44813 -14.17229 -13.94667 -13.30698 -13.09687 -12.97247 -12.39699 -12.36646 -12.12233 -11.89702 -11.50273 -11.39884 -10.98594 -10.91989 -10.64936 -10.59580 -10.08976 -9.87138 -9.80493 -9.59384 -9.40695 -8.96338 -8.65291 -8.26193 -7.56716 -5.93956 -4.00008 3.33019 3.39551 3.42584 3.78817 4.40355 4.55689 4.74155 4.91724 5.04415 5.27898 5.36056 5.55146 5.67286 5.74151 5.79515 5.81547 5.88462 5.91729 5.98178 6.11877 6.17535 6.25781 6.34773 6.38891 6.47872 6.57897 6.79393 6.81108 7.02936 7.27680 7.46037 7.74961 7.79827 7.90581 8.13439 8.22113 8.52597 9.04138 9.64024 11.12053 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049034 B = 0.006112 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.891573 B = 4580.202480 C = 4974.784255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.155 4.155 3 H 0.100 0.900 4 C -0.181 4.181 5 C -0.140 4.140 6 H 0.111 0.889 7 C 0.087 3.913 8 N -0.537 5.537 9 C 0.063 3.937 10 C -0.119 4.119 11 C -0.110 4.110 12 C 0.054 3.946 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.889 5.889 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.275 1.275 21 H -0.287 1.287 22 C 0.068 3.932 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.019 0.981 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.028 0.972 36 H 0.259 0.741 37 H 0.017 0.983 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.751 10.489 -9.691 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.174 4.174 3 H 0.119 0.881 4 C -0.218 4.218 5 C -0.159 4.159 6 H 0.129 0.871 7 C -0.041 4.041 8 N -0.262 5.262 9 C -0.065 4.065 10 C -0.157 4.157 11 C -0.148 4.148 12 C 0.036 3.964 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.200 1.200 21 H -0.213 1.213 22 C -0.059 4.059 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.044 0.956 29 H 0.091 0.909 30 H 0.038 0.962 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.036 0.964 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.441 10.643 -9.176 14.126 hybrid contribution -0.764 -1.282 -0.421 1.551 sum -2.206 9.360 -9.597 13.586 Atomic orbital electron populations 1.21328 0.93076 1.01598 1.01905 1.22363 0.95326 0.94329 1.05393 0.88145 1.23188 1.02290 1.01589 0.94744 1.22463 1.01362 0.99028 0.93017 0.87107 1.21629 0.94302 0.92931 0.95213 1.62076 1.09270 1.17977 1.36879 1.22048 0.92580 0.97486 0.94369 1.21695 0.96943 0.98438 0.98576 1.21644 0.99423 0.95122 0.98637 1.18661 0.91719 0.93113 0.92937 0.94794 1.21160 0.98001 1.07994 1.28140 0.92897 1.24935 0.94903 0.97900 0.96102 1.69898 1.11723 1.36281 1.34848 0.86632 0.79920 0.82475 0.79169 1.20708 1.20048 1.21288 1.22295 0.96444 0.89554 0.97568 0.92017 0.92573 0.92609 0.89178 0.89114 0.95566 0.90915 0.96232 0.91948 0.93692 0.92193 0.89166 0.95272 0.93095 0.96431 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.20 37.16 0.34 -0.89 16 2 C -0.16 -1.71 6.41 -90.59 -0.58 -2.29 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.18 -2.09 9.83 -26.70 -0.26 -2.36 16 5 C -0.14 -1.86 4.24 -90.63 -0.38 -2.25 16 6 H 0.11 1.54 7.32 -51.92 -0.38 1.16 16 7 C 0.09 1.37 4.63 -3.83 -0.02 1.35 16 8 N -0.54 -10.28 4.81 -234.67 -1.13 -11.41 16 9 C 0.06 1.15 5.08 -3.83 -0.02 1.13 16 10 C -0.12 -2.39 6.09 -26.65 -0.16 -2.56 16 11 C -0.11 -2.67 5.03 -26.61 -0.13 -2.81 16 12 C 0.05 1.40 2.26 -91.69 -0.21 1.19 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.51 -14.32 8.56 -34.44 -0.29 -14.61 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.89 -25.65 11.35 55.43 0.63 -25.02 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.07 1.50 4.65 -3.83 -0.02 1.48 16 23 H 0.06 0.63 7.84 -51.93 -0.41 0.22 16 24 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 26 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 27 H 0.09 1.07 7.94 -51.93 -0.41 0.66 16 28 H 0.03 0.42 7.81 -51.93 -0.41 0.01 16 29 H 0.07 1.12 7.77 -51.93 -0.40 0.72 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 1.01 6.02 -51.93 -0.31 0.69 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 35 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.06 1.25 8.12 -51.93 -0.42 0.83 16 LS Contribution 294.50 15.07 4.44 4.44 Total: -1.00 -28.20 294.50 -9.73 -37.93 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -6.82 Total: -1.41 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -1.83 Total: -20.95 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.50 Total: -36.43 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.20 -9.73 -37.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.293 kcal (2) G-P(sol) polarization free energy of solvation -28.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds