Wall clock time and date at job start Sun Mar 29 2020 21:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 115.55910 * 2 1 4 4 C 1.53065 * 117.51464 * 214.29799 * 2 1 3 5 5 C 1.52996 * 59.98596 * 252.52217 * 4 2 1 6 6 H 1.09009 * 117.50049 * 252.50386 * 5 4 2 7 7 C 1.52994 * 117.50185 * 107.49940 * 5 4 2 8 8 N 1.46903 * 109.47162 * 116.25489 * 7 5 4 9 9 C 1.46848 * 110.99773 * 314.21191 * 8 7 5 10 10 C 1.53041 * 109.51824 * 174.16048 * 9 8 7 11 11 C 1.53120 * 109.31192 * 59.16077 * 10 9 8 12 12 C 1.53117 * 109.15979 * 302.40409 * 11 10 9 13 13 H 1.09003 * 109.50058 * 297.63675 * 12 11 10 14 14 C 1.50694 * 109.50559 * 177.55528 * 12 11 10 15 15 H 1.08000 * 120.00563 * 240.07626 * 14 12 11 16 16 C 1.37885 * 119.99902 * 60.07790 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.47353 * 269.99586 * 18 16 14 20 20 H 1.48501 * 109.47293 * 30.00037 * 18 16 14 21 21 H 1.48504 * 109.46680 * 149.99835 * 18 16 14 22 22 C 1.46844 * 110.99988 * 190.00405 * 8 7 5 23 23 H 1.08997 * 109.47224 * 274.31289 * 1 2 3 24 24 H 1.09002 * 109.47339 * 34.31092 * 1 2 3 25 25 H 1.08999 * 109.47166 * 154.31267 * 1 2 3 26 26 H 1.09007 * 117.49714 * 145.03717 * 4 2 1 27 27 H 1.08998 * 117.53421 * 359.97438 * 4 2 1 28 28 H 1.08999 * 109.46999 * 356.25707 * 7 5 4 29 29 H 1.08994 * 109.47578 * 236.25668 * 7 5 4 30 30 H 1.08997 * 109.46229 * 294.17391 * 9 8 7 31 31 H 1.08997 * 109.46146 * 54.15751 * 9 8 7 32 32 H 1.09002 * 109.49792 * 179.12111 * 10 9 8 33 33 H 1.08998 * 109.50248 * 299.23656 * 10 9 8 34 34 H 1.08998 * 109.55773 * 182.47426 * 11 10 9 35 35 H 1.09000 * 109.49315 * 62.28675 * 11 10 9 36 36 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 37 37 H 1.08999 * 109.46629 * 65.82095 * 22 8 7 38 38 H 1.09006 * 109.45466 * 305.84704 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2371 -1.1215 -0.7650 5 6 2.2364 -1.1210 0.7650 6 1 3.1714 -0.8749 1.2687 7 6 1.3589 -2.1561 1.4715 8 7 2.2083 -3.0743 2.2417 9 6 3.3586 -3.5202 1.4452 10 6 4.2948 -4.3551 2.3218 11 6 3.5311 -5.5635 2.8707 12 6 2.3106 -5.0729 3.6544 13 1 2.6402 -4.4758 4.5047 14 6 1.5200 -6.2572 4.1475 15 1 0.4927 -6.3866 3.8402 16 6 2.1080 -7.1759 4.9910 17 7 3.3591 -7.0187 5.3648 18 14 1.1277 -8.6435 5.6027 19 1 0.4436 -8.2877 6.8718 20 1 0.1156 -9.0221 4.5841 21 1 2.0446 -9.7876 5.8385 22 6 1.4319 -4.2172 2.7392 23 1 -0.3633 0.0773 1.0247 24 1 -0.3634 0.8488 -0.5793 25 1 -0.3633 -0.9261 -0.4454 26 1 3.1724 -0.8756 -1.2679 27 1 1.6127 -1.8598 -1.2680 28 1 0.7936 -2.7201 0.7296 29 1 0.6687 -1.6483 2.1451 30 1 3.0085 -4.1252 0.6088 31 1 3.8959 -2.6513 1.0651 32 1 5.1406 -4.6990 1.7263 33 1 4.6562 -3.7466 3.1508 34 1 4.1816 -6.1371 3.5309 35 1 3.2037 -6.1932 2.0434 36 1 3.7726 -7.6648 5.9585 37 1 1.0909 -4.8189 1.8968 38 1 0.5698 -3.8543 3.2989 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177533.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:15 Heat of formation + Delta-G solvation = -6.287243 kcal Electronic energy + Delta-G solvation = -15759.177134 eV Core-core repulsion = 13407.791343 eV Total energy + Delta-G solvation = -2351.385790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.26953 -38.42392 -35.36739 -33.31708 -31.72029 -29.41012 -27.64732 -26.90681 -23.73746 -23.32014 -22.22869 -20.39383 -19.99522 -18.45068 -17.33146 -16.58715 -15.81871 -15.65171 -15.32245 -14.89716 -14.62722 -14.25499 -13.93870 -13.79052 -13.57826 -13.18427 -12.91841 -12.82014 -12.67844 -12.53764 -12.32600 -12.00432 -11.83967 -11.69403 -11.36654 -10.92220 -10.76897 -10.67306 -10.54317 -10.37184 -9.10553 -8.08008 -6.22505 1.41610 1.41632 1.52182 2.42796 2.84110 3.12810 3.18820 3.78766 3.97062 4.00235 4.23712 4.27128 4.39843 4.44494 4.50402 4.57873 4.69955 4.75785 4.85215 4.90881 4.92775 4.96374 4.98973 5.02678 5.15223 5.17288 5.22157 5.32114 5.39849 5.47138 5.52549 5.63303 5.96806 6.12813 6.21417 6.39542 6.46353 6.89960 7.45360 8.96811 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049034 B = 0.006112 C = 0.005627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.891573 B = 4580.202480 C = 4974.784255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.141 4.141 3 H 0.116 0.884 4 C -0.174 4.174 5 C -0.159 4.159 6 H 0.106 0.894 7 C 0.091 3.909 8 N -0.548 5.548 9 C 0.070 3.930 10 C -0.113 4.113 11 C -0.104 4.104 12 C 0.052 3.948 13 H -0.004 1.004 14 C -0.538 4.538 15 H 0.051 0.949 16 C 0.014 3.986 17 N -0.916 5.916 18 Si 0.956 3.044 19 H -0.275 1.275 20 H -0.269 1.269 21 H -0.282 1.282 22 C 0.082 3.918 23 H 0.058 0.942 24 H 0.073 0.927 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.088 0.912 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.020 0.980 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.021 0.979 36 H 0.261 0.739 37 H 0.012 0.988 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.154 11.416 -11.093 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 H 0.134 0.866 4 C -0.211 4.211 5 C -0.177 4.177 6 H 0.124 0.876 7 C -0.036 4.036 8 N -0.273 5.273 9 C -0.058 4.058 10 C -0.150 4.150 11 C -0.142 4.142 12 C 0.033 3.967 13 H 0.014 0.986 14 C -0.576 4.576 15 H 0.069 0.931 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.781 3.219 19 H -0.201 1.201 20 H -0.194 1.194 21 H -0.208 1.208 22 C -0.045 4.045 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.069 0.931 26 H 0.123 0.877 27 H 0.106 0.894 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.038 0.962 31 H 0.110 0.890 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.850 11.586 -10.589 15.804 hybrid contribution -0.637 -1.535 0.024 1.662 sum -2.487 10.051 -10.565 14.793 Atomic orbital electron populations 1.21367 0.92563 1.02179 1.02022 1.22484 0.95761 0.94466 1.03238 0.86559 1.23253 1.03013 1.01623 0.93214 1.22309 1.01334 1.00019 0.94028 0.87561 1.21625 0.94322 0.92685 0.94980 1.62003 1.09804 1.17029 1.38438 1.22023 0.91998 0.98247 0.93522 1.21621 0.97704 0.96798 0.98921 1.21458 0.98747 0.96425 0.97550 1.18589 0.92767 0.92698 0.92620 0.98561 1.21521 0.98230 1.09122 1.28769 0.93121 1.25732 0.95877 1.00632 0.96219 1.70041 1.13089 1.37196 1.35182 0.85598 0.78584 0.78986 0.78722 1.20069 1.19353 1.20773 1.21963 0.95814 0.90098 0.96665 0.92351 0.90760 0.93126 0.87710 0.89366 0.95601 0.90976 0.96209 0.89007 0.91262 0.93127 0.92329 0.96053 0.93029 0.96935 0.92673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.20 9.20 71.98 0.66 -1.54 16 2 C -0.14 -2.68 6.41 -10.77 -0.07 -2.75 16 3 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 4 C -0.17 -3.49 9.83 30.61 0.30 -3.19 16 5 C -0.16 -3.83 4.24 -10.80 -0.05 -3.88 16 6 H 0.11 2.70 7.32 -2.38 -0.02 2.68 16 7 C 0.09 2.74 4.63 86.30 0.40 3.14 16 8 N -0.55 -20.63 4.81 -896.37 -4.31 -24.94 16 9 C 0.07 2.44 5.08 86.33 0.44 2.87 16 10 C -0.11 -4.49 6.09 30.65 0.19 -4.30 16 11 C -0.10 -5.14 5.03 30.67 0.15 -4.99 16 12 C 0.05 2.75 2.26 -11.49 -0.03 2.73 16 13 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 14 C -0.54 -30.67 8.56 25.60 0.22 -30.45 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.80 5.30 84.66 0.45 1.25 16 17 N -0.92 -54.18 11.35 21.45 0.24 -53.93 16 18 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 C 0.08 3.65 4.65 86.33 0.40 4.06 16 23 H 0.06 1.08 7.84 -2.39 -0.02 1.06 16 24 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 0.94 7.90 -2.39 -0.02 0.93 16 26 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 27 H 0.09 1.84 7.94 -2.39 -0.02 1.82 16 28 H 0.03 0.78 7.81 -2.39 -0.02 0.76 16 29 H 0.07 2.15 7.77 -2.39 -0.02 2.13 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 2.71 6.02 -2.39 -0.01 2.70 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.06 3.27 6.15 -2.39 -0.01 3.25 16 35 H 0.02 1.04 8.14 -2.39 -0.02 1.03 16 36 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 37 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.05 2.43 8.12 -2.38 -0.02 2.41 16 Total: -1.00 -61.23 294.50 2.03 -59.21 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: 0.99 Total: 10.29 kcal Atomic # 6 Polarization: -40.12 SS G_CDS: 3.07 Total: -37.05 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -4.06 Total: -78.87 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.23 2.03 -59.21 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177533.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.921 kcal (2) G-P(sol) polarization free energy of solvation -61.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds