Wall clock time and date at job start Sun Mar 29 2020 21:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08992 * 115.55741 * 2 1 4 4 C 1.53080 * 117.48803 * 214.27736 * 2 1 3 5 5 C 1.52997 * 117.49598 * 145.67640 * 2 1 3 6 6 H 1.09004 * 117.50270 * 359.97309 * 5 2 1 7 7 C 1.52996 * 117.50127 * 214.97237 * 5 2 1 8 8 N 1.46898 * 109.47437 * 175.08708 * 7 5 2 9 9 C 1.46846 * 110.99964 * 294.21330 * 8 7 5 10 10 C 1.53032 * 109.52443 * 174.16225 * 9 8 7 11 11 C 1.53123 * 109.28121 * 59.17535 * 10 9 8 12 12 C 1.53124 * 109.16220 * 302.35028 * 11 10 9 13 13 H 1.08993 * 109.50112 * 297.71243 * 12 11 10 14 14 C 1.50694 * 109.50452 * 177.59212 * 12 11 10 15 15 H 1.07996 * 119.99999 * 240.20030 * 14 12 11 16 16 C 1.37881 * 119.99747 * 60.19356 * 14 12 11 17 17 N 1.31510 * 120.00151 * 0.02562 * 16 14 12 18 18 Si 1.86805 * 119.99626 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47176 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47021 * 120.00245 * 18 16 14 21 21 H 1.48504 * 109.46852 * 240.00213 * 18 16 14 22 22 C 1.46846 * 111.00056 * 170.00362 * 8 7 5 23 23 H 1.09005 * 109.46886 * 274.33019 * 1 2 3 24 24 H 1.09006 * 109.46811 * 34.32057 * 1 2 3 25 25 H 1.08990 * 109.47416 * 154.32823 * 1 2 3 26 26 H 1.08997 * 117.51546 * 145.03955 * 4 2 1 27 27 H 1.09002 * 117.49478 * 359.97438 * 4 2 1 28 28 H 1.09002 * 109.46910 * 55.08703 * 7 5 2 29 29 H 1.09003 * 109.47500 * 295.09505 * 7 5 2 30 30 H 1.09009 * 109.46169 * 294.17270 * 9 8 7 31 31 H 1.08995 * 109.46669 * 54.15371 * 9 8 7 32 32 H 1.09001 * 109.50949 * 179.12117 * 10 9 8 33 33 H 1.09000 * 109.50361 * 299.23864 * 10 9 8 34 34 H 1.09001 * 109.51952 * 62.25288 * 11 10 9 35 35 H 1.09002 * 109.52604 * 182.38110 * 11 10 9 36 36 H 0.97002 * 119.99580 * 179.97438 * 17 16 14 37 37 H 1.09008 * 109.46456 * 305.85644 * 22 8 7 38 38 H 1.09003 * 109.46474 * 65.82149 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2366 -1.1221 -0.7648 5 6 2.2364 -1.1208 0.7652 6 1 1.6112 -1.8580 1.2691 7 6 3.5490 -0.7758 1.4715 8 7 4.0108 -1.9381 2.2420 9 6 3.0858 -2.2419 3.3413 10 6 3.5177 -3.5388 4.0295 11 6 4.9423 -3.3759 4.5666 12 6 5.8772 -3.0123 3.4096 13 1 5.8876 -3.8234 2.6816 14 6 7.2708 -2.7922 3.9390 15 1 7.7522 -1.8340 3.8106 16 6 7.9313 -3.8142 4.5874 17 7 7.3453 -4.9811 4.7434 18 14 9.6592 -3.5415 5.2429 19 1 10.0900 -2.1529 4.9406 20 1 9.6703 -3.7538 6.7126 21 1 10.5907 -4.5010 4.5971 22 6 5.3768 -1.7307 2.7395 23 1 -0.3633 0.0776 1.0248 24 1 -0.3633 0.8488 -0.5795 25 1 -0.3634 -0.9261 -0.4452 26 1 3.1718 -0.8771 -1.2682 27 1 1.6111 -1.8600 -1.2672 28 1 3.3888 0.0662 2.1450 29 1 4.3018 -0.5093 0.7296 30 1 3.0994 -1.4256 4.0636 31 1 2.0772 -2.3596 2.9453 32 1 2.8401 -3.7558 4.8552 33 1 3.4911 -4.3582 3.3112 34 1 4.9615 -2.5823 5.3136 35 1 5.2697 -4.3113 5.0205 36 1 7.8102 -5.7002 5.1992 37 1 6.0322 -1.4769 1.9063 38 1 5.3797 -0.9168 3.4645 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177534.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:17 Heat of formation + Delta-G solvation = 7.801123 kcal Electronic energy + Delta-G solvation = -15608.161132 eV Core-core repulsion = 13257.386259 eV Total energy + Delta-G solvation = -2350.774873 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.71125 -37.14526 -33.55254 -31.63142 -29.87553 -28.76014 -25.83159 -24.92928 -22.21856 -21.64710 -20.70866 -19.76192 -18.53012 -16.39868 -15.38193 -14.95298 -14.64219 -14.31877 -13.58034 -13.36408 -13.23797 -12.93946 -12.55279 -12.28639 -12.09592 -11.95108 -11.44527 -11.32039 -11.04149 -10.93080 -10.64437 -10.60049 -10.09205 -9.84798 -9.76910 -9.66391 -9.42120 -8.95171 -8.65693 -8.27220 -7.57895 -5.94533 -4.00507 3.31725 3.39674 3.43438 3.81310 4.39426 4.53359 4.87677 4.95363 5.06365 5.28270 5.35657 5.58605 5.63961 5.69740 5.78238 5.82206 5.89884 5.93334 5.97030 6.02814 6.13465 6.26821 6.31695 6.45153 6.48394 6.56517 6.76631 6.79933 7.01628 7.26803 7.45084 7.73400 7.79441 7.89251 8.12819 8.21295 8.52057 9.03905 9.63661 11.11557 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.054446 B = 0.005704 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.150186 B = 4907.560087 C = 5184.983506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.163 4.163 3 H 0.099 0.901 4 C -0.171 4.171 5 C -0.136 4.136 6 H 0.107 0.893 7 C 0.085 3.915 8 N -0.536 5.536 9 C 0.062 3.938 10 C -0.118 4.118 11 C -0.110 4.110 12 C 0.054 3.946 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.284 1.284 22 C 0.068 3.932 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.090 0.910 36 H 0.259 0.741 37 H 0.058 0.942 38 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.942 7.173 -6.353 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.182 4.182 3 H 0.118 0.882 4 C -0.208 4.208 5 C -0.154 4.154 6 H 0.125 0.875 7 C -0.043 4.043 8 N -0.260 5.260 9 C -0.066 4.066 10 C -0.156 4.156 11 C -0.148 4.148 12 C 0.035 3.965 13 H 0.052 0.948 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.059 4.059 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.110 0.890 27 H 0.108 0.892 28 H 0.046 0.954 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.064 0.936 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -10.890 6.596 -6.586 14.334 hybrid contribution 0.957 0.817 0.935 1.568 sum -9.932 7.413 -5.651 13.621 Atomic orbital electron populations 1.21333 0.93160 1.01606 1.01597 1.22408 0.94977 0.94711 1.06108 0.88243 1.23143 1.02183 1.00735 0.94699 1.22449 0.98564 1.00667 0.93716 0.87523 1.21622 0.94319 0.91861 0.96521 1.61949 1.03398 1.36386 1.24307 1.22059 0.95253 0.97625 0.91653 1.21680 0.99088 0.96299 0.98487 1.21649 0.91407 1.02736 0.99039 1.18667 0.93056 0.91566 0.93161 0.94757 1.21197 0.99529 0.98091 1.36434 0.92826 1.24935 0.97715 0.95149 0.96053 1.69908 1.37103 1.02759 1.42961 0.86580 0.84914 0.78169 0.78575 1.19876 1.21115 1.21041 1.22303 0.86409 0.99852 0.97310 0.92423 0.92509 0.92659 0.88973 0.89170 0.95390 0.91204 0.96087 0.92297 0.93634 0.92122 0.95235 0.89174 0.93149 0.92376 0.96424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 10.19 37.16 0.38 -0.76 16 2 C -0.16 -1.83 6.13 -90.58 -0.56 -2.39 16 3 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.17 -2.04 9.83 -26.69 -0.26 -2.31 16 5 C -0.14 -1.83 5.38 -90.62 -0.49 -2.32 16 6 H 0.11 1.51 6.33 -51.93 -0.33 1.18 16 7 C 0.09 1.34 5.24 -3.83 -0.02 1.32 16 8 N -0.54 -10.25 4.66 -234.67 -1.09 -11.34 16 9 C 0.06 1.13 5.30 -3.84 -0.02 1.11 16 10 C -0.12 -2.36 6.09 -26.65 -0.16 -2.53 16 11 C -0.11 -2.66 5.03 -26.60 -0.13 -2.80 16 12 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 13 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.51 -14.29 8.56 -34.44 -0.29 -14.58 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 17 N -0.89 -25.62 11.37 55.43 0.63 -24.99 16 18 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 C 0.07 1.49 4.68 -3.84 -0.02 1.47 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.51 7.90 -51.93 -0.41 0.10 16 26 H 0.09 1.09 8.03 -51.93 -0.42 0.67 16 27 H 0.09 1.00 8.05 -51.93 -0.42 0.59 16 28 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 29 H 0.07 1.08 7.72 -51.93 -0.40 0.68 16 30 H 0.02 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.06 0.94 6.15 -51.93 -0.32 0.62 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 2.42 6.17 -51.93 -0.32 2.10 16 36 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 37 H 0.06 1.26 8.02 -51.92 -0.42 0.84 16 38 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -28.21 296.71 -9.69 -37.90 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -6.80 Total: -1.50 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -1.88 Total: -20.94 kcal Atomic # 7 Polarization: -35.87 SS G_CDS: -0.46 Total: -36.33 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.21 -9.69 -37.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177534.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.702 kcal (2) G-P(sol) polarization free energy of solvation -28.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds