Wall clock time and date at job start Sun Mar 29 2020 21:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99590 * 3 2 1 5 5 H 1.48498 * 109.47173 * 29.99706 * 3 2 1 6 6 H 1.48503 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37877 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.16987 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93012 * 220.14348 * 10 9 7 12 12 C 1.46899 * 111.00040 * 138.70909 * 11 10 9 13 13 C 1.50691 * 109.47252 * 169.99770 * 12 11 10 14 14 C 1.33639 * 126.03915 * 89.99885 * 13 12 11 15 15 N 1.31784 * 114.50230 * 179.97438 * 14 13 12 16 16 C 1.29023 * 117.12236 * 0.02562 * 15 14 13 17 17 S 1.70979 * 110.17115 * 359.97438 * 16 15 14 18 18 C 1.47480 * 87.83758 * 27.01142 * 11 10 9 19 19 H 0.97000 * 119.99831 * 0.02562 * 1 2 3 20 20 H 1.09000 * 113.25854 * 312.95798 * 9 7 2 21 21 H 1.09000 * 113.47251 * 105.37730 * 10 9 7 22 22 H 1.09003 * 113.53061 * 334.91906 * 10 9 7 23 23 H 1.09005 * 109.47508 * 49.99275 * 12 11 10 24 24 H 1.09008 * 109.46924 * 289.99504 * 12 11 10 25 25 H 1.07999 * 122.75182 * 359.92431 * 14 13 12 26 26 H 1.08009 * 124.91541 * 179.97438 * 16 15 14 27 27 H 1.09003 * 113.47436 * 87.76006 * 18 11 10 28 28 H 1.08999 * 113.47000 * 218.22013 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.1497 -3.7438 0.0028 11 7 1.2051 -4.3610 -0.9468 12 6 1.9207 -5.0919 -2.0011 13 6 0.9386 -5.9063 -2.8031 14 6 0.2851 -5.4978 -3.8949 15 7 -0.5216 -6.3990 -4.4181 16 6 -0.5854 -7.5446 -3.8281 17 16 0.4492 -7.5653 -2.4670 18 6 0.8519 -3.0005 -1.3933 19 1 -0.4850 0.8401 -0.0004 20 1 0.4451 -2.5302 0.7349 21 1 2.1889 -4.2501 0.9673 22 1 3.1383 -3.5671 -0.4210 23 1 2.6577 -5.7549 -1.5477 24 1 2.4252 -4.3823 -2.6569 25 1 0.4075 -4.5099 -4.3137 26 1 -1.2030 -8.3711 -4.1477 27 1 1.4938 -2.6246 -2.1900 28 1 -0.2088 -2.8771 -1.6120 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:40 Heat of formation + Delta-G solvation = 80.576051 kcal Electronic energy + Delta-G solvation = -12805.212845 eV Core-core repulsion = 10563.254500 eV Total energy + Delta-G solvation = -2241.958344 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.61196 -38.73418 -33.09047 -31.80555 -28.40993 -26.10616 -24.84981 -24.33477 -22.12867 -19.87447 -18.66086 -17.87851 -16.68353 -15.46713 -15.01386 -14.49843 -14.17963 -13.98516 -13.72757 -13.70054 -12.55816 -12.02393 -11.87014 -11.40550 -11.15680 -10.99673 -10.65919 -10.33550 -9.90468 -9.50484 -9.49609 -9.04485 -8.99732 -8.71381 -8.46973 -8.10699 -6.08984 -4.14240 0.87607 1.52115 1.91686 3.00793 3.26360 3.33879 3.36371 4.36901 4.46686 4.86580 5.11700 5.24368 5.32987 5.38234 5.74790 5.88838 6.03383 6.25544 6.31544 6.39023 6.60477 6.63146 7.07024 7.09350 7.67752 7.83248 7.84596 7.97531 8.31938 8.89172 9.51258 11.00500 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.058532 B = 0.005924 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.254183 B = 4725.184322 C = 4926.332834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.043 3.957 10 C -0.005 4.005 11 N -0.480 5.480 12 C 0.090 3.910 13 C -0.177 4.177 14 C 0.025 3.975 15 N -0.469 5.469 16 C -0.001 4.001 17 S 0.121 5.879 18 C 0.005 3.995 19 H 0.262 0.738 20 H 0.065 0.935 21 H 0.064 0.936 22 H 0.056 0.944 23 H 0.076 0.924 24 H 0.065 0.935 25 H 0.173 0.827 26 H 0.194 0.806 27 H 0.055 0.945 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.123 -12.544 -4.968 13.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.076 0.924 9 C 0.024 3.976 10 C -0.133 4.133 11 N -0.203 5.203 12 C -0.041 4.041 13 C -0.299 4.299 14 C -0.126 4.126 15 N -0.182 5.182 16 C -0.298 4.298 17 S 0.372 5.628 18 C -0.124 4.124 19 H 0.072 0.928 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.074 0.926 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.190 0.810 26 H 0.211 0.789 27 H 0.074 0.926 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.343 -13.595 -4.507 14.385 hybrid contribution 1.039 2.165 -0.886 2.559 sum 2.382 -11.430 -5.393 12.861 Atomic orbital electron populations 1.69967 1.06011 1.26837 1.49373 1.25024 0.94823 0.99210 0.94531 0.86609 0.79925 0.83405 0.78163 1.20625 1.21114 1.19808 1.21017 0.92744 0.90183 1.51704 0.92360 1.20089 0.94261 0.90782 0.92518 1.24044 0.95772 0.97696 0.95830 1.68947 1.27130 1.14485 1.09737 1.21071 0.92536 0.96456 0.94019 1.25962 1.06032 0.97197 1.00691 1.21729 0.95548 1.00197 0.95135 1.66286 1.19399 1.01028 1.31506 1.28246 1.04536 0.99720 0.97332 1.83891 1.38593 1.11307 1.29036 1.24155 1.00431 0.86290 1.01487 0.92794 0.91721 0.91760 0.92571 0.90561 0.91742 0.81020 0.78910 0.92645 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.31 13.26 55.43 0.74 -24.58 15 2 C 0.07 1.83 5.46 -17.82 -0.10 1.73 15 3 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.85 15 7 C -0.52 -13.82 8.83 -34.44 -0.30 -14.13 15 8 H 0.06 1.52 7.81 -52.49 -0.41 1.11 15 9 C 0.04 1.05 3.76 -91.24 -0.34 0.70 15 10 C 0.00 -0.10 7.25 -7.54 -0.05 -0.15 15 11 N -0.48 -9.44 6.32 -246.08 -1.55 -11.00 15 12 C 0.09 1.46 5.35 -4.98 -0.03 1.44 15 13 C -0.18 -2.75 6.18 -35.92 -0.22 -2.97 15 14 C 0.02 0.39 11.25 -19.18 -0.22 0.18 15 15 N -0.47 -7.29 10.54 -15.75 -0.17 -7.45 15 16 C 0.00 -0.01 12.23 51.58 0.63 0.62 15 17 S 0.12 1.54 23.22 -107.50 -2.50 -0.96 15 18 C 0.01 0.12 7.28 -7.54 -0.05 0.06 15 19 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 20 H 0.06 1.76 8.11 -51.93 -0.42 1.33 15 21 H 0.06 1.23 8.14 -51.93 -0.42 0.81 15 22 H 0.06 1.09 7.87 -51.93 -0.41 0.68 15 23 H 0.08 1.12 8.08 -51.93 -0.42 0.70 15 24 H 0.06 1.03 7.30 -51.92 -0.38 0.65 15 25 H 0.17 2.61 8.06 -52.49 -0.42 2.18 15 26 H 0.19 1.68 8.06 -52.48 -0.42 1.26 15 27 H 0.06 1.22 7.38 -51.93 -0.38 0.84 15 28 H 0.06 1.54 8.14 -51.93 -0.42 1.12 15 LS Contribution 259.05 15.07 3.90 3.90 Total: -1.00 -28.99 259.05 -8.53 -37.52 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -3.25 Total: -0.68 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.69 Total: -12.51 kcal Atomic # 7 Polarization: -42.04 SS G_CDS: -0.98 Total: -43.03 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 1.54 SS G_CDS: -2.50 Total: -0.96 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.99 -8.53 -37.52 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.098 kcal (2) G-P(sol) polarization free energy of solvation -28.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds