Wall clock time and date at job start Sun Mar 29 2020 21:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99903 * 2 1 4 4 H 1.48503 * 109.46851 * 269.99590 * 3 2 1 5 5 H 1.48498 * 109.47173 * 29.99706 * 3 2 1 6 6 H 1.48503 * 109.47018 * 150.00097 * 3 2 1 7 7 C 1.37877 * 120.00285 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00152 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99764 * 359.97438 * 7 2 1 10 10 C 1.53516 * 114.16987 * 180.02562 * 9 7 2 11 11 N 1.47480 * 87.93012 * 220.14348 * 10 9 7 12 12 C 1.46899 * 111.00040 * 138.70909 * 11 10 9 13 13 C 1.50691 * 109.47252 * 169.99770 * 12 11 10 14 14 C 1.33639 * 126.03915 * 89.99885 * 13 12 11 15 15 N 1.31784 * 114.50230 * 179.97438 * 14 13 12 16 16 C 1.29023 * 117.12236 * 0.02562 * 15 14 13 17 17 S 1.70979 * 110.17115 * 359.97438 * 16 15 14 18 18 C 1.47480 * 87.83758 * 27.01142 * 11 10 9 19 19 H 0.97000 * 119.99831 * 0.02562 * 1 2 3 20 20 H 1.09000 * 113.25854 * 312.95798 * 9 7 2 21 21 H 1.09000 * 113.47251 * 105.37730 * 10 9 7 22 22 H 1.09003 * 113.53061 * 334.91906 * 10 9 7 23 23 H 1.09005 * 109.47508 * 49.99275 * 12 11 10 24 24 H 1.09008 * 109.46924 * 289.99504 * 12 11 10 25 25 H 1.07999 * 122.75182 * 359.92431 * 14 13 12 26 26 H 1.08009 * 124.91541 * 179.97438 * 16 15 14 27 27 H 1.09003 * 113.47436 * 87.76006 * 18 11 10 28 28 H 1.08999 * 113.47000 * 218.22013 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.1497 -3.7438 0.0028 11 7 1.2051 -4.3610 -0.9468 12 6 1.9207 -5.0919 -2.0011 13 6 0.9386 -5.9063 -2.8031 14 6 0.2851 -5.4978 -3.8949 15 7 -0.5216 -6.3990 -4.4181 16 6 -0.5854 -7.5446 -3.8281 17 16 0.4492 -7.5653 -2.4670 18 6 0.8519 -3.0005 -1.3933 19 1 -0.4850 0.8401 -0.0004 20 1 0.4451 -2.5302 0.7349 21 1 2.1889 -4.2501 0.9673 22 1 3.1383 -3.5671 -0.4210 23 1 2.6577 -5.7549 -1.5477 24 1 2.4252 -4.3823 -2.6569 25 1 0.4075 -4.5099 -4.3137 26 1 -1.2030 -8.3711 -4.1477 27 1 1.4938 -2.6246 -2.1900 28 1 -0.2088 -2.8771 -1.6120 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194629.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:40 Heat of formation + Delta-G solvation = 60.161995 kcal Electronic energy + Delta-G solvation = -12806.098064 eV Core-core repulsion = 10563.254500 eV Total energy + Delta-G solvation = -2242.843564 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.96696 -40.17745 -34.93353 -33.33445 -29.93950 -27.67258 -26.55844 -25.78750 -23.66273 -21.03059 -20.45771 -19.05100 -18.56676 -16.79020 -16.75562 -16.14018 -15.75213 -15.41113 -15.06214 -14.82363 -13.91158 -13.90044 -13.45681 -13.11822 -12.84420 -12.64763 -12.35374 -11.94743 -11.67865 -11.28290 -10.91150 -10.59537 -10.52268 -10.16830 -9.90472 -9.70081 -8.15549 -6.27213 -0.20855 0.47266 0.84451 1.42889 1.43974 1.54301 1.86868 2.42400 3.13957 3.32268 3.49680 3.85389 4.05124 4.25107 4.40065 4.47434 4.55323 4.60683 4.78533 4.83752 4.95115 5.17944 5.22265 5.43314 5.62251 5.83986 6.26768 6.32416 6.75411 6.83035 7.41855 8.94212 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.058532 B = 0.005924 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.254183 B = 4725.184322 C = 4926.332834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.014 3.986 3 Si 0.958 3.042 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.529 4.529 8 H 0.063 0.937 9 C 0.020 3.980 10 C 0.012 3.988 11 N -0.480 5.480 12 C 0.093 3.907 13 C -0.208 4.208 14 C 0.016 3.984 15 N -0.502 5.502 16 C 0.011 3.989 17 S 0.166 5.834 18 C 0.020 3.980 19 H 0.262 0.738 20 H 0.028 0.972 21 H 0.078 0.922 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.066 0.934 25 H 0.166 0.834 26 H 0.233 0.767 27 H 0.056 0.944 28 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -13.887 -5.265 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.186 4.186 3 Si 0.783 3.217 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.081 0.919 9 C 0.001 3.999 10 C -0.116 4.116 11 N -0.203 5.203 12 C -0.037 4.037 13 C -0.330 4.330 14 C -0.135 4.135 15 N -0.216 5.216 16 C -0.286 4.286 17 S 0.418 5.582 18 C -0.110 4.110 19 H 0.071 0.929 20 H 0.047 0.953 21 H 0.096 0.904 22 H 0.088 0.912 23 H 0.116 0.884 24 H 0.084 0.916 25 H 0.183 0.817 26 H 0.249 0.751 27 H 0.074 0.926 28 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.426 -14.961 -4.797 15.897 hybrid contribution 0.663 2.443 -0.797 2.654 sum 3.089 -12.518 -5.594 14.055 Atomic orbital electron populations 1.70102 1.07628 1.27578 1.50873 1.25849 0.95567 1.02802 0.94349 0.85559 0.78808 0.79025 0.78292 1.20076 1.21155 1.18751 1.21385 0.93134 0.91272 1.50942 0.91876 1.20044 0.94597 0.92287 0.93002 1.23863 0.95553 0.95352 0.96875 1.68845 1.27821 1.12947 1.10662 1.21048 0.92876 0.96599 0.93211 1.25930 1.06805 0.99205 1.01056 1.21786 0.95840 1.00407 0.95506 1.66325 1.20432 1.02093 1.32780 1.28967 1.03597 0.99622 0.96461 1.83700 1.37637 1.08614 1.28252 1.23847 0.98835 0.88166 1.00113 0.92902 0.95341 0.90400 0.91196 0.88390 0.91596 0.81680 0.75085 0.92572 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 13.26 21.45 0.28 -53.86 15 2 C 0.01 0.75 5.46 84.65 0.46 1.21 15 3 Si 0.96 42.74 29.54 68.60 2.03 44.76 15 4 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 5 H -0.29 -12.66 7.11 99.48 0.71 -11.96 15 6 H -0.26 -11.21 7.11 99.48 0.71 -10.51 15 7 C -0.53 -28.37 8.83 25.60 0.23 -28.14 15 8 H 0.06 3.24 7.81 -2.91 -0.02 3.22 15 9 C 0.02 0.99 3.76 -11.19 -0.04 0.95 15 10 C 0.01 0.47 7.25 83.58 0.61 1.08 15 11 N -0.48 -18.51 6.32 -932.46 -5.89 -24.40 15 12 C 0.09 2.87 5.35 85.55 0.46 3.33 15 13 C -0.21 -6.15 6.18 24.64 0.15 -6.00 15 14 C 0.02 0.49 11.25 83.66 0.94 1.43 15 15 N -0.50 -14.91 10.54 -203.74 -2.15 -17.06 15 16 C 0.01 0.24 12.23 130.66 1.60 1.83 15 17 S 0.17 3.79 23.22 -56.49 -1.31 2.47 15 18 C 0.02 0.90 7.28 83.58 0.61 1.51 15 19 H 0.26 14.60 8.31 -92.71 -0.77 13.83 15 20 H 0.03 1.61 8.11 -2.39 -0.02 1.59 15 21 H 0.08 2.86 8.14 -2.39 -0.02 2.84 15 22 H 0.07 2.57 7.87 -2.39 -0.02 2.55 15 23 H 0.10 2.59 8.08 -2.38 -0.02 2.57 15 24 H 0.07 2.02 7.30 -2.38 -0.02 2.00 15 25 H 0.17 5.12 8.06 -2.91 -0.02 5.10 15 26 H 0.23 3.09 8.06 -2.91 -0.02 3.07 15 27 H 0.06 2.51 7.38 -2.39 -0.02 2.49 15 28 H 0.04 1.95 8.14 -2.39 -0.02 1.93 15 Total: -1.00 -62.52 259.05 -0.88 -63.40 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 1.15 Total: 7.48 kcal Atomic # 6 Polarization: -27.81 SS G_CDS: 5.01 Total: -22.80 kcal Atomic # 7 Polarization: -87.56 SS G_CDS: -7.75 Total: -95.31 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.31 Total: 2.47 kcal Total: -62.52 -0.88 -63.40 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194629.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.563 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds