Wall clock time and date at job start Sun Mar 29 2020 22:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00168 * 2 1 4 4 H 1.48499 * 109.47059 * 269.99798 * 3 2 1 5 5 H 1.48500 * 109.46981 * 29.99627 * 3 2 1 6 6 H 1.48496 * 109.47148 * 149.99797 * 3 2 1 7 7 C 1.37884 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99632 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99886 * 0.02562 * 7 2 1 10 10 S 1.81394 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.81399 * 102.99894 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47445 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.52135 * 303.67162 * 12 11 10 14 14 C 1.54838 * 110.57940 * 66.45279 * 12 11 10 15 15 C 1.56194 * 103.68442 * 118.54895 * 14 12 11 16 16 H 1.08992 * 116.29011 * 163.13354 * 15 14 12 17 17 C 1.53359 * 104.07912 * 292.48116 * 15 14 12 18 18 C 1.33836 * 107.34215 * 70.73576 * 17 15 14 19 19 C 1.53364 * 108.70472 * 359.48116 * 18 17 15 20 20 H 1.09005 * 116.98495 * 160.46293 * 19 18 17 21 21 C 1.57257 * 99.79845 * 33.68745 * 19 18 17 22 22 H 0.96999 * 119.99860 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46755 * 59.99870 * 9 7 2 24 24 H 1.08998 * 109.46859 * 299.99636 * 9 7 2 25 25 H 1.09001 * 109.47190 * 299.99732 * 11 10 9 26 26 H 1.09004 * 109.47089 * 59.99865 * 11 10 9 27 27 H 1.08998 * 110.58156 * 237.10513 * 14 12 11 28 28 H 1.09009 * 110.57822 * 359.85288 * 14 12 11 29 29 H 1.07999 * 125.78799 * 250.08603 * 17 15 14 30 30 H 1.07995 * 125.50656 * 179.83048 * 18 17 15 31 31 H 1.09000 * 112.52344 * 194.49712 * 21 19 18 32 32 H 1.08999 * 112.52523 * 66.63506 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 16 2.4297 -3.8779 0.0005 11 6 1.3514 -5.3366 0.0013 12 6 2.2082 -6.6043 0.0008 13 1 2.8905 -6.6040 -0.8493 14 6 2.9937 -6.7309 1.3291 15 6 2.4647 -8.0651 1.9455 16 1 3.0710 -8.5048 2.7373 17 6 1.0036 -7.7599 2.2973 18 6 0.3287 -7.6592 1.1459 19 6 1.3044 -7.8780 -0.0169 20 1 0.8729 -8.1505 -0.9801 21 6 2.2757 -8.9245 0.6421 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5570 -0.8897 24 1 0.6240 -2.5567 0.8903 25 1 0.7226 -5.3232 0.8915 26 1 0.7219 -5.3236 -0.8885 27 1 4.0646 -6.7959 1.1363 28 1 2.7741 -5.8891 1.9858 29 1 0.6020 -7.6586 3.2947 30 1 -0.7272 -7.4520 1.0539 31 1 3.2034 -9.0434 0.0823 32 1 1.7891 -9.8798 0.8388 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600557022.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:22 Heat of formation + Delta-G solvation = -0.994376 kcal Electronic energy + Delta-G solvation = -12972.193444 eV Core-core repulsion = 10830.238284 eV Total energy + Delta-G solvation = -2141.955160 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 224.093 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.52402 -35.31603 -33.11903 -30.76204 -30.42012 -29.11904 -26.23661 -24.98569 -21.71029 -21.12778 -18.80785 -18.49206 -17.54376 -17.13407 -16.44278 -16.01182 -15.47233 -14.67929 -14.43219 -14.27368 -13.86466 -13.31393 -13.07512 -12.86002 -12.74830 -12.37027 -12.22326 -12.18003 -11.90655 -11.76476 -11.69508 -11.30161 -11.08805 -10.76839 -10.63446 -9.66520 -8.45259 -8.35421 -6.49267 1.03662 1.30355 1.38671 1.40300 1.53030 2.05167 2.35369 2.98843 3.56879 3.59800 3.69949 4.03973 4.10424 4.25016 4.42754 4.48238 4.55528 4.65342 4.71061 4.83806 4.90429 4.90794 5.01735 5.06236 5.15212 5.22519 5.31608 5.38575 5.54641 5.56917 5.86403 6.05523 6.58353 7.19017 8.76928 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.063057 B = 0.005533 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.935506 B = 5059.786297 C = 5184.904057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.979 3.021 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.062 0.938 9 C 0.093 3.907 10 S -0.316 6.316 11 C -0.062 4.062 12 C -0.067 4.067 13 H 0.081 0.919 14 C -0.116 4.116 15 C -0.076 4.076 16 H 0.114 0.886 17 C -0.178 4.178 18 C -0.178 4.178 19 C -0.066 4.066 20 H 0.113 0.887 21 C -0.108 4.108 22 H 0.271 0.729 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.134 0.866 30 H 0.125 0.875 31 H 0.085 0.915 32 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 -17.021 2.022 17.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.188 4.188 3 Si 0.802 3.198 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.576 4.576 8 H 0.080 0.920 9 C -0.055 4.055 10 S -0.089 6.089 11 C -0.210 4.210 12 C -0.087 4.087 13 H 0.100 0.900 14 C -0.154 4.154 15 C -0.094 4.094 16 H 0.132 0.868 17 C -0.195 4.195 18 C -0.196 4.196 19 C -0.087 4.087 20 H 0.131 0.869 21 C -0.146 4.146 22 H 0.080 0.920 23 H 0.028 0.972 24 H 0.027 0.973 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.152 0.848 30 H 0.143 0.857 31 H 0.103 0.897 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.943 -16.844 2.019 17.416 hybrid contribution -1.488 1.287 0.028 1.967 sum 2.455 -15.557 2.047 15.882 Atomic orbital electron populations 1.70068 1.07796 1.28616 1.50112 1.25969 0.95905 1.03213 0.93681 0.85234 0.78439 0.77254 0.78867 1.19257 1.19921 1.18909 1.21017 0.93422 0.90239 1.52907 0.91972 1.20696 0.94145 0.93182 0.97448 1.86322 1.21692 1.02926 1.97928 1.23436 0.99673 0.94245 1.03691 1.22108 0.96277 0.91153 0.99146 0.90037 1.22779 0.99456 0.97506 0.95612 1.22988 0.93977 0.94805 0.97627 0.86834 1.24832 0.95602 1.00988 0.98115 1.24693 0.98780 1.01232 0.94894 1.23016 0.94254 0.93662 0.97718 0.86905 1.24011 0.98983 0.97123 0.94440 0.92043 0.97155 0.97282 0.91162 0.91231 0.90812 0.92918 0.84802 0.85727 0.89669 0.89466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.89 13.29 21.45 0.28 -55.61 16 2 C 0.01 0.74 5.46 84.66 0.46 1.20 16 3 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -31.80 9.13 25.60 0.23 -31.56 16 8 H 0.06 3.65 7.71 -2.91 -0.02 3.63 16 9 C 0.09 5.18 5.70 71.24 0.41 5.59 16 10 S -0.32 -14.39 20.95 -56.49 -1.18 -15.57 16 11 C -0.06 -2.20 4.86 71.98 0.35 -1.85 16 12 C -0.07 -1.85 2.75 -9.06 -0.02 -1.87 16 13 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 14 C -0.12 -3.05 5.51 32.33 0.18 -2.87 16 15 C -0.08 -1.55 5.20 -8.06 -0.04 -1.60 16 16 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 17 C -0.18 -3.98 10.30 25.55 0.26 -3.72 16 18 C -0.18 -4.10 8.37 25.55 0.21 -3.89 16 19 C -0.07 -1.43 4.97 -8.06 -0.04 -1.47 16 20 H 0.11 2.13 8.14 -2.38 -0.02 2.11 16 21 C -0.11 -1.91 6.69 33.59 0.22 -1.69 16 22 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 23 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.07 2.55 6.84 -2.39 -0.02 2.54 16 26 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.05 1.67 7.38 -2.38 -0.02 1.66 16 29 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 30 H 0.12 2.76 8.06 -2.91 -0.02 2.74 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -64.16 273.66 4.42 -59.74 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: 1.07 Total: 8.64 kcal Atomic # 6 Polarization: -45.96 SS G_CDS: 2.22 Total: -43.73 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: 0.28 Total: -55.61 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Atomic # 16 Polarization: -14.39 SS G_CDS: -1.18 Total: -15.57 kcal Total: -64.16 4.42 -59.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600557022.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.741 kcal (2) G-P(sol) polarization free energy of solvation -64.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds