Wall clock time and date at job start Sun Mar 29 2020 22:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47044 * 355.73153 * 3 2 1 5 5 C 1.37100 * 119.99671 * 264.47523 * 4 3 2 6 6 H 1.08002 * 120.00100 * 142.68561 * 5 4 3 7 7 C 1.38956 * 120.00092 * 322.68127 * 5 4 3 8 8 N 1.31404 * 120.00156 * 158.73621 * 7 5 4 9 9 Si 1.86802 * 119.99746 * 338.74260 * 7 5 4 10 10 H 1.48501 * 109.47266 * 95.74121 * 9 7 5 11 11 H 1.48502 * 109.47077 * 215.74123 * 9 7 5 12 12 H 1.48503 * 109.47057 * 335.73923 * 9 7 5 13 13 C 1.34773 * 120.00674 * 84.75079 * 4 3 2 14 14 O 1.21290 * 120.00422 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99645 * 359.97438 * 13 4 3 16 16 H 1.09004 * 112.84758 * 48.80406 * 15 13 4 17 17 C 1.53782 * 113.61617 * 180.02562 * 15 13 4 18 18 C 1.53772 * 87.08133 * 139.98039 * 17 15 13 19 19 H 1.09000 * 113.61421 * 89.12166 * 18 17 15 20 20 O 1.42904 * 113.61532 * 220.01701 * 18 17 15 21 21 C 1.53775 * 87.08583 * 334.56900 * 18 17 15 22 22 H 1.08995 * 109.46973 * 235.72776 * 3 2 1 23 23 H 1.09000 * 109.46702 * 115.72467 * 3 2 1 24 24 H 0.96997 * 120.00193 * 180.02562 * 8 7 5 25 25 H 1.08997 * 113.61306 * 254.53661 * 17 15 13 26 26 H 1.09003 * 113.61031 * 25.43500 * 17 15 13 27 27 H 0.96698 * 113.99985 * 180.02562 * 20 18 17 28 28 H 1.09000 * 113.61337 * 270.88679 * 21 18 17 29 29 H 1.08995 * 113.61764 * 139.97756 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3765 0.1028 5 6 3.4334 -1.8948 1.3266 6 1 3.2152 -2.9278 1.5541 7 6 4.0553 -1.0911 2.2744 8 7 4.0069 -1.4176 3.5463 9 14 4.9598 0.4535 1.7403 10 1 4.0596 1.6266 1.8770 11 1 6.1578 0.6466 2.5964 12 1 5.3812 0.3153 0.3231 13 6 3.2213 -2.1321 -1.0062 14 8 3.6256 -3.2725 -0.9210 15 6 2.8567 -1.5605 -2.3522 16 1 3.3009 -0.5812 -2.5304 17 6 3.0540 -2.5478 -3.5146 18 6 1.7405 -2.0010 -4.0982 19 1 1.8786 -1.1420 -4.7547 20 8 0.9047 -3.0093 -4.6700 21 6 1.3512 -1.6210 -2.6599 22 1 2.9710 0.5795 0.8492 23 1 2.9711 0.4469 -0.9258 24 1 4.4406 -0.8564 4.2079 25 1 3.9283 -2.3307 -4.1282 26 1 2.9960 -3.5938 -3.2137 27 1 0.0772 -2.6715 -5.0391 28 1 0.8278 -2.4136 -2.1253 29 1 0.8509 -0.6556 -2.5835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602086728.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:24 Heat of formation + Delta-G solvation = -15.664553 kcal Electronic energy + Delta-G solvation = -15524.713437 eV Core-core repulsion = 12835.828916 eV Total energy + Delta-G solvation = -2688.884521 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00916 -37.89042 -36.26281 -34.89531 -34.44520 -32.19592 -27.83100 -26.67838 -25.53318 -23.95463 -20.27222 -18.97926 -18.40232 -17.50369 -16.70416 -16.26350 -15.66475 -15.23124 -14.20855 -14.06350 -13.72004 -13.26304 -13.06811 -12.56229 -12.43892 -12.31260 -12.12890 -11.84776 -11.59116 -11.29896 -10.97048 -10.78668 -10.50672 -10.37065 -10.04631 -9.76864 -9.28119 -8.67715 -8.07786 -6.51716 -4.13697 2.86499 3.00396 3.06802 3.11031 3.22941 3.47381 3.99400 4.12035 4.40196 4.52113 4.65985 4.77907 4.93721 4.95677 5.04332 5.29623 5.47600 5.57709 5.76571 5.81301 5.93852 6.15523 6.23457 6.53474 7.35827 7.68249 7.94246 8.11394 8.31205 8.78747 9.12214 9.53271 10.60053 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.034908 B = 0.009614 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.909830 B = 2911.625691 C = 3196.969524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.207 3.793 3 C 0.179 3.821 4 N -0.463 5.463 5 C -0.324 4.324 6 H 0.109 0.891 7 C 0.062 3.938 8 N -0.855 5.855 9 Si 0.862 3.138 10 H -0.270 1.270 11 H -0.280 1.280 12 H -0.256 1.256 13 C 0.489 3.511 14 O -0.543 6.543 15 C -0.141 4.141 16 H 0.108 0.892 17 C -0.102 4.102 18 C 0.075 3.925 19 H 0.082 0.918 20 O -0.558 6.558 21 C -0.152 4.152 22 H 0.113 0.887 23 H 0.108 0.892 24 H 0.277 0.723 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.374 0.626 28 H 0.092 0.908 29 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.320 6.477 -12.349 14.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.112 4.112 3 C 0.052 3.948 4 N -0.185 5.185 5 C -0.451 4.451 6 H 0.127 0.873 7 C -0.145 4.145 8 N -0.490 5.490 9 Si 0.688 3.312 10 H -0.197 1.197 11 H -0.206 1.206 12 H -0.180 1.180 13 C 0.277 3.723 14 O -0.422 6.422 15 C -0.162 4.162 16 H 0.126 0.874 17 C -0.139 4.139 18 C 0.016 3.984 19 H 0.099 0.901 20 O -0.363 6.363 21 C -0.190 4.190 22 H 0.130 0.870 23 H 0.126 0.874 24 H 0.087 0.913 25 H 0.093 0.907 26 H 0.122 0.878 27 H 0.220 0.780 28 H 0.110 0.890 29 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.220 5.501 -11.877 13.276 hybrid contribution 0.477 1.428 -0.020 1.506 sum -1.744 6.930 -11.897 13.878 Atomic orbital electron populations 1.81051 1.13101 1.08184 1.09622 1.30007 0.95791 0.93023 0.92363 1.19540 0.81202 0.89413 1.04616 1.43620 1.57438 1.09992 1.07497 1.19083 1.38968 0.99837 0.87232 0.87314 1.25381 0.96060 0.98338 0.94752 1.69735 1.39965 1.39182 1.00156 0.87170 0.80843 0.82615 0.80567 1.19709 1.20582 1.17957 1.19985 0.80894 0.87122 0.84301 1.90584 1.47572 1.18061 1.85943 1.22560 0.97892 1.00816 0.94960 0.87386 1.22881 0.95236 1.01337 0.94470 1.23396 0.92318 0.90820 0.91842 0.90057 1.86567 1.34330 1.35986 1.79397 1.23609 0.95170 1.02540 0.97713 0.87011 0.87417 0.91279 0.90675 0.87783 0.77987 0.88962 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -8.67 18.54 42.15 0.78 -7.89 15 2 C 0.21 3.85 13.79 -20.76 -0.29 3.57 15 3 C 0.18 3.22 4.28 -6.83 -0.03 3.19 15 4 N -0.46 -10.37 2.16 -117.93 -0.25 -10.63 15 5 C -0.32 -8.69 9.37 -14.93 -0.14 -8.83 15 6 H 0.11 3.34 7.91 -52.49 -0.42 2.93 15 7 C 0.06 1.60 5.29 -17.47 -0.09 1.50 15 8 N -0.86 -23.64 13.96 55.50 0.77 -22.86 15 9 Si 0.86 18.09 24.94 -169.99 -4.24 13.85 15 10 H -0.27 -5.14 6.70 56.52 0.38 -4.76 15 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 15 12 H -0.26 -5.06 7.11 56.52 0.40 -4.66 15 13 C 0.49 10.64 7.10 -10.99 -0.08 10.56 15 14 O -0.54 -14.05 15.77 5.55 0.09 -13.97 15 15 C -0.14 -2.23 3.00 -90.96 -0.27 -2.51 15 16 H 0.11 1.36 6.98 -51.93 -0.36 1.00 15 17 C -0.10 -1.53 7.24 -25.92 -0.19 -1.71 15 18 C 0.08 0.95 5.21 -25.93 -0.14 0.82 15 19 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 20 O -0.56 -7.31 13.67 -35.23 -0.48 -7.79 15 21 C -0.15 -2.25 6.27 -25.92 -0.16 -2.41 15 22 H 0.11 2.07 3.46 -51.93 -0.18 1.89 15 23 H 0.11 1.43 6.44 -51.93 -0.33 1.10 15 24 H 0.28 7.03 8.31 -40.82 -0.34 6.69 15 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 26 H 0.10 1.87 7.43 -51.93 -0.39 1.48 15 27 H 0.37 3.09 9.12 45.56 0.42 3.50 15 28 H 0.09 1.63 8.09 -51.93 -0.42 1.21 15 29 H 0.07 0.93 7.48 -51.93 -0.39 0.55 15 LS Contribution 252.99 15.07 3.81 3.81 Total: -1.00 -32.09 252.99 -2.98 -35.07 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -2.07 Total: 6.22 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.38 Total: 4.18 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 1.30 Total: -41.38 kcal Atomic # 8 Polarization: -21.37 SS G_CDS: -0.39 Total: -21.76 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -4.24 Total: 13.85 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -32.09 -2.98 -35.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086728.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.404 kcal (2) G-P(sol) polarization free energy of solvation -32.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds