Wall clock time and date at job start Sun Mar 29 2020 22:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47044 * 355.73153 * 3 2 1 5 5 C 1.37100 * 119.99671 * 264.47523 * 4 3 2 6 6 H 1.08002 * 120.00100 * 142.68561 * 5 4 3 7 7 C 1.38956 * 120.00092 * 322.68127 * 5 4 3 8 8 N 1.31404 * 120.00156 * 158.73621 * 7 5 4 9 9 Si 1.86802 * 119.99746 * 338.74260 * 7 5 4 10 10 H 1.48501 * 109.47266 * 95.74121 * 9 7 5 11 11 H 1.48502 * 109.47077 * 215.74123 * 9 7 5 12 12 H 1.48503 * 109.47057 * 335.73923 * 9 7 5 13 13 C 1.34773 * 120.00674 * 84.75079 * 4 3 2 14 14 O 1.21290 * 120.00422 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99645 * 359.97438 * 13 4 3 16 16 H 1.09004 * 112.84758 * 48.80406 * 15 13 4 17 17 C 1.53782 * 113.61617 * 180.02562 * 15 13 4 18 18 C 1.53772 * 87.08133 * 139.98039 * 17 15 13 19 19 H 1.09000 * 113.61421 * 89.12166 * 18 17 15 20 20 O 1.42904 * 113.61532 * 220.01701 * 18 17 15 21 21 C 1.53775 * 87.08583 * 334.56900 * 18 17 15 22 22 H 1.08995 * 109.46973 * 235.72776 * 3 2 1 23 23 H 1.09000 * 109.46702 * 115.72467 * 3 2 1 24 24 H 0.96997 * 120.00193 * 180.02562 * 8 7 5 25 25 H 1.08997 * 113.61306 * 254.53661 * 17 15 13 26 26 H 1.09003 * 113.61031 * 25.43500 * 17 15 13 27 27 H 0.96698 * 113.99985 * 180.02562 * 20 18 17 28 28 H 1.09000 * 113.61337 * 270.88679 * 21 18 17 29 29 H 1.08995 * 113.61764 * 139.97756 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3765 0.1028 5 6 3.4334 -1.8948 1.3266 6 1 3.2152 -2.9278 1.5541 7 6 4.0553 -1.0911 2.2744 8 7 4.0069 -1.4176 3.5463 9 14 4.9598 0.4535 1.7403 10 1 4.0596 1.6266 1.8770 11 1 6.1578 0.6466 2.5964 12 1 5.3812 0.3153 0.3231 13 6 3.2213 -2.1321 -1.0062 14 8 3.6256 -3.2725 -0.9210 15 6 2.8567 -1.5605 -2.3522 16 1 3.3009 -0.5812 -2.5304 17 6 3.0540 -2.5478 -3.5146 18 6 1.7405 -2.0010 -4.0982 19 1 1.8786 -1.1420 -4.7547 20 8 0.9047 -3.0093 -4.6700 21 6 1.3512 -1.6210 -2.6599 22 1 2.9710 0.5795 0.8492 23 1 2.9711 0.4469 -0.9258 24 1 4.4406 -0.8564 4.2079 25 1 3.9283 -2.3307 -4.1282 26 1 2.9960 -3.5938 -3.2137 27 1 0.0772 -2.6715 -5.0391 28 1 0.8278 -2.4136 -2.1253 29 1 0.8509 -0.6556 -2.5835 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602086728.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:23 Heat of formation + Delta-G solvation = -42.257220 kcal Electronic energy + Delta-G solvation = -15525.866581 eV Core-core repulsion = 12835.828916 eV Total energy + Delta-G solvation = -2690.037666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.45131 -39.23636 -37.86396 -36.47623 -35.70936 -34.13946 -29.43658 -28.26131 -26.68946 -25.52417 -21.63236 -20.50589 -19.93270 -18.81870 -18.31523 -17.67872 -17.21155 -16.53428 -15.71626 -15.56194 -15.23842 -14.70343 -14.67920 -14.25358 -13.89946 -13.71950 -13.49271 -13.31372 -13.10041 -12.67446 -12.51318 -12.09497 -11.97923 -11.74718 -11.45949 -11.10195 -10.82715 -10.37177 -9.97980 -8.49363 -6.20101 1.25479 1.39682 1.47214 1.54276 1.74930 1.85118 2.22938 2.70392 2.83493 3.16143 3.39295 3.49253 3.67951 3.85362 3.96653 4.00009 4.16253 4.33900 4.59478 4.69392 4.78498 4.99224 5.11831 5.36475 5.51217 6.02329 6.43160 6.51589 6.87940 6.97030 7.17506 7.74382 8.67828 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.034908 B = 0.009614 C = 0.008756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.909830 B = 2911.625691 C = 3196.969524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C 0.219 3.781 3 C 0.177 3.823 4 N -0.472 5.472 5 C -0.347 4.347 6 H 0.037 0.963 7 C 0.009 3.991 8 N -0.911 5.911 9 Si 0.936 3.064 10 H -0.225 1.225 11 H -0.288 1.288 12 H -0.226 1.226 13 C 0.479 3.521 14 O -0.602 6.602 15 C -0.133 4.133 16 H 0.163 0.837 17 C -0.114 4.114 18 C 0.096 3.904 19 H 0.133 0.867 20 O -0.582 6.582 21 C -0.152 4.152 22 H 0.114 0.886 23 H 0.173 0.827 24 H 0.282 0.718 25 H 0.103 0.897 26 H 0.059 0.941 27 H 0.395 0.605 28 H 0.049 0.951 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.845 10.495 -15.322 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.100 4.100 3 C 0.051 3.949 4 N -0.194 5.194 5 C -0.475 4.475 6 H 0.055 0.945 7 C -0.194 4.194 8 N -0.548 5.548 9 Si 0.755 3.245 10 H -0.150 1.150 11 H -0.215 1.215 12 H -0.148 1.148 13 C 0.270 3.730 14 O -0.484 6.484 15 C -0.154 4.154 16 H 0.180 0.820 17 C -0.151 4.151 18 C 0.038 3.962 19 H 0.151 0.849 20 O -0.390 6.390 21 C -0.191 4.191 22 H 0.131 0.869 23 H 0.190 0.810 24 H 0.092 0.908 25 H 0.122 0.878 26 H 0.077 0.923 27 H 0.246 0.754 28 H 0.068 0.932 29 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.803 9.539 -14.875 17.763 hybrid contribution 0.254 0.000 0.968 1.001 sum -1.549 9.539 -13.907 16.936 Atomic orbital electron populations 1.81073 1.13872 1.08670 1.10570 1.30099 0.95875 0.92381 0.91623 1.19942 0.80497 0.86574 1.07892 1.43651 1.57741 1.11975 1.06036 1.18596 1.41288 0.97704 0.89871 0.94491 1.26360 0.95857 1.03181 0.93964 1.69883 1.41109 1.41838 1.01953 0.86029 0.79033 0.78070 0.81326 1.14971 1.21511 1.14800 1.21188 0.79137 0.86342 0.86333 1.90552 1.49858 1.20856 1.87156 1.22752 0.98953 1.03011 0.90703 0.81986 1.22913 0.98368 0.98823 0.95033 1.23406 0.90099 0.91531 0.91190 0.84924 1.86522 1.35820 1.37199 1.79460 1.23564 0.94020 1.02259 0.99236 0.86889 0.81006 0.90819 0.87820 0.92270 0.75442 0.93249 0.89007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -17.37 18.54 20.01 0.37 -17.00 15 2 C 0.22 7.56 13.79 89.44 1.23 8.80 15 3 C 0.18 5.65 4.28 84.57 0.36 6.01 15 4 N -0.47 -20.94 2.16 -645.42 -1.39 -22.33 15 5 C -0.35 -19.52 9.37 84.04 0.79 -18.73 15 6 H 0.04 2.53 7.91 -2.91 -0.02 2.51 15 7 C 0.01 0.47 5.29 84.93 0.45 0.92 15 8 N -0.91 -52.52 13.96 21.66 0.30 -52.22 15 9 Si 0.94 35.32 24.94 68.60 1.71 37.03 15 10 H -0.23 -6.97 6.70 99.48 0.67 -6.30 15 11 H -0.29 -11.31 7.11 99.48 0.71 -10.60 15 12 H -0.23 -7.44 7.11 99.48 0.71 -6.73 15 13 C 0.48 20.86 7.10 87.66 0.62 21.49 15 14 O -0.60 -32.97 15.77 -3.06 -0.05 -33.02 15 15 C -0.13 -3.79 3.00 -11.01 -0.03 -3.82 15 16 H 0.16 2.88 6.98 -2.39 -0.02 2.86 15 17 C -0.11 -3.15 7.24 31.12 0.23 -2.92 15 18 C 0.10 2.05 5.21 31.12 0.16 2.21 15 19 H 0.13 1.61 8.14 -2.39 -0.02 1.59 15 20 O -0.58 -13.77 13.67 -148.98 -2.04 -15.81 15 21 C -0.15 -4.08 6.27 31.12 0.20 -3.88 15 22 H 0.11 3.65 3.46 -2.39 -0.01 3.64 15 23 H 0.17 3.28 6.44 -2.39 -0.02 3.26 15 24 H 0.28 14.78 8.31 -92.71 -0.77 14.01 15 25 H 0.10 2.25 8.14 -2.39 -0.02 2.23 15 26 H 0.06 2.18 7.43 -2.39 -0.02 2.17 15 27 H 0.40 5.28 9.12 -74.06 -0.68 4.60 15 28 H 0.05 1.75 8.09 -2.39 -0.02 1.73 15 29 H 0.09 2.05 7.48 -2.39 -0.02 2.03 15 Total: -1.00 -79.68 252.99 3.39 -76.30 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.48 Total: 16.99 kcal Atomic # 6 Polarization: 6.06 SS G_CDS: 4.00 Total: 10.06 kcal Atomic # 7 Polarization: -90.83 SS G_CDS: -0.72 Total: -91.55 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -2.08 Total: -48.83 kcal Atomic # 14 Polarization: 35.32 SS G_CDS: 1.71 Total: 37.03 kcal Total: -79.68 3.39 -76.30 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086728.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.040 kcal (2) G-P(sol) polarization free energy of solvation -79.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds