Wall clock time and date at job start Sun Mar 29 2020 21:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 109.46955 * 2 1 4 4 C 1.52998 * 109.47181 * 119.99824 * 2 1 3 5 5 C 1.50696 * 109.47107 * 295.00082 * 4 2 1 6 6 H 1.07997 * 120.00113 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99572 * 180.27068 * 5 4 2 8 8 N 1.31512 * 120.00288 * 359.72832 * 7 5 4 9 9 Si 1.86807 * 119.99806 * 179.72304 * 7 5 4 10 10 H 1.48504 * 109.46918 * 90.00359 * 9 7 5 11 11 H 1.48496 * 109.47358 * 210.00345 * 9 7 5 12 12 H 1.48502 * 109.47124 * 330.00678 * 9 7 5 13 13 C 1.53001 * 109.47108 * 240.00236 * 2 1 3 14 14 N 1.46897 * 109.47360 * 65.33284 * 13 2 1 15 15 C 1.50652 * 110.99935 * 183.79651 * 14 13 2 16 16 C 1.57338 * 100.34749 * 298.23674 * 15 14 13 17 17 C 1.54836 * 103.38754 * 326.41711 * 16 15 14 18 18 C 1.50648 * 111.00055 * 75.70252 * 14 13 2 19 19 C 1.55848 * 101.02813 * 170.23978 * 18 14 13 20 20 C 1.54827 * 103.51850 * 327.00433 * 19 18 14 21 21 H 1.08998 * 109.46958 * 185.01294 * 1 2 3 22 22 H 1.08990 * 109.46693 * 305.01484 * 1 2 3 23 23 H 1.09001 * 109.46845 * 65.01592 * 1 2 3 24 24 H 1.08994 * 109.46877 * 174.99625 * 4 2 1 25 25 H 1.09004 * 109.46521 * 55.00248 * 4 2 1 26 26 H 0.97003 * 119.99820 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46998 * 185.33671 * 13 2 1 28 28 H 1.09000 * 109.47001 * 305.33407 * 13 2 1 29 29 H 1.08994 * 115.88046 * 63.35186 * 15 14 13 30 30 H 1.09007 * 110.33411 * 208.11761 * 16 15 14 31 31 H 1.08997 * 111.15097 * 85.11096 * 16 15 14 32 32 H 1.08991 * 110.61709 * 241.89240 * 17 16 15 33 33 H 1.08998 * 110.74601 * 118.97303 * 17 16 15 34 34 H 1.08999 * 115.87794 * 295.93801 * 18 14 13 35 35 H 1.09000 * 110.61605 * 85.51992 * 19 18 14 36 36 H 1.09003 * 110.60849 * 208.49583 * 19 18 14 37 37 H 1.09004 * 110.61557 * 241.49241 * 20 19 18 38 38 H 1.09007 * 110.74920 * 118.57498 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6414 0.0571 2.4765 6 1 1.0808 0.9746 2.3756 7 6 1.9978 -0.3990 3.7279 8 7 2.6809 -1.5161 3.8508 9 14 1.5103 0.5698 5.2489 10 1 0.1847 0.1033 5.7291 11 1 2.5238 0.3620 6.3142 12 1 1.4346 2.0142 4.9126 13 6 2.0401 -0.7212 -1.2493 14 7 1.6584 0.0416 -2.4452 15 6 2.0634 -0.6851 -3.7012 16 6 3.6248 -0.7283 -3.5117 17 6 3.9335 0.5991 -2.7767 18 6 2.5310 1.2584 -2.6108 19 6 2.1157 1.7314 -4.0365 20 6 1.7978 0.4098 -4.7779 21 1 -0.3633 -1.0237 0.0898 22 1 -0.3632 0.5896 0.8416 23 1 -0.3633 0.4341 -0.9315 24 1 3.1263 -0.7994 1.2055 25 1 1.6054 -1.7198 1.2951 26 1 2.9319 -1.8367 4.7312 27 1 3.1258 -0.8047 -1.2028 28 1 1.6008 -1.7176 -1.2984 29 1 1.5840 -1.6496 -3.8684 30 1 4.1233 -0.7553 -4.4807 31 1 3.9237 -1.5821 -2.9037 32 1 4.5850 1.2300 -3.3812 33 1 4.3841 0.4056 -1.8032 34 1 2.4541 2.0095 -1.8247 35 1 1.2312 2.3664 -3.9877 36 1 2.9391 2.2553 -4.5220 37 1 2.4636 0.2787 -5.6310 38 1 0.7562 0.3879 -5.0987 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602433678.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:58 Heat of formation + Delta-G solvation = 1.222864 kcal Electronic energy + Delta-G solvation = -15967.509759 eV Core-core repulsion = 13616.449631 eV Total energy + Delta-G solvation = -2351.060128 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.53557 -35.38612 -32.45513 -30.79384 -29.76607 -29.17081 -26.71590 -25.17098 -22.74540 -22.07221 -20.03781 -19.56762 -18.28083 -16.46810 -15.92612 -15.58033 -14.96533 -14.43961 -13.60499 -13.13725 -12.79203 -12.51950 -12.30744 -11.95863 -11.75814 -11.50936 -11.34559 -11.23138 -11.10427 -10.86493 -10.79184 -10.65814 -10.55675 -10.24313 -10.14515 -9.89373 -9.56369 -9.06356 -8.90014 -8.29500 -8.15980 -5.94433 -3.95224 3.35043 3.41115 3.44599 4.09324 4.50658 4.66877 4.79793 5.00706 5.19246 5.32350 5.39949 5.41447 5.44001 5.49858 5.57116 5.81259 5.84254 5.93896 5.95674 6.02526 6.09899 6.25362 6.28999 6.33858 6.41213 6.48430 6.63009 6.74639 6.99433 7.10629 7.26223 7.29033 7.49686 7.73896 7.90659 8.06497 8.51216 9.11373 9.67993 11.17167 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049366 B = 0.006134 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.059143 B = 4563.683226 C = 4665.793273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.076 4.076 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.511 4.511 6 H 0.055 0.945 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.038 3.962 14 N -0.489 5.489 15 C 0.040 3.960 16 C -0.151 4.151 17 C -0.153 4.153 18 C 0.047 3.953 19 C -0.114 4.114 20 C -0.111 4.111 21 H 0.038 0.962 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.011 0.989 25 H 0.015 0.985 26 H 0.259 0.741 27 H 0.042 0.958 28 H 0.064 0.936 29 H 0.107 0.893 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 3.424 -15.959 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.095 4.095 3 H 0.070 0.930 4 C -0.010 4.010 5 C -0.549 4.549 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.090 4.090 14 N -0.212 5.212 15 C -0.069 4.069 16 C -0.190 4.190 17 C -0.191 4.191 18 C -0.062 4.062 19 C -0.152 4.152 20 C -0.149 4.149 21 H 0.057 0.943 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.125 0.875 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.125 3.413 -15.740 16.106 hybrid contribution 0.803 0.143 1.001 1.291 sum 0.678 3.556 -14.739 15.177 Atomic orbital electron populations 1.21583 0.95966 1.00554 0.99888 1.21127 0.95764 0.98871 0.93740 0.92954 1.19129 0.95796 0.95513 0.90566 1.21247 1.34335 1.08287 0.91023 0.92629 1.25021 0.95359 0.95124 0.99064 1.69969 1.39144 1.21366 1.23306 0.86641 0.78196 0.80464 0.82983 1.20720 1.21339 1.19933 1.22546 0.98722 0.97275 0.90432 1.67656 1.47697 1.04546 1.01264 1.24711 0.92905 0.97223 0.92018 1.23492 0.97357 0.97901 1.00236 1.23219 0.98541 0.96665 1.00716 1.24391 0.90244 0.94614 0.96957 1.22568 1.00798 0.96945 0.94845 1.22518 1.01209 0.94607 0.96551 0.94252 0.93122 0.93816 0.97069 0.96707 0.93151 0.93994 0.91738 0.87457 0.91823 0.91472 0.91662 0.91025 0.87077 0.91381 0.91892 0.91951 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 8.87 37.16 0.33 -2.16 16 2 C -0.08 -1.61 2.40 -90.62 -0.22 -1.83 16 3 H 0.05 1.13 7.11 -51.93 -0.37 0.76 16 4 C 0.03 0.72 4.45 -27.89 -0.12 0.60 16 5 C -0.51 -14.57 8.47 -34.44 -0.29 -14.86 16 6 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 9 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.04 0.69 3.84 -3.83 -0.01 0.67 16 14 N -0.49 -7.57 4.96 -204.65 -1.01 -8.58 16 15 C 0.04 0.51 5.01 -61.71 -0.31 0.21 16 16 C -0.15 -1.87 5.69 -23.40 -0.13 -2.01 16 17 C -0.15 -2.01 5.64 -24.24 -0.14 -2.15 16 18 C 0.05 0.65 4.54 -62.56 -0.28 0.37 16 19 C -0.11 -1.31 6.45 -24.25 -0.16 -1.46 16 20 C -0.11 -1.22 6.46 -24.24 -0.16 -1.38 16 21 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.05 1.08 7.10 -51.93 -0.37 0.71 16 23 H 0.04 0.81 7.63 -51.93 -0.40 0.41 16 24 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 25 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.04 0.77 4.87 -51.93 -0.25 0.51 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 30 H 0.06 0.69 7.89 -51.93 -0.41 0.28 16 31 H 0.07 0.89 7.45 -51.93 -0.39 0.50 16 32 H 0.06 0.75 7.85 -51.93 -0.41 0.35 16 33 H 0.07 1.06 7.07 -51.93 -0.37 0.70 16 34 H 0.11 1.65 7.39 -51.93 -0.38 1.26 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.64 7.85 -51.93 -0.41 0.23 16 37 H 0.06 0.59 7.89 -51.93 -0.41 0.18 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 288.84 15.07 4.35 4.35 Total: -1.00 -29.85 288.84 -9.16 -39.01 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -6.62 Total: -2.62 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: -1.59 Total: -22.50 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.28 Total: -35.22 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.85 -9.16 -39.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602433678.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.233 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds