Wall clock time and date at job start Sun Mar 29 2020 21:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47239 * 89.99935 * 9 7 5 11 11 H 1.48495 * 109.47323 * 209.99675 * 9 7 5 12 12 H 1.48505 * 109.47112 * 330.00112 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.64096 * 324.99886 * 15 14 13 17 17 C 1.53030 * 109.64250 * 85.41408 * 15 14 13 18 18 C 1.50160 * 110.09628 * 168.90314 * 17 15 14 19 19 C 1.29446 * 124.14591 * 343.29020 * 18 17 15 20 20 C 1.50066 * 124.07729 * 0.23624 * 19 18 17 21 21 C 1.53019 * 110.14860 * 342.86857 * 20 19 18 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 26 26 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 27 27 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 30 30 H 1.00892 * 111.00581 * 56.04080 * 14 13 2 31 31 H 1.08994 * 109.35949 * 289.33219 * 17 15 14 32 32 H 1.09003 * 109.35313 * 48.91503 * 17 15 14 33 33 H 1.07998 * 117.89328 * 163.03387 * 18 17 15 34 34 H 1.08002 * 117.96047 * 180.25797 * 19 18 17 35 35 H 1.09005 * 109.36041 * 222.66458 * 20 19 18 36 36 H 1.09002 * 109.25099 * 103.01040 * 20 19 18 37 37 H 1.09009 * 109.64232 * 289.75524 * 21 20 19 38 38 H 1.09003 * 109.82120 * 169.22323 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.1723 0.0954 5.7237 11 1 2.5090 0.3536 6.3181 12 1 1.4245 2.0086 4.9162 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 1 3.0898 -1.0987 -3.4768 17 6 1.1116 -1.6859 -4.1038 18 6 1.4428 -2.1799 -5.4827 19 6 2.2323 -1.5658 -6.3043 20 6 2.9321 -0.2754 -5.9922 21 6 2.2708 0.4059 -4.7923 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 2.9235 -1.8416 4.7319 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 1.9882 0.9872 -2.3967 31 1 1.1351 -2.5196 -3.4021 32 1 0.1130 -1.2492 -4.1096 33 1 0.9969 -3.1084 -5.8074 34 1 2.3974 -2.0094 -7.2751 35 1 2.8766 0.3844 -6.8581 36 1 3.9773 -0.4803 -5.7606 37 1 1.2864 0.7768 -5.0781 38 1 2.8899 1.2355 -4.4508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602553909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:11 Heat of formation + Delta-G solvation = -16.861013 kcal Electronic energy + Delta-G solvation = -15186.607253 eV Core-core repulsion = 12834.762949 eV Total energy + Delta-G solvation = -2351.844303 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.88271 -36.20202 -33.62798 -31.92291 -30.83744 -28.87222 -26.70201 -25.03958 -23.30864 -22.28999 -21.21501 -19.03134 -17.82905 -16.28904 -16.23812 -15.20764 -14.62093 -14.33694 -14.17036 -13.51908 -13.33229 -12.96790 -12.61158 -12.40826 -12.25232 -12.12337 -11.56686 -11.38768 -10.99455 -10.81528 -10.69965 -10.61609 -10.36967 -10.24245 -10.11513 -9.66282 -9.10107 -9.03241 -8.91394 -8.30549 -8.07320 -5.95324 -3.96355 2.23403 3.34666 3.40827 3.44180 4.33028 4.50999 4.66398 4.76488 5.06276 5.26644 5.29220 5.40491 5.50621 5.52810 5.61892 5.71574 5.79389 5.92480 5.94599 6.03562 6.11784 6.20101 6.28502 6.46983 6.59964 6.60922 6.73249 6.89436 7.06409 7.21910 7.24222 7.44195 7.70197 7.74319 7.88837 8.05211 8.49399 9.10122 9.66962 11.16268 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.064091 B = 0.004564 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.776188 B = 6133.548412 C = 6190.478833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.685 5.685 15 C 0.086 3.914 16 H 0.042 0.958 17 C -0.082 4.082 18 C -0.146 4.146 19 C -0.167 4.167 20 C -0.087 4.087 21 C -0.120 4.120 22 H 0.039 0.961 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.023 0.977 29 H 0.065 0.935 30 H 0.338 0.662 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.847 1.426 -18.023 18.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 H 0.071 0.929 4 C -0.011 4.011 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.315 5.315 15 C -0.024 4.024 16 H 0.060 0.940 17 C -0.119 4.119 18 C -0.165 4.165 19 C -0.185 4.185 20 C -0.125 4.125 21 C -0.158 4.158 22 H 0.058 0.942 23 H 0.072 0.928 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.156 0.844 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.394 1.029 -17.916 17.999 hybrid contribution 0.768 0.460 0.936 1.295 sum -0.626 1.488 -16.979 17.056 Atomic orbital electron populations 1.21582 0.95744 1.00520 1.00098 1.21200 0.95991 0.98876 0.94081 0.92893 1.19124 0.95887 0.95579 0.90484 1.21246 1.34478 1.08298 0.91009 0.92574 1.25020 0.95341 0.95116 0.99088 1.69974 1.39143 1.21298 1.23321 0.86631 0.78213 0.80437 0.82945 1.20718 1.21334 1.19912 1.22189 0.97001 0.97753 0.89489 1.60549 1.64123 1.05573 1.01299 1.21525 0.96149 0.94679 0.90013 0.93981 1.20480 1.00009 0.98200 0.93246 1.22170 0.98812 0.99446 0.96040 1.21998 0.99637 0.97583 0.99321 1.20411 0.99221 0.94777 0.98075 1.21781 1.01423 0.97580 0.95038 0.94216 0.92846 0.93933 0.96586 0.96970 0.93129 0.95880 0.91627 0.84434 0.91160 0.89930 0.88107 0.88291 0.91180 0.91152 0.91049 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.71 2.48 -90.62 -0.22 -1.94 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.70 4.45 -27.89 -0.12 0.57 16 5 C -0.51 -14.51 8.41 -34.44 -0.29 -14.80 16 6 H 0.06 1.55 7.06 -52.48 -0.37 1.18 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.14 4.88 -3.82 -0.02 1.12 16 14 N -0.68 -10.07 5.77 -106.49 -0.61 -10.68 16 15 C 0.09 1.11 2.53 -67.49 -0.17 0.94 16 16 H 0.04 0.58 7.79 -51.93 -0.40 0.18 16 17 C -0.08 -1.01 5.59 -28.13 -0.16 -1.17 16 18 C -0.15 -1.58 9.80 -35.86 -0.35 -1.93 16 19 C -0.17 -1.67 9.80 -35.90 -0.35 -2.02 16 20 C -0.09 -0.83 6.12 -28.18 -0.17 -1.00 16 21 C -0.12 -1.28 5.37 -26.52 -0.14 -1.42 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 24 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 29 H 0.07 1.19 7.71 -51.93 -0.40 0.79 16 30 H 0.34 4.70 8.28 -39.30 -0.33 4.37 16 31 H 0.07 0.92 7.79 -51.93 -0.40 0.52 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.10 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.78 8.13 -51.92 -0.42 0.35 16 38 H 0.06 0.64 7.99 -51.93 -0.42 0.22 16 LS Contribution 302.62 15.07 4.56 4.56 Total: -1.00 -29.52 302.62 -8.97 -38.50 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.86 Total: -0.45 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -1.77 Total: -22.25 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.12 Total: -37.21 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.52 -8.97 -38.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602553909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.636 kcal (2) G-P(sol) polarization free energy of solvation -29.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds