Wall clock time and date at job start Sun Mar 29 2020 21:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47239 * 89.99935 * 9 7 5 11 11 H 1.48495 * 109.47323 * 209.99675 * 9 7 5 12 12 H 1.48505 * 109.47112 * 330.00112 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 H 1.08999 * 109.64096 * 324.99886 * 15 14 13 17 17 C 1.53030 * 109.64250 * 85.41408 * 15 14 13 18 18 C 1.50160 * 110.09628 * 168.90314 * 17 15 14 19 19 C 1.29446 * 124.14591 * 343.29020 * 18 17 15 20 20 C 1.50066 * 124.07729 * 0.23624 * 19 18 17 21 21 C 1.53019 * 110.14860 * 342.86857 * 20 19 18 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 26 26 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 27 27 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 28 28 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 29 29 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 30 30 H 1.00892 * 111.00581 * 56.04080 * 14 13 2 31 31 H 1.08994 * 109.35949 * 289.33219 * 17 15 14 32 32 H 1.09003 * 109.35313 * 48.91503 * 17 15 14 33 33 H 1.07998 * 117.89328 * 163.03387 * 18 17 15 34 34 H 1.08002 * 117.96047 * 180.25797 * 19 18 17 35 35 H 1.09005 * 109.36041 * 222.66458 * 20 19 18 36 36 H 1.09002 * 109.25099 * 103.01040 * 20 19 18 37 37 H 1.09009 * 109.64232 * 289.75524 * 21 20 19 38 38 H 1.09003 * 109.82120 * 169.22323 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.1723 0.0954 5.7237 11 1 2.5090 0.3536 6.3181 12 1 1.4245 2.0086 4.9162 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 1 3.0898 -1.0987 -3.4768 17 6 1.1116 -1.6859 -4.1038 18 6 1.4428 -2.1799 -5.4827 19 6 2.2323 -1.5658 -6.3043 20 6 2.9321 -0.2754 -5.9922 21 6 2.2708 0.4059 -4.7923 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6053 -1.7198 1.2952 26 1 3.1263 -0.7995 1.2056 27 1 2.9235 -1.8416 4.7319 28 1 3.1264 -0.7995 -1.2055 29 1 1.6055 -1.7198 -1.2951 30 1 1.9882 0.9872 -2.3967 31 1 1.1351 -2.5196 -3.4021 32 1 0.1130 -1.2492 -4.1096 33 1 0.9969 -3.1084 -5.8074 34 1 2.3974 -2.0094 -7.2751 35 1 2.8766 0.3844 -6.8581 36 1 3.9773 -0.4803 -5.7606 37 1 1.2864 0.7768 -5.0781 38 1 2.8899 1.2355 -4.4508 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602553909.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:10 Heat of formation + Delta-G solvation = -33.683679 kcal Electronic energy + Delta-G solvation = -15187.336739 eV Core-core repulsion = 12834.762949 eV Total energy + Delta-G solvation = -2352.573789 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.88072 -37.71195 -35.26688 -33.74931 -31.68713 -30.12848 -28.61617 -26.59091 -24.71288 -23.63550 -22.29476 -20.73539 -18.73819 -18.44576 -17.18786 -16.53682 -16.33338 -15.73341 -15.56980 -14.77781 -14.50487 -14.33762 -13.86742 -13.74579 -13.55684 -13.27474 -13.13390 -13.03430 -12.73521 -12.62462 -12.20465 -12.04442 -11.85568 -11.58139 -11.43820 -11.19051 -11.06720 -10.82235 -10.53456 -9.84731 -9.32813 -8.17316 -6.26716 1.40595 1.41784 1.43743 1.52752 2.42422 3.16107 3.19402 3.78376 3.90651 4.14173 4.17457 4.31677 4.42241 4.47787 4.51870 4.57348 4.70625 4.76340 4.87436 4.91841 4.99712 5.03491 5.04460 5.12591 5.27102 5.29142 5.38122 5.46758 5.50880 5.56676 5.79438 5.81462 5.88813 6.07687 6.13371 6.31794 6.54319 6.89345 7.41755 8.94918 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.064091 B = 0.004564 C = 0.004522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.776188 B = 6133.548412 C = 6190.478833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.055 0.945 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.062 0.938 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.262 1.262 13 C 0.079 3.921 14 N -0.680 5.680 15 C 0.085 3.915 16 H 0.031 0.969 17 C -0.080 4.080 18 C -0.164 4.164 19 C -0.161 4.161 20 C -0.089 4.089 21 C -0.115 4.115 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.067 0.933 25 H -0.012 1.012 26 H -0.015 1.015 27 H 0.262 0.738 28 H 0.014 0.986 29 H 0.057 0.943 30 H 0.345 0.655 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.276 2.764 -19.222 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.050 4.050 14 N -0.311 5.311 15 C -0.025 4.025 16 H 0.049 0.951 17 C -0.118 4.118 18 C -0.182 4.182 19 C -0.179 4.179 20 C -0.126 4.126 21 C -0.153 4.153 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.086 0.914 25 H 0.007 0.993 26 H 0.003 0.997 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.830 2.379 -19.136 19.370 hybrid contribution 0.932 0.020 1.261 1.568 sum -0.898 2.399 -17.875 18.058 Atomic orbital electron populations 1.21477 0.94628 1.00290 1.00550 1.21016 0.96766 0.98421 0.93065 0.92672 1.19021 0.94023 0.94680 0.92871 1.21645 1.34378 1.08633 0.92051 0.92006 1.25966 0.95214 0.96115 1.02701 1.70112 1.40334 1.23037 1.24266 0.85490 0.77983 0.79315 0.78533 1.19895 1.20921 1.18650 1.21865 0.96187 0.97338 0.89640 1.60488 1.64108 1.05740 1.00795 1.21595 0.95623 0.95450 0.89825 0.95072 1.20418 0.99618 0.97527 0.94190 1.22175 1.00256 1.00439 0.95373 1.22257 0.98384 0.97452 0.99782 1.20478 0.99125 0.94826 0.98190 1.21751 1.01851 0.97139 0.94571 0.94796 0.94308 0.91383 0.99330 0.99688 0.92952 0.96751 0.92401 0.83652 0.92669 0.90510 0.87087 0.86407 0.89126 0.90762 0.90994 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.36 8.89 71.98 0.64 -3.72 16 2 C -0.07 -3.08 2.48 -10.79 -0.03 -3.10 16 3 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -30.33 8.41 25.60 0.22 -30.12 16 6 H 0.06 3.40 7.06 -2.91 -0.02 3.38 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 8 N -0.94 -58.02 13.29 21.44 0.28 -57.74 16 9 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 12 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 13 C 0.08 2.81 4.88 86.30 0.42 3.23 16 14 N -0.68 -19.32 5.77 -490.84 -2.83 -22.15 16 15 C 0.08 2.09 2.53 45.06 0.11 2.20 16 16 H 0.03 0.85 7.79 -2.39 -0.02 0.83 16 17 C -0.08 -1.93 5.59 29.69 0.17 -1.77 16 18 C -0.16 -3.31 9.80 27.06 0.27 -3.04 16 19 C -0.16 -2.82 9.80 27.03 0.27 -2.55 16 20 C -0.09 -1.44 6.12 29.66 0.18 -1.25 16 21 C -0.12 -2.20 5.37 30.73 0.17 -2.04 16 22 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.04 1.60 6.95 -2.39 -0.02 1.58 16 24 H 0.07 2.29 7.75 -2.39 -0.02 2.27 16 25 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 26 H -0.02 -0.89 8.14 -2.38 -0.02 -0.91 16 27 H 0.26 15.24 8.31 -92.70 -0.77 14.47 16 28 H 0.01 0.53 8.06 -2.39 -0.02 0.51 16 29 H 0.06 2.14 7.71 -2.39 -0.02 2.13 16 30 H 0.34 9.03 8.28 -89.70 -0.74 8.29 16 31 H 0.05 1.47 7.79 -2.39 -0.02 1.45 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.11 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.12 1.64 8.06 -2.91 -0.02 1.61 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.39 8.13 -2.38 -0.02 1.37 16 38 H 0.07 1.27 7.99 -2.39 -0.02 1.25 16 Total: -1.00 -63.39 302.62 2.74 -60.65 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.26 Total: 12.37 kcal Atomic # 6 Polarization: -43.04 SS G_CDS: 3.00 Total: -40.04 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -2.55 Total: -79.89 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.39 2.74 -60.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602553909.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.969 kcal (2) G-P(sol) polarization free energy of solvation -63.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds