Wall clock time and date at job start Sun Mar 29 2020 21:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46778 * 89.99942 * 9 7 5 11 11 H 1.48494 * 109.46946 * 209.99639 * 9 7 5 12 12 H 1.48492 * 109.47121 * 330.00156 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.52997 * 110.91242 * 56.03660 * 15 14 13 17 17 C 1.54638 * 111.03793 * 292.02407 * 15 14 13 18 18 C 1.51102 * 104.72306 * 217.33456 * 17 15 14 19 19 C 1.30518 * 111.10831 * 16.43748 * 18 17 15 20 20 C 1.51106 * 111.10232 * 359.97438 * 19 18 17 21 21 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 22 22 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 24 24 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 25 25 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 26 26 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 28 28 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 29 29 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 30 30 H 1.08999 * 109.47371 * 60.69822 * 16 15 14 31 31 H 1.08996 * 109.47025 * 180.70053 * 16 15 14 32 32 H 1.09006 * 109.47361 * 300.69826 * 16 15 14 33 33 H 1.09004 * 110.38728 * 336.14665 * 17 15 14 34 34 H 1.08994 * 110.38292 * 98.52246 * 17 15 14 35 35 H 1.08004 * 124.44240 * 196.45623 * 18 17 15 36 36 H 1.07997 * 124.45349 * 180.02562 * 19 18 17 37 37 H 1.08996 * 110.38838 * 224.75106 * 20 19 18 38 38 H 1.09002 * 110.48664 * 102.42441 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 2.5630 1.5413 -5.5830 11 1 1.3104 -0.3724 -6.3887 12 1 0.2267 1.2833 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 6 3.6399 -0.8403 3.6197 17 6 1.3823 -1.9628 3.8971 18 6 1.1960 -2.0459 5.3943 19 6 1.3785 -0.8820 5.9560 20 6 1.7177 0.1714 4.9272 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.1263 -0.7996 -1.2056 25 1 1.6053 -1.7199 -1.2951 26 1 2.9220 -1.8430 -4.7318 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 1.9882 0.9874 2.3966 30 1 4.1409 0.1244 3.5405 31 1 3.9643 -1.3446 4.5299 32 1 3.8934 -1.4534 2.7547 33 1 0.4153 -1.9508 3.3941 34 1 1.9854 -2.7986 3.5425 35 1 0.9450 -2.9499 5.9293 36 1 1.2986 -0.6963 7.0169 37 1 2.5483 0.7866 5.2731 38 1 0.8475 0.7933 4.7167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602707063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:25 Heat of formation + Delta-G solvation = -4.450003 kcal Electronic energy + Delta-G solvation = -15451.209173 eV Core-core repulsion = 13099.903052 eV Total energy + Delta-G solvation = -2351.306122 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48145 -36.11525 -33.52548 -31.88692 -29.04130 -28.25716 -26.71146 -26.04545 -24.59345 -22.41712 -19.54236 -18.89913 -18.44605 -16.26373 -16.08324 -15.20871 -14.59750 -14.40867 -14.13782 -13.35282 -13.23222 -12.53791 -12.26531 -12.20703 -12.03377 -11.89270 -11.44604 -11.41115 -11.23219 -11.10345 -10.84785 -10.71554 -10.44370 -10.25696 -10.16440 -9.66440 -9.10715 -8.92017 -8.90297 -8.30504 -8.05778 -5.95362 -3.96302 2.25139 3.34463 3.40767 3.44344 4.38698 4.52090 4.54788 4.76093 5.05773 5.21902 5.40469 5.43947 5.62222 5.67434 5.71682 5.86602 5.89298 5.93976 5.99754 6.00616 6.11648 6.22271 6.31629 6.48708 6.49883 6.62711 6.73467 6.88095 7.07223 7.22138 7.24680 7.46476 7.70397 7.74549 7.89052 8.05188 8.49471 9.10171 9.66977 11.16188 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060235 B = 0.005052 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.736677 B = 5540.982236 C = 5644.588138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.061 3.939 14 N -0.672 5.672 15 C 0.105 3.895 16 C -0.173 4.173 17 C -0.089 4.089 18 C -0.162 4.162 19 C -0.170 4.170 20 C -0.090 4.090 21 H 0.052 0.948 22 H 0.038 0.962 23 H 0.041 0.959 24 H 0.012 0.988 25 H 0.016 0.984 26 H 0.259 0.741 27 H 0.066 0.934 28 H 0.028 0.972 29 H 0.337 0.663 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 1.087 17.091 17.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.717 3.283 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.067 4.067 14 N -0.302 5.302 15 C 0.014 3.986 16 C -0.232 4.232 17 C -0.126 4.126 18 C -0.180 4.180 19 C -0.188 4.188 20 C -0.128 4.128 21 H 0.071 0.929 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.034 0.966 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.046 0.954 29 H 0.155 0.845 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.563 0.694 16.969 17.055 hybrid contribution 0.805 0.554 -0.922 1.343 sum -0.758 1.248 16.047 16.113 Atomic orbital electron populations 1.21587 0.95794 1.00500 1.00087 1.21204 0.95947 0.98882 0.94135 0.92927 1.19117 0.95860 0.95566 0.90473 1.21247 1.34509 1.08249 0.91010 0.92589 1.25020 0.95380 0.95075 0.99076 1.69972 1.39238 1.21187 1.23331 0.86634 0.78927 0.79806 0.82886 1.20785 1.21315 1.19883 1.22190 0.97455 0.97800 0.89265 1.60772 1.62977 1.05433 1.01003 1.21711 0.92147 0.94327 0.90460 1.22401 0.96483 1.01949 1.02327 1.21415 1.01263 0.96507 0.93425 1.23272 1.00579 0.97935 0.96241 1.23164 1.01676 0.95323 0.98668 1.21415 1.01360 0.97253 0.92728 0.92857 0.94237 0.93960 0.96990 0.96596 0.93136 0.91559 0.95365 0.84510 0.92722 0.92360 0.91772 0.89436 0.91536 0.86208 0.86254 0.91667 0.89715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.89 37.16 0.33 -2.08 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 C 0.06 1.06 4.44 -3.82 -0.02 1.05 16 14 N -0.67 -9.78 5.57 -98.23 -0.55 -10.32 16 15 C 0.11 1.33 0.87 -129.89 -0.11 1.22 16 16 C -0.17 -2.12 8.14 37.16 0.30 -1.81 16 17 C -0.09 -1.12 5.11 -26.82 -0.14 -1.26 16 18 C -0.16 -1.76 10.77 -35.69 -0.38 -2.15 16 19 C -0.17 -1.77 10.78 -35.69 -0.38 -2.15 16 20 C -0.09 -1.00 6.07 -26.84 -0.16 -1.17 16 21 H 0.05 1.12 6.95 -51.93 -0.36 0.76 16 22 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 23 H 0.04 0.74 7.75 -51.93 -0.40 0.34 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 27 H 0.07 1.19 7.44 -51.93 -0.39 0.80 16 28 H 0.03 0.50 6.34 -51.93 -0.33 0.17 16 29 H 0.34 4.68 8.77 -39.29 -0.34 4.34 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.86 6.45 -51.93 -0.33 0.53 16 33 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 34 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 35 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.06 0.66 7.91 -51.93 -0.41 0.25 16 38 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 LS Contribution 301.58 15.07 4.54 4.54 Total: -1.00 -29.39 301.58 -8.30 -37.68 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.71 Total: 0.68 kcal Atomic # 6 Polarization: -21.66 SS G_CDS: -1.30 Total: -22.96 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.19 Total: -36.78 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.39 -8.30 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602707063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.233 kcal (2) G-P(sol) polarization free energy of solvation -29.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds