Wall clock time and date at job start Sun Mar 29 2020 21:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08990 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47165 * 239.99518 * 2 1 3 5 5 C 1.50701 * 109.46807 * 65.00319 * 4 2 1 6 6 H 1.07998 * 120.00496 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99849 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99832 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00049 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46778 * 89.99942 * 9 7 5 11 11 H 1.48494 * 109.46946 * 209.99639 * 9 7 5 12 12 H 1.48492 * 109.47121 * 330.00156 * 9 7 5 13 13 C 1.53000 * 109.46867 * 120.00072 * 2 1 3 14 14 N 1.46901 * 109.46769 * 294.99558 * 13 2 1 15 15 C 1.46906 * 110.99793 * 180.02562 * 14 13 2 16 16 C 1.52997 * 110.91242 * 56.03660 * 15 14 13 17 17 C 1.54638 * 111.03793 * 292.02407 * 15 14 13 18 18 C 1.51102 * 104.72306 * 217.33456 * 17 15 14 19 19 C 1.30518 * 111.10831 * 16.43748 * 18 17 15 20 20 C 1.51106 * 111.10232 * 359.97438 * 19 18 17 21 21 H 1.09004 * 109.46908 * 60.00183 * 1 2 3 22 22 H 1.09000 * 109.47443 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47099 * 300.00307 * 1 2 3 24 24 H 1.08993 * 109.47416 * 185.00006 * 4 2 1 25 25 H 1.09001 * 109.46966 * 305.00739 * 4 2 1 26 26 H 0.97010 * 119.99808 * 180.02562 * 8 7 5 27 27 H 1.09002 * 109.47398 * 54.99853 * 13 2 1 28 28 H 1.09001 * 109.47194 * 175.00033 * 13 2 1 29 29 H 1.00899 * 111.00283 * 303.95539 * 14 13 2 30 30 H 1.08999 * 109.47371 * 60.69822 * 16 15 14 31 31 H 1.08996 * 109.47025 * 180.70053 * 16 15 14 32 32 H 1.09006 * 109.47361 * 300.69826 * 16 15 14 33 33 H 1.09004 * 110.38728 * 336.14665 * 17 15 14 34 34 H 1.08994 * 110.38292 * 98.52246 * 17 15 14 35 35 H 1.08004 * 124.44240 * 196.45623 * 18 17 15 36 36 H 1.07997 * 124.45349 * 180.02562 * 19 18 17 37 37 H 1.08996 * 110.38838 * 224.75106 * 20 19 18 38 38 H 1.09002 * 110.48664 * 102.42441 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 1 1.0801 0.9741 -2.3758 7 6 1.9924 -0.4024 -3.7283 8 7 2.6747 -1.5200 -3.8511 9 14 1.4977 0.5619 -5.2498 10 1 2.5630 1.5413 -5.5830 11 1 1.3104 -0.3724 -6.3887 12 1 0.2267 1.2833 -4.9870 13 6 2.0400 -0.7213 1.2493 14 7 1.6514 0.0375 2.4456 15 6 2.1257 -0.6264 3.6672 16 6 3.6399 -0.8403 3.6197 17 6 1.3823 -1.9628 3.8971 18 6 1.1960 -2.0459 5.3943 19 6 1.3785 -0.8820 5.9560 20 6 1.7177 0.1714 4.9272 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 3.1263 -0.7996 -1.2056 25 1 1.6053 -1.7199 -1.2951 26 1 2.9220 -1.8430 -4.7318 27 1 1.6053 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 1.9882 0.9874 2.3966 30 1 4.1409 0.1244 3.5405 31 1 3.9643 -1.3446 4.5299 32 1 3.8934 -1.4534 2.7547 33 1 0.4153 -1.9508 3.3941 34 1 1.9854 -2.7986 3.5425 35 1 0.9450 -2.9499 5.9293 36 1 1.2986 -0.6963 7.0169 37 1 2.5483 0.7866 5.2731 38 1 0.8475 0.7933 4.7167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602707063.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:25 Heat of formation + Delta-G solvation = -21.317842 kcal Electronic energy + Delta-G solvation = -15451.940618 eV Core-core repulsion = 13099.903052 eV Total energy + Delta-G solvation = -2352.037566 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49790 -37.66185 -35.17316 -33.68224 -30.30604 -29.18107 -28.63349 -27.23008 -26.04195 -24.24437 -20.98951 -20.07318 -19.47022 -18.43482 -17.10618 -16.49695 -16.20701 -15.90913 -15.56902 -14.77713 -14.42046 -14.18741 -13.91637 -13.46701 -13.23590 -13.00936 -12.91644 -12.82027 -12.77381 -12.49689 -12.36486 -12.18287 -11.99349 -11.91570 -11.48650 -11.44768 -11.06621 -10.86929 -10.53056 -9.76226 -9.28694 -8.17093 -6.26307 1.40408 1.41535 1.43574 1.52670 2.42455 3.16353 3.23464 3.60551 3.85356 4.07804 4.16487 4.36013 4.38618 4.50834 4.53988 4.69407 4.77916 4.83727 4.89549 4.94511 5.01336 5.02555 5.08111 5.11115 5.15047 5.30722 5.33377 5.47583 5.51122 5.57474 5.66028 5.82094 5.89410 6.06932 6.17226 6.33075 6.56720 6.89769 7.42055 8.95047 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.060235 B = 0.005052 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.736677 B = 5540.982236 C = 5644.588138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.054 0.946 4 C 0.033 3.967 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.961 3.039 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.078 3.922 14 N -0.669 5.669 15 C 0.100 3.900 16 C -0.168 4.168 17 C -0.093 4.093 18 C -0.172 4.172 19 C -0.162 4.162 20 C -0.088 4.088 21 H 0.037 0.963 22 H 0.032 0.968 23 H 0.067 0.933 24 H -0.015 1.015 25 H -0.012 1.012 26 H 0.262 0.738 27 H 0.057 0.943 28 H 0.021 0.979 29 H 0.344 0.656 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.137 0.863 36 H 0.144 0.856 37 H 0.079 0.921 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 2.389 18.385 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.786 3.214 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.051 4.051 14 N -0.299 5.299 15 C 0.009 3.991 16 C -0.227 4.227 17 C -0.130 4.130 18 C -0.190 4.190 19 C -0.180 4.180 20 C -0.125 4.125 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.086 0.914 24 H 0.003 0.997 25 H 0.006 0.994 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.162 0.838 30 H 0.079 0.921 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.155 0.845 36 H 0.162 0.838 37 H 0.098 0.902 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.113 2.008 18.283 18.514 hybrid contribution 0.994 0.127 -1.291 1.635 sum -1.119 2.135 16.992 17.162 Atomic orbital electron populations 1.21478 0.94784 1.00213 1.00461 1.21023 0.96634 0.98439 0.93231 0.92738 1.19008 0.94018 0.94632 0.92830 1.21645 1.34394 1.08562 0.92074 0.92077 1.25957 0.95267 0.96069 1.02661 1.70109 1.40418 1.22917 1.24261 0.85501 0.79035 0.78371 0.78489 1.19853 1.20942 1.18731 1.21835 0.96741 0.97233 0.89295 1.60691 1.63089 1.05576 1.00558 1.21827 0.92390 0.94678 0.90220 1.22347 0.96198 1.02071 1.02104 1.21413 1.00239 0.96337 0.95039 1.23334 1.01607 0.99146 0.94943 1.23374 1.00459 0.94549 0.99664 1.21401 1.01807 0.97404 0.91887 0.94425 0.94860 0.91445 0.99656 0.99369 0.92966 0.92460 0.96037 0.83798 0.92095 0.91143 0.93592 0.91137 0.92263 0.84536 0.83804 0.90223 0.89912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 2 C -0.07 -3.08 2.48 -10.79 -0.03 -3.11 16 3 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 4 C 0.03 1.75 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.28 8.41 25.60 0.22 -30.06 16 6 H 0.06 3.36 7.06 -2.91 -0.02 3.34 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -57.90 13.29 21.45 0.28 -57.61 16 9 Si 0.96 44.88 29.54 68.60 2.03 46.90 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 13 C 0.08 2.73 4.44 86.30 0.38 3.11 16 14 N -0.67 -18.75 5.57 -464.70 -2.59 -21.34 16 15 C 0.10 2.40 0.87 4.63 0.00 2.40 16 16 C -0.17 -3.93 8.14 71.98 0.59 -3.34 16 17 C -0.09 -2.28 5.11 30.53 0.16 -2.12 16 18 C -0.17 -3.39 10.77 26.27 0.28 -3.11 16 19 C -0.16 -2.89 10.78 26.27 0.28 -2.60 16 20 C -0.09 -1.72 6.07 30.53 0.19 -1.53 16 21 H 0.04 1.56 6.95 -2.38 -0.02 1.54 16 22 H 0.03 1.30 8.14 -2.39 -0.02 1.29 16 23 H 0.07 2.28 7.75 -2.39 -0.02 2.26 16 24 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 25 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 26 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 27 H 0.06 2.10 7.44 -2.39 -0.02 2.09 16 28 H 0.02 0.78 6.34 -2.39 -0.02 0.76 16 29 H 0.34 8.97 8.77 -89.69 -0.79 8.18 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.05 1.23 6.45 -2.38 -0.02 1.22 16 33 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 34 H 0.06 1.50 7.91 -2.39 -0.02 1.48 16 35 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 36 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 37 H 0.08 1.35 7.91 -2.39 -0.02 1.33 16 38 H 0.08 1.69 8.08 -2.39 -0.02 1.68 16 Total: -1.00 -63.17 301.58 3.25 -59.92 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.22 Total: 14.02 kcal Atomic # 6 Polarization: -45.20 SS G_CDS: 3.30 Total: -41.89 kcal Atomic # 7 Polarization: -76.65 SS G_CDS: -2.30 Total: -78.95 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.17 3.25 -59.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602707063.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.603 kcal (2) G-P(sol) polarization free energy of solvation -63.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds