Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47214 * 2 1 4 4 C 1.52998 * 109.47595 * 239.99918 * 2 1 3 5 5 C 1.50703 * 109.46869 * 64.99608 * 4 2 1 6 6 H 1.07994 * 120.00286 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99666 * 180.02562 * 5 4 2 8 8 N 1.31506 * 119.99902 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 119.99515 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47067 * 90.00531 * 9 7 5 11 11 H 1.48506 * 109.46859 * 209.99989 * 9 7 5 12 12 H 1.48496 * 109.47516 * 330.00113 * 9 7 5 13 13 C 1.53001 * 109.47238 * 119.99529 * 2 1 3 14 14 N 1.46899 * 109.47173 * 183.18420 * 13 2 1 15 15 C 1.47923 * 110.97948 * 73.21223 * 14 13 2 16 16 C 1.52991 * 108.19549 * 199.79645 * 15 14 13 17 17 C 1.52980 * 109.63602 * 305.43890 * 16 15 14 18 18 H 1.08991 * 115.51389 * 232.25996 * 17 16 15 19 19 C 1.53602 * 115.98292 * 89.08778 * 17 16 15 20 20 C 1.51600 * 59.91274 * 249.67136 * 19 17 16 21 21 H 1.09001 * 115.84232 * 253.04872 * 20 19 17 22 22 C 1.46744 * 111.00061 * 196.04831 * 14 13 2 23 23 H 1.08999 * 109.47732 * 294.53117 * 1 2 3 24 24 H 1.08998 * 109.47608 * 54.54155 * 1 2 3 25 25 H 1.09004 * 109.46981 * 174.53840 * 1 2 3 26 26 H 1.08997 * 109.47470 * 185.00018 * 4 2 1 27 27 H 1.09001 * 109.47104 * 304.99871 * 4 2 1 28 28 H 0.97007 * 120.00158 * 180.02562 * 8 7 5 29 29 H 1.09009 * 109.46926 * 63.19169 * 13 2 1 30 30 H 1.08993 * 109.47455 * 303.18871 * 13 2 1 31 31 H 1.09002 * 110.17110 * 79.98186 * 15 14 13 32 32 H 1.08996 * 109.45414 * 319.19393 * 15 14 13 33 33 H 1.09000 * 109.45088 * 185.39009 * 16 15 14 34 34 H 1.08999 * 109.44352 * 65.48486 * 16 15 14 35 35 H 1.08993 * 117.52825 * 356.99700 * 19 17 16 36 36 H 1.09010 * 117.51811 * 142.15745 * 19 17 16 37 37 H 1.09000 * 109.29753 * 59.87205 * 22 14 13 38 38 H 1.08993 * 109.30184 * 300.48219 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6413 0.0570 -2.4765 6 1 1.0806 0.9745 -2.3757 7 6 1.9924 -0.4023 -3.7283 8 7 2.6748 -1.5197 -3.8511 9 14 1.4976 0.5620 -5.2496 10 1 2.5628 1.5416 -5.5830 11 1 1.3103 -0.3723 -6.3887 12 1 0.2264 1.2833 -4.9868 13 6 2.0400 -0.7211 1.2493 14 7 3.5069 -0.6549 1.2884 15 6 3.9664 0.7060 1.6420 16 6 5.4217 0.8507 1.1928 17 6 6.2605 -0.2775 1.7961 18 1 7.1562 0.0380 2.3311 19 6 6.3489 -1.5676 0.9672 20 6 5.5725 -1.5525 2.2693 21 1 6.0398 -2.0699 3.1071 22 6 4.0526 -1.6343 2.2351 23 1 -0.3634 0.4267 0.9349 24 1 -0.3634 0.5961 -0.8370 25 1 -0.3633 -1.0230 -0.0978 26 1 3.1263 -0.7994 -1.2055 27 1 1.6055 -1.7198 -1.2951 28 1 2.9222 -1.8428 -4.7317 29 1 1.7241 -1.7641 1.2212 30 1 1.6308 -0.2414 2.1383 31 1 3.8992 0.8573 2.7193 32 1 3.3496 1.4426 1.1271 33 1 5.8113 1.8117 1.5284 34 1 5.4726 0.7988 0.1052 35 1 5.7751 -1.6120 0.0416 36 1 7.3032 -2.0942 0.9553 37 1 3.7526 -2.6366 1.9294 38 1 3.6584 -1.4313 3.2308 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602714788.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = 9.404145 kcal Electronic energy + Delta-G solvation = -15958.712838 eV Core-core repulsion = 13608.007477 eV Total energy + Delta-G solvation = -2350.705361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.39134 -36.20124 -33.57417 -31.85441 -30.92040 -27.13351 -26.51909 -24.14321 -23.22700 -22.14620 -20.98260 -18.73858 -18.20936 -16.39161 -16.04717 -14.95267 -14.60612 -14.35942 -13.84286 -13.55257 -13.14308 -12.55922 -12.46026 -12.02634 -11.86707 -11.69108 -11.37768 -11.15198 -10.96821 -10.82567 -10.75167 -10.42136 -10.27490 -9.98655 -9.70337 -9.53283 -9.44272 -9.00913 -8.79934 -8.20331 -7.73966 -5.85162 -3.85306 3.38519 3.44825 3.47627 3.97565 4.32103 4.56564 4.89806 5.10615 5.20299 5.31600 5.50252 5.57565 5.60398 5.68087 5.77257 5.81624 6.00087 6.03235 6.10546 6.13824 6.17547 6.26948 6.30598 6.32856 6.45909 6.57478 6.60964 6.69009 7.03269 7.09259 7.35232 7.54724 7.64745 7.89526 8.11993 8.26048 8.61452 9.22793 9.76548 11.25880 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028516 B = 0.007825 C = 0.006939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.655655 B = 3577.446496 C = 4034.049604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.083 4.083 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.051 0.949 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.884 3.116 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.063 3.937 14 N -0.519 5.519 15 C 0.053 3.947 16 C -0.084 4.084 17 C -0.149 4.149 18 H 0.094 0.906 19 C -0.166 4.166 20 C -0.146 4.146 21 H 0.095 0.905 22 C 0.085 3.915 23 H 0.027 0.973 24 H 0.060 0.940 25 H 0.046 0.954 26 H 0.033 0.967 27 H 0.008 0.992 28 H 0.257 0.743 29 H 0.066 0.934 30 H 0.018 0.982 31 H 0.029 0.971 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.035 1.748 12.524 13.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.073 0.927 4 C 0.000 4.000 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.144 4.144 8 N -0.534 5.534 9 Si 0.712 3.288 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.064 4.064 14 N -0.243 5.243 15 C -0.075 4.075 16 C -0.122 4.122 17 C -0.168 4.168 18 H 0.112 0.888 19 C -0.203 4.203 20 C -0.165 4.165 21 H 0.113 0.887 22 C -0.043 4.043 23 H 0.046 0.954 24 H 0.079 0.921 25 H 0.065 0.935 26 H 0.052 0.948 27 H 0.026 0.974 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.036 0.964 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.279 1.503 11.914 12.748 hybrid contribution -0.474 0.579 -0.086 0.753 sum 3.805 2.082 11.828 12.598 Atomic orbital electron populations 1.21696 0.96533 1.01210 0.99527 1.21220 0.94067 0.99170 0.95705 0.92710 1.19027 0.97447 0.94359 0.89143 1.21332 1.34231 1.08091 0.91445 0.93084 1.24982 0.95562 0.95068 0.98814 1.69975 1.39301 1.21139 1.23013 0.86731 0.78811 0.79900 0.83326 1.20881 1.21426 1.20092 1.22254 0.85972 1.00806 0.97374 1.62461 1.09513 1.03983 1.48312 1.22288 0.96337 0.91360 0.97489 1.21110 0.93580 0.95883 1.01593 1.22218 1.00709 0.89873 1.03966 0.88773 1.22989 1.00827 1.00089 0.96371 1.21801 0.94438 1.01468 0.98772 0.88678 1.21380 0.92255 0.97107 0.93575 0.95399 0.92073 0.93531 0.94826 0.97400 0.93326 0.91529 0.96410 0.95264 0.90332 0.92029 0.90252 0.87140 0.89848 0.90553 0.95462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 8.91 37.15 0.33 -2.18 16 2 C -0.08 -1.71 2.36 -90.62 -0.21 -1.93 16 3 H 0.05 1.15 6.53 -51.93 -0.34 0.82 16 4 C 0.04 0.97 4.38 -27.88 -0.12 0.85 16 5 C -0.51 -14.56 8.48 -34.44 -0.29 -14.85 16 6 H 0.05 1.42 7.06 -52.49 -0.37 1.05 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 9 Si 0.88 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.06 1.13 4.37 -3.82 -0.02 1.11 16 14 N -0.52 -8.96 3.70 -234.37 -0.87 -9.82 16 15 C 0.05 0.83 5.42 -3.27 -0.02 0.81 16 16 C -0.08 -1.23 6.08 -26.75 -0.16 -1.40 16 17 C -0.15 -2.04 6.29 -90.62 -0.57 -2.61 16 18 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 19 C -0.17 -2.44 9.72 -27.13 -0.26 -2.70 16 20 C -0.15 -2.00 6.05 -92.02 -0.56 -2.56 16 21 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 22 C 0.09 1.27 5.34 -4.29 -0.02 1.25 16 23 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 1.24 7.12 -51.93 -0.37 0.87 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.03 0.95 7.56 -51.93 -0.39 0.55 16 27 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.07 1.19 7.95 -51.92 -0.41 0.78 16 30 H 0.02 0.29 8.04 -51.93 -0.42 -0.13 16 31 H 0.03 0.42 7.99 -51.93 -0.42 0.01 16 32 H 0.08 1.29 6.32 -51.93 -0.33 0.96 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 35 H 0.11 1.98 8.14 -51.93 -0.42 1.56 16 36 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 37 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 38 H 0.03 0.38 8.13 -51.93 -0.42 -0.05 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -29.89 296.99 -9.50 -39.39 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -6.82 Total: -1.80 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: -2.00 Total: -22.68 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.13 Total: -36.42 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.89 -9.50 -39.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602714788.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.793 kcal (2) G-P(sol) polarization free energy of solvation -29.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds