Wall clock time and date at job start Sun Mar 29 2020 21:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46705 * 2 1 4 4 C 1.52997 * 109.46702 * 240.00711 * 2 1 3 5 5 C 1.50701 * 109.47536 * 64.99807 * 4 2 1 6 6 H 1.07996 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.37872 * 120.00092 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99959 * 180.02562 * 7 5 4 9 9 Si 1.86806 * 120.00140 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47230 * 89.99960 * 9 7 5 11 11 H 1.48498 * 109.47013 * 210.00266 * 9 7 5 12 12 H 1.48500 * 109.46787 * 329.99846 * 9 7 5 13 13 C 1.53000 * 109.47399 * 120.00411 * 2 1 3 14 14 N 1.46896 * 109.47017 * 295.00361 * 13 2 1 15 15 C 1.46898 * 110.99922 * 179.97438 * 14 13 2 16 16 C 1.50705 * 109.47097 * 179.97438 * 15 14 13 17 17 C 1.30528 * 124.44769 * 94.70224 * 16 15 14 18 18 C 1.51097 * 111.10203 * 180.26612 * 17 16 15 19 19 C 1.54627 * 104.72876 * 343.55965 * 18 17 16 20 20 C 1.51106 * 124.44850 * 274.99955 * 16 15 14 21 21 H 1.09000 * 109.47633 * 59.99755 * 1 2 3 22 22 H 1.09007 * 109.46831 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47220 * 299.98862 * 1 2 3 24 24 H 1.09005 * 109.46770 * 184.99972 * 4 2 1 25 25 H 1.09001 * 109.47558 * 304.99283 * 4 2 1 26 26 H 0.97002 * 119.99651 * 180.02562 * 8 7 5 27 27 H 1.08996 * 109.47017 * 175.00181 * 13 2 1 28 28 H 1.09003 * 109.47001 * 55.00031 * 13 2 1 29 29 H 1.00910 * 110.99819 * 303.95157 * 14 13 2 30 30 H 1.09003 * 109.47144 * 59.99858 * 15 14 13 31 31 H 1.08993 * 109.47529 * 299.99884 * 15 14 13 32 32 H 1.07996 * 124.44406 * 0.24205 * 17 16 15 33 33 H 1.09005 * 110.38749 * 224.74606 * 18 17 16 34 34 H 1.09000 * 110.48392 * 102.42800 * 18 17 16 35 35 H 1.09002 * 111.04087 * 266.60195 * 19 18 17 36 36 H 1.09001 * 111.04142 * 142.66617 * 19 18 17 37 37 H 1.09003 * 110.38579 * 314.98301 * 20 16 15 38 38 H 1.09001 * 110.38515 * 77.24547 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0573 -2.4766 6 1 1.0799 0.9743 -2.3756 7 6 1.9930 -0.4014 -3.7283 8 7 1.6455 0.2782 -4.7993 9 14 2.9646 -1.9873 -3.9030 10 1 2.0264 -3.1323 -4.0198 11 1 3.8132 -1.9165 -5.1196 12 1 3.8268 -2.1736 -2.7083 13 6 2.0401 -0.7213 1.2492 14 7 1.6514 0.0372 2.4456 15 6 2.1248 -0.6274 3.6671 16 6 1.7088 0.1783 4.8708 17 6 0.6268 -0.0401 5.5674 18 6 0.5022 0.9486 6.7032 19 6 1.9141 1.5625 6.8466 20 6 2.4863 1.3490 5.4260 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5137 0.8901 24 1 3.1263 -0.7993 -1.2057 25 1 1.6054 -1.7197 -1.2953 26 1 1.8927 -0.0447 -5.6800 27 1 3.1264 -0.7995 1.2055 28 1 1.6055 -1.7199 1.2950 29 1 1.9882 0.9872 2.3967 30 1 3.2118 -0.7053 3.6404 31 1 1.6906 -1.6251 3.7295 32 1 -0.0860 -0.8242 5.3590 33 1 0.2153 0.4372 7.6221 34 1 -0.2252 1.7223 6.4573 35 1 2.5014 1.0237 7.5901 36 1 1.8566 2.6235 7.0899 37 1 3.5485 1.1098 5.4765 38 1 2.3263 2.2360 4.8130 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602718847.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:29 Heat of formation + Delta-G solvation = -27.042078 kcal Electronic energy + Delta-G solvation = -14906.806342 eV Core-core repulsion = 12554.520554 eV Total energy + Delta-G solvation = -2352.285788 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.71048 -38.15255 -35.56024 -34.00567 -30.79550 -29.38051 -29.02332 -26.88723 -25.02797 -23.49121 -21.64326 -20.88511 -19.05150 -18.76850 -16.82888 -16.59882 -16.34747 -16.12206 -15.53637 -15.19873 -14.75947 -14.41571 -13.86539 -13.55360 -13.43984 -13.20038 -12.82905 -12.70088 -12.52378 -12.44402 -12.17321 -12.02446 -11.89899 -11.87333 -11.71048 -11.46895 -11.18749 -11.04194 -10.73865 -9.63650 -9.27235 -8.26111 -6.28612 1.29397 1.36108 1.37553 1.49389 2.37757 3.09018 3.39613 3.72788 3.76958 4.09343 4.21826 4.25932 4.33583 4.46402 4.50197 4.57593 4.67075 4.85008 4.88867 4.90570 4.92892 4.95020 5.03961 5.08611 5.09660 5.22261 5.38600 5.39709 5.40841 5.54279 5.69107 5.71813 5.73297 6.05252 6.11314 6.34710 6.47308 6.79005 7.34944 8.90734 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.059868 B = 0.004410 C = 0.004320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.579592 B = 6347.456653 C = 6480.248136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 H 0.049 0.951 4 C -0.007 4.007 5 C -0.519 4.519 6 H 0.034 0.966 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.949 3.051 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.247 1.247 13 C 0.074 3.926 14 N -0.684 5.684 15 C 0.107 3.893 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.100 4.100 19 C -0.121 4.121 20 C -0.096 4.096 21 H 0.027 0.973 22 H 0.043 0.957 23 H 0.063 0.937 24 H 0.016 0.984 25 H 0.017 0.983 26 H 0.265 0.735 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.341 0.659 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.069 0.931 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.712 -1.540 23.691 23.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 H 0.068 0.932 4 C -0.045 4.045 5 C -0.558 4.558 6 H 0.052 0.948 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.773 3.227 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.171 1.171 13 C -0.055 4.055 14 N -0.315 5.315 15 C -0.021 4.021 16 C -0.148 4.148 17 C -0.175 4.175 18 C -0.137 4.137 19 C -0.158 4.158 20 C -0.133 4.133 21 H 0.046 0.954 22 H 0.062 0.938 23 H 0.082 0.918 24 H 0.034 0.966 25 H 0.035 0.965 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.159 0.841 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.139 0.861 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.110 -1.822 23.552 23.649 hybrid contribution 1.121 -0.234 -1.023 1.536 sum 2.230 -2.056 22.529 22.732 Atomic orbital electron populations 1.21494 0.95103 1.00668 0.99994 1.20888 0.96449 0.98454 0.93097 0.93242 1.19569 0.95888 0.95760 0.93243 1.21455 1.34301 1.08720 0.91282 0.94786 1.26013 0.97025 1.01008 0.95497 1.70078 1.49123 1.41635 0.98715 0.85673 0.79334 0.79476 0.78240 1.19283 1.21129 1.17080 1.21929 0.97123 0.97541 0.88910 1.60499 1.64168 1.05910 1.00905 1.20627 0.97422 0.96992 0.87079 1.21972 0.98170 0.98114 0.96550 1.23325 0.96903 0.99567 0.97686 1.21375 0.97897 0.97170 0.97229 1.22442 0.95704 1.01674 0.95988 1.21338 0.99397 0.96135 0.96471 0.95426 0.93763 0.91791 0.96556 0.96471 0.92664 0.95400 0.91118 0.84098 0.94553 0.90676 0.86061 0.90223 0.90542 0.90561 0.89963 0.91202 0.91017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.49 8.89 71.98 0.64 -3.85 16 2 C -0.07 -2.75 2.48 -10.79 -0.03 -2.78 16 3 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 4 C -0.01 -0.32 3.52 29.85 0.10 -0.21 16 5 C -0.52 -30.30 8.96 25.60 0.23 -30.07 16 6 H 0.03 2.19 7.30 -2.91 -0.02 2.17 16 7 C 0.00 0.03 5.47 84.65 0.46 0.50 16 8 N -0.95 -60.89 13.96 21.45 0.30 -60.59 16 9 Si 0.95 44.97 27.47 68.60 1.88 46.86 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 12 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 13 C 0.07 2.32 5.07 86.30 0.44 2.76 16 14 N -0.68 -18.55 5.94 -517.94 -3.08 -21.63 16 15 C 0.11 2.45 6.11 85.56 0.52 2.98 16 16 C -0.15 -3.05 5.67 -15.87 -0.09 -3.14 16 17 C -0.16 -3.03 10.58 26.26 0.28 -2.75 16 18 C -0.10 -1.53 6.81 30.53 0.21 -1.32 16 19 C -0.12 -1.70 7.19 31.70 0.23 -1.47 16 20 C -0.10 -1.69 6.76 30.53 0.21 -1.48 16 21 H 0.03 1.21 6.95 -2.39 -0.02 1.19 16 22 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 24 H 0.02 0.75 7.20 -2.38 -0.02 0.74 16 25 H 0.02 0.79 7.57 -2.39 -0.02 0.77 16 26 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 27 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.34 9.03 8.72 -89.69 -0.78 8.25 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 1.71 8.12 -2.39 -0.02 1.69 16 32 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 33 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -64.80 305.19 2.47 -62.33 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.16 Total: 13.89 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 3.20 Total: -40.85 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -2.78 Total: -82.22 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -64.80 2.47 -62.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602718847.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.291 kcal (2) G-P(sol) polarization free energy of solvation -64.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds