Wall clock time and date at job start Sun Mar 29 2020 21:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 5 5 C 1.50707 * 109.46966 * 64.99950 * 4 2 1 6 6 H 1.07991 * 119.99895 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99853 * 180.02562 * 5 4 2 8 8 N 1.31509 * 120.00109 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 119.99772 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47790 * 89.99598 * 9 7 5 11 11 H 1.48504 * 109.46869 * 209.99849 * 9 7 5 12 12 H 1.48508 * 109.46877 * 329.99425 * 9 7 5 13 13 C 1.52999 * 109.47317 * 119.99641 * 2 1 3 14 14 N 1.46904 * 109.47486 * 295.00613 * 13 2 1 15 15 C 1.46894 * 111.00353 * 179.97438 * 14 13 2 16 16 C 1.52993 * 109.47281 * 179.97438 * 15 14 13 17 17 C 1.54635 * 111.03983 * 287.02459 * 16 15 14 18 18 C 1.51100 * 104.72973 * 217.33407 * 17 16 15 19 19 C 1.30532 * 111.10029 * 16.43141 * 18 17 16 20 20 C 1.51099 * 111.10571 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 24 24 H 1.08996 * 109.47729 * 184.99759 * 4 2 1 25 25 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 26 26 H 0.97004 * 120.00063 * 180.02562 * 8 7 5 27 27 H 1.09006 * 109.47194 * 55.00274 * 13 2 1 28 28 H 1.08997 * 109.47756 * 174.99755 * 13 2 1 29 29 H 1.00906 * 110.99364 * 303.95285 * 14 13 2 30 30 H 1.09002 * 109.47086 * 300.00088 * 15 14 13 31 31 H 1.09005 * 109.47157 * 59.99929 * 15 14 13 32 32 H 1.08997 * 110.91665 * 51.03235 * 16 15 14 33 33 H 1.09005 * 110.38542 * 336.14498 * 17 16 15 34 34 H 1.08997 * 110.38908 * 98.51621 * 17 16 15 35 35 H 1.07999 * 124.45177 * 196.45738 * 18 17 16 36 36 H 1.08003 * 124.44486 * 180.02562 * 19 18 17 37 37 H 1.08999 * 110.38885 * 224.74717 * 20 19 18 38 38 H 1.09002 * 110.38472 * 102.37328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2491 5 6 1.6414 0.0571 -2.4765 6 1 1.0807 0.9745 -2.3757 7 6 1.9925 -0.4023 -3.7283 8 7 2.6757 -1.5193 -3.8511 9 14 1.4989 0.5628 -5.2496 10 1 2.5649 1.5417 -5.5824 11 1 1.3112 -0.3711 -6.3889 12 1 0.2281 1.2849 -4.9870 13 6 2.0400 -0.7212 1.2493 14 7 1.6513 0.0375 2.4457 15 6 2.1247 -0.6270 3.6673 16 6 1.7023 0.1910 4.8892 17 6 2.5430 1.4833 5.0098 18 6 2.7594 1.6637 6.4943 19 6 2.5031 0.5609 7.1440 20 6 2.0738 -0.5389 6.2010 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 3.1263 -0.7994 -1.2055 25 1 1.6054 -1.7198 -1.2951 26 1 2.9230 -1.8422 -4.7317 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7995 1.2057 29 1 1.9881 0.9874 2.3967 30 1 1.6904 -1.6248 3.7297 31 1 3.2116 -0.7049 3.6406 32 1 0.6369 0.4185 4.8559 33 1 3.4983 1.3638 4.4986 34 1 1.9957 2.3320 4.5999 35 1 3.0831 2.5843 6.9571 36 1 2.5870 0.4493 8.2150 37 1 1.2070 -1.0651 6.6009 38 1 2.8955 -1.2343 6.0297 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602720525.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:33 Heat of formation + Delta-G solvation = -28.425205 kcal Electronic energy + Delta-G solvation = -14926.890343 eV Core-core repulsion = 12574.544579 eV Total energy + Delta-G solvation = -2352.345765 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.90186 -38.06543 -35.55750 -33.91502 -30.75264 -29.05789 -28.71960 -26.85628 -25.14483 -23.64662 -21.21205 -20.50731 -19.58305 -18.47571 -17.15457 -16.81370 -16.56011 -15.86335 -15.50487 -14.83251 -14.61022 -14.16205 -13.87832 -13.58359 -13.31115 -13.09541 -12.96832 -12.77886 -12.62999 -12.25054 -12.18816 -12.16791 -11.99227 -11.84660 -11.60160 -11.45507 -11.08647 -10.86666 -10.53150 -9.74932 -9.32052 -8.17201 -6.26440 1.40638 1.40866 1.41770 1.52943 2.42541 3.16180 3.22019 3.73767 3.78447 4.07637 4.17353 4.32043 4.41610 4.48478 4.52791 4.61631 4.72991 4.86533 4.87386 4.90061 4.94109 5.00860 5.03026 5.14654 5.14845 5.29168 5.44041 5.47027 5.51294 5.56557 5.66907 5.81584 5.89071 6.04823 6.09564 6.31885 6.51702 6.89617 7.41865 8.94975 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066324 B = 0.004144 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.069444 B = 6754.448150 C = 6845.454817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 H 0.054 0.946 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.263 1.263 13 C 0.076 3.924 14 N -0.685 5.685 15 C 0.070 3.930 16 C -0.086 4.086 17 C -0.103 4.103 18 C -0.176 4.176 19 C -0.172 4.172 20 C -0.097 4.097 21 H 0.034 0.966 22 H 0.037 0.963 23 H 0.067 0.933 24 H -0.015 1.015 25 H -0.010 1.010 26 H 0.262 0.738 27 H 0.061 0.939 28 H 0.016 0.984 29 H 0.342 0.658 30 H 0.070 0.930 31 H 0.026 0.974 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.078 0.922 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.067 4.604 19.806 20.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.094 4.094 3 H 0.072 0.928 4 C -0.006 4.006 5 C -0.567 4.567 6 H 0.080 0.920 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.187 1.187 13 C -0.053 4.053 14 N -0.316 5.316 15 C -0.059 4.059 16 C -0.105 4.105 17 C -0.140 4.140 18 C -0.193 4.193 19 C -0.190 4.190 20 C -0.135 4.135 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.004 0.996 25 H 0.008 0.992 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.034 0.966 29 H 0.160 0.840 30 H 0.088 0.912 31 H 0.045 0.955 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.097 0.903 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.630 4.200 19.712 20.220 hybrid contribution 1.070 0.259 -1.161 1.601 sum -0.559 4.459 18.550 19.087 Atomic orbital electron populations 1.21482 0.94647 1.00364 1.00507 1.21018 0.96766 0.98409 0.93159 0.92797 1.19021 0.94057 0.94724 0.92798 1.21650 1.34444 1.08565 0.92072 0.92045 1.25969 0.95274 0.96101 1.02704 1.70103 1.40349 1.22962 1.24293 0.85490 0.79037 0.78356 0.78438 1.19871 1.20933 1.18699 1.21855 0.96449 0.97410 0.89587 1.60470 1.64048 1.05906 1.01127 1.21976 0.96930 0.98104 0.88912 1.22002 1.00346 0.94905 0.93266 1.21496 0.99609 0.97952 0.94913 1.23449 1.01252 0.99186 0.95459 1.23468 1.00557 0.95092 0.99833 1.21418 1.01424 0.97429 0.93194 0.94658 0.94370 0.91431 0.99633 0.99188 0.92940 0.92049 0.96558 0.83992 0.91187 0.95546 0.89886 0.91415 0.90880 0.84810 0.84418 0.90334 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.38 8.89 71.98 0.64 -3.74 16 2 C -0.07 -3.10 2.48 -10.80 -0.03 -3.13 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.69 4.45 29.85 0.13 1.82 16 5 C -0.53 -30.29 8.41 25.60 0.22 -30.08 16 6 H 0.06 3.38 7.06 -2.92 -0.02 3.36 16 7 C 0.00 -0.20 5.46 84.66 0.46 0.27 16 8 N -0.94 -57.84 13.29 21.45 0.28 -57.55 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.08 2.67 5.07 86.30 0.44 3.11 16 14 N -0.68 -19.27 5.96 -513.89 -3.06 -22.33 16 15 C 0.07 1.65 5.04 86.30 0.44 2.08 16 16 C -0.09 -1.71 3.36 -9.68 -0.03 -1.74 16 17 C -0.10 -1.93 5.86 30.53 0.18 -1.75 16 18 C -0.18 -2.94 10.78 26.26 0.28 -2.66 16 19 C -0.17 -2.73 10.77 26.26 0.28 -2.45 16 20 C -0.10 -1.65 6.38 30.54 0.19 -1.45 16 21 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 22 H 0.04 1.57 6.95 -2.39 -0.02 1.56 16 23 H 0.07 2.27 7.75 -2.38 -0.02 2.25 16 24 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 27 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 28 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.34 9.10 8.24 -89.69 -0.74 8.36 16 30 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.03 0.63 7.92 -2.38 -0.02 0.61 16 32 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.07 1.34 7.74 -2.38 -0.02 1.32 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 36 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.28 7.89 -2.39 -0.02 1.26 16 Total: -1.00 -62.95 306.46 2.71 -60.24 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 0.26 Total: 12.50 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.20 Total: -39.72 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.78 Total: -79.89 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -62.95 2.71 -60.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602720525.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.814 kcal (2) G-P(sol) polarization free energy of solvation -62.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds