Wall clock time and date at job start Sun Mar 29 2020 21:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 110.46024 * 2 1 4 4 C 1.54377 * 110.41014 * 237.58866 * 2 1 3 5 5 C 1.54258 * 105.06271 * 217.36669 * 4 2 1 6 6 C 1.54380 * 105.05938 * 0.02562 * 5 4 2 7 7 H 1.09005 * 110.41085 * 265.07518 * 6 5 4 8 8 C 1.52999 * 110.41505 * 142.63110 * 6 5 4 9 9 N 1.48552 * 110.41364 * 122.41568 * 2 1 3 10 10 C 1.46905 * 111.00058 * 277.81805 * 9 2 1 11 11 C 1.53002 * 109.47258 * 169.99716 * 10 9 2 12 12 C 1.50702 * 115.55007 * 325.58620 * 11 10 9 13 13 H 1.08001 * 120.00050 * 359.05467 * 12 11 10 14 14 C 1.37874 * 119.99982 * 179.05779 * 12 11 10 15 15 N 1.31516 * 120.00253 * 3.22334 * 14 12 11 16 16 Si 1.86797 * 120.00142 * 183.22120 * 14 12 11 17 17 H 1.48500 * 109.47426 * 265.00997 * 16 14 12 18 18 H 1.48503 * 109.46906 * 25.00867 * 16 14 12 19 19 H 1.48500 * 109.47437 * 145.00524 * 16 14 12 20 20 C 1.53004 * 117.51804 * 111.28080 * 11 10 9 21 21 C 1.53000 * 117.49895 * 179.91301 * 11 10 9 22 22 H 1.09000 * 109.47063 * 297.58836 * 1 2 3 23 23 H 1.09000 * 109.46981 * 57.58570 * 1 2 3 24 24 H 1.08991 * 109.47056 * 177.58378 * 1 2 3 25 25 H 1.09003 * 110.32681 * 336.26396 * 4 2 1 26 26 H 1.09002 * 110.32624 * 98.37037 * 4 2 1 27 27 H 1.09000 * 110.32526 * 118.89570 * 5 4 2 28 28 H 1.09002 * 110.32787 * 241.10396 * 5 4 2 29 29 H 1.09001 * 109.46617 * 304.82692 * 8 6 5 30 30 H 1.08995 * 109.46977 * 64.82589 * 8 6 5 31 31 H 1.08999 * 109.47261 * 184.83106 * 8 6 5 32 32 H 1.08999 * 109.46577 * 49.99988 * 10 9 2 33 33 H 1.08993 * 109.46947 * 289.99997 * 10 9 2 34 34 H 0.96992 * 119.99956 * 179.97438 * 15 14 12 35 35 H 1.08996 * 117.49894 * 214.97175 * 20 11 10 36 36 H 1.09002 * 117.49583 * 359.97438 * 20 11 10 37 37 H 1.08998 * 117.49587 * 359.97438 * 21 11 10 38 38 H 1.09000 * 117.49945 * 144.97615 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9110 1.0212 0.0000 4 6 2.0684 -0.7755 -1.2215 5 6 3.3177 -1.5188 -0.7055 6 6 3.4288 -1.1304 0.7845 7 1 4.1068 -0.2859 0.9077 8 6 3.9059 -2.3247 1.6132 9 7 2.0481 -0.7463 1.1753 10 6 2.0569 0.1013 2.3751 11 6 2.3548 -0.7587 3.6050 12 6 1.7993 -2.1591 3.5689 13 1 1.2206 -2.4887 2.7187 14 6 2.0297 -3.0195 4.6213 15 7 2.6799 -2.5989 5.6843 16 14 1.4185 -4.7826 4.5373 17 1 0.0975 -4.8812 5.2085 18 1 1.2835 -5.1926 3.1164 19 1 2.3886 -5.6760 5.2201 20 6 3.6994 -0.5500 4.3047 21 6 2.4096 -0.0552 4.9625 22 1 -0.3633 0.4759 0.9108 23 1 -0.3633 0.5509 -0.8676 24 1 -0.3633 -1.0267 -0.0433 25 1 1.3235 -1.4880 -1.5760 26 1 2.3399 -0.0842 -2.0193 27 1 3.1861 -2.5961 -0.8068 28 1 4.2041 -1.1922 -1.2494 29 1 3.2414 -3.1722 1.4450 30 1 4.9193 -2.5926 1.3144 31 1 3.8968 -2.0602 2.6706 32 1 1.0829 0.5765 2.4913 33 1 2.8252 0.8677 2.2729 34 1 2.8416 -3.2041 6.4248 35 1 4.1820 -1.4255 4.7390 36 1 4.3722 0.1999 3.8886 37 1 2.2338 1.0204 4.9794 38 1 2.0434 -0.6050 5.8295 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602786225.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:30 Heat of formation + Delta-G solvation = 34.036556 kcal Electronic energy + Delta-G solvation = -16659.210531 eV Core-core repulsion = 14309.573312 eV Total energy + Delta-G solvation = -2349.637219 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.98452 -36.24317 -31.98701 -31.80471 -30.76479 -27.70033 -25.80041 -24.33062 -23.24836 -20.67090 -19.75181 -19.59185 -18.77758 -16.08968 -15.25121 -14.76607 -14.25271 -14.16699 -13.35051 -13.19507 -12.98580 -12.51295 -12.07923 -11.63024 -11.46664 -11.23802 -11.05447 -10.87953 -10.84531 -10.57493 -10.36411 -10.35272 -10.11786 -10.06866 -9.92425 -9.66575 -9.30020 -8.56703 -8.20156 -7.89134 -7.56310 -5.81359 -3.79922 3.36632 3.44574 3.49729 4.52097 4.59690 5.04174 5.16854 5.24287 5.39185 5.60402 5.78319 5.89026 5.89614 6.00001 6.05533 6.13315 6.25387 6.28844 6.35242 6.38420 6.50551 6.58781 6.63943 6.67579 6.69956 6.83371 7.08903 7.12385 7.27740 7.36184 7.61632 7.76028 7.87457 8.02419 8.19068 8.30782 8.71395 9.19147 9.71535 11.15581 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.026977 B = 0.010875 C = 0.009870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.670497 B = 2574.181097 C = 2836.178981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.051 3.949 3 H 0.038 0.962 4 C -0.117 4.117 5 C -0.123 4.123 6 C 0.074 3.926 7 H 0.034 0.966 8 C -0.145 4.145 9 N -0.475 5.475 10 C 0.091 3.909 11 C 0.027 3.973 12 C -0.435 4.435 13 H 0.075 0.925 14 C 0.048 3.952 15 N -0.889 5.889 16 Si 0.889 3.111 17 H -0.285 1.285 18 H -0.273 1.273 19 H -0.290 1.290 20 C -0.194 4.194 21 C -0.191 4.191 22 H 0.054 0.946 23 H 0.047 0.953 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.026 0.974 31 H 0.109 0.891 32 H 0.059 0.941 33 H 0.011 0.989 34 H 0.254 0.746 35 H 0.108 0.892 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.065 3.586 -9.983 10.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.058 4.058 3 H 0.056 0.944 4 C -0.155 4.155 5 C -0.161 4.161 6 C -0.034 4.034 7 H 0.052 0.948 8 C -0.202 4.202 9 N -0.199 5.199 10 C -0.037 4.037 11 C 0.027 3.973 12 C -0.473 4.473 13 H 0.093 0.907 14 C -0.151 4.151 15 N -0.529 5.529 16 Si 0.718 3.282 17 H -0.212 1.212 18 H -0.198 1.198 19 H -0.216 1.216 20 C -0.231 4.231 21 C -0.230 4.230 22 H 0.073 0.927 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.030 0.970 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.342 3.033 -9.685 10.155 hybrid contribution 0.322 -0.062 -0.021 0.328 sum -0.021 2.972 -9.707 10.151 Atomic orbital electron populations 1.21665 0.94391 1.02224 1.00643 1.22620 0.95916 0.95373 0.91881 0.94392 1.22313 0.97785 0.98763 0.96668 1.22413 0.96861 1.00797 0.96038 1.22473 0.89856 0.97812 0.93261 0.94759 1.22096 0.97062 0.96764 1.04273 1.65300 1.17553 1.36046 1.01039 1.21772 0.98439 0.92806 0.90668 1.18979 0.96377 0.94850 0.87141 1.20631 1.30022 0.93784 1.02837 0.90701 1.25019 0.95992 0.98430 0.95636 1.70023 1.42015 1.34466 1.06397 0.86613 0.78255 0.85289 0.78088 1.21189 1.19775 1.21643 1.22858 0.91228 1.01609 1.07438 1.22897 1.03419 0.94893 1.01782 0.92680 0.93395 0.91879 0.91369 0.92450 0.91222 0.92499 0.92483 0.95542 0.87231 0.92279 0.97042 0.93524 0.87403 0.94561 0.94520 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.94 9.36 37.16 0.35 -1.59 16 2 C 0.05 0.82 2.87 -66.08 -0.19 0.63 16 3 H 0.04 0.60 8.00 -51.93 -0.42 0.19 16 4 C -0.12 -1.66 6.55 -25.35 -0.17 -1.83 16 5 C -0.12 -1.89 6.55 -25.35 -0.17 -2.05 16 6 C 0.07 1.38 2.86 -66.08 -0.19 1.19 16 7 H 0.03 0.65 7.75 -51.93 -0.40 0.25 16 8 C -0.14 -2.97 7.92 37.16 0.29 -2.67 16 9 N -0.48 -9.29 3.71 -214.38 -0.80 -10.08 16 10 C 0.09 1.93 4.91 -3.82 -0.02 1.91 16 11 C 0.03 0.66 1.41 -155.66 -0.22 0.44 16 12 C -0.43 -11.42 6.13 -34.44 -0.21 -11.63 16 13 H 0.07 2.02 7.24 -52.49 -0.38 1.64 16 14 C 0.05 1.30 5.27 -17.82 -0.09 1.20 16 15 N -0.89 -24.55 8.60 55.43 0.48 -24.07 16 16 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 C -0.19 -4.75 7.59 -26.72 -0.20 -4.96 16 21 C -0.19 -4.78 9.38 -26.73 -0.25 -5.03 16 22 H 0.05 0.85 7.28 -51.93 -0.38 0.47 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 25 H 0.07 0.93 7.82 -51.93 -0.41 0.53 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 1.07 7.82 -51.93 -0.41 0.67 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 1.23 7.97 -51.93 -0.41 0.81 16 30 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.11 2.57 3.38 -51.93 -0.18 2.40 16 32 H 0.06 1.23 7.16 -51.93 -0.37 0.85 16 33 H 0.01 0.24 7.53 -51.93 -0.39 -0.15 16 34 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.11 2.91 6.25 -51.93 -0.32 2.59 16 36 H 0.04 0.83 8.05 -51.93 -0.42 0.41 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.11 3.10 6.24 -51.93 -0.32 2.78 16 LS Contribution 283.56 15.07 4.27 4.27 Total: -1.00 -26.81 283.56 -8.61 -35.42 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -6.47 Total: 2.56 kcal Atomic # 6 Polarization: -23.32 SS G_CDS: -1.07 Total: -24.38 kcal Atomic # 7 Polarization: -33.84 SS G_CDS: -0.32 Total: -34.16 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -26.81 -8.61 -35.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602786225.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.459 kcal (2) G-P(sol) polarization free energy of solvation -26.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds