Wall clock time and date at job start Sun Mar 29 2020 21:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47201 * 2 1 4 4 C 1.53000 * 109.46948 * 240.00642 * 2 1 3 5 5 C 1.52996 * 117.52048 * 356.28196 * 4 2 1 6 6 C 1.53002 * 60.00165 * 107.48427 * 5 4 2 7 7 N 1.46901 * 109.47395 * 120.00530 * 2 1 3 8 8 C 1.46901 * 110.99638 * 295.00336 * 7 2 1 9 9 C 1.52999 * 109.46954 * 286.51573 * 8 7 2 10 10 C 1.50697 * 109.47356 * 185.29374 * 9 8 7 11 11 H 1.08002 * 119.99972 * 0.02562 * 10 9 8 12 12 C 1.37872 * 120.00530 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99712 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00422 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47097 * 60.00213 * 14 12 10 16 16 H 1.48496 * 109.47204 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.46801 * 300.00264 * 14 12 10 18 18 C 1.46905 * 110.99782 * 58.95322 * 7 2 1 19 19 C 1.53001 * 117.49636 * 245.67736 * 18 7 2 20 20 C 1.52995 * 117.49639 * 177.05597 * 18 7 2 21 21 H 1.08997 * 109.47164 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47334 * 299.99637 * 1 2 3 23 23 H 1.09005 * 109.46940 * 59.99279 * 1 2 3 24 24 H 1.09005 * 115.54763 * 210.57759 * 4 2 1 25 25 H 1.08997 * 117.50199 * 214.96694 * 5 4 2 26 26 H 1.08999 * 117.49611 * 359.97438 * 5 4 2 27 27 H 1.09001 * 117.49660 * 252.51446 * 6 5 4 28 28 H 1.09003 * 117.52360 * 107.47952 * 6 5 4 29 29 H 1.08994 * 109.47601 * 46.51736 * 8 7 2 30 30 H 1.09001 * 109.47094 * 166.52086 * 8 7 2 31 31 H 1.09005 * 109.47061 * 305.29570 * 9 8 7 32 32 H 1.09001 * 109.47251 * 65.29451 * 9 8 7 33 33 H 0.97004 * 119.99701 * 179.97438 * 13 12 10 34 34 H 1.09003 * 115.54943 * 31.37795 * 18 7 2 35 35 H 1.08997 * 117.50147 * 359.97438 * 19 18 7 36 36 H 1.09000 * 117.49832 * 145.02274 * 19 18 7 37 37 H 1.09005 * 117.49488 * 214.97767 * 20 18 7 38 38 H 1.09000 * 117.50221 * 359.97025 * 20 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 0.9990 -1.3561 -2.1735 6 6 1.7330 -0.0855 -2.6068 7 7 2.0197 -0.6926 1.1994 8 6 1.6487 0.0390 2.4180 9 6 2.5154 1.2935 2.5435 10 6 2.2266 1.9744 3.8565 11 1 1.4980 1.5541 4.5340 12 6 2.8931 3.1333 4.1935 13 7 3.7807 3.6449 3.3687 14 14 2.5356 3.9769 5.8213 15 1 2.8438 3.0482 6.9383 16 1 3.3767 5.1946 5.9431 17 1 1.1015 4.3588 5.8764 18 6 1.5284 -2.0763 1.2457 19 6 0.5645 -2.4461 2.3750 20 6 2.0064 -2.9572 2.4017 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8900 24 1 2.9949 -1.2349 -1.1387 25 1 1.2691 -2.2876 -2.6709 26 1 -0.0495 -1.2606 -1.8912 27 1 1.1673 0.8462 -2.6098 28 1 2.4861 -0.1807 -3.3890 29 1 0.5988 0.3266 2.3637 30 1 1.8060 -0.5997 3.2872 31 1 3.5681 1.0135 2.5033 32 1 2.2891 1.9750 1.7234 33 1 4.2493 4.4605 3.6057 34 1 1.3771 -2.5541 0.2778 35 1 0.2953 -1.6630 3.0837 36 1 -0.2211 -3.1675 2.1501 37 1 2.1693 -4.0149 2.1943 38 1 2.6858 -2.5104 3.1275 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603848888.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:49 Heat of formation + Delta-G solvation = 34.547075 kcal Electronic energy + Delta-G solvation = -15859.790312 eV Core-core repulsion = 13510.175230 eV Total energy + Delta-G solvation = -2349.615082 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.72929 -38.05382 -35.76583 -34.49356 -31.85734 -29.49501 -26.88212 -25.24593 -23.51193 -23.16185 -22.64097 -21.52621 -19.28195 -18.57894 -17.72651 -16.60762 -16.55519 -16.20071 -15.59851 -14.79788 -14.62194 -14.29924 -14.05919 -13.65485 -13.26173 -12.85251 -12.79900 -12.72472 -12.56019 -12.28533 -12.19050 -12.00843 -11.84650 -11.47836 -11.34052 -11.26352 -11.22185 -10.94467 -10.70665 -10.51035 -8.88814 -8.20486 -6.32420 1.38440 1.41991 1.49918 2.38948 2.77317 3.02239 3.12453 3.22744 3.78470 4.03333 4.08323 4.13523 4.15369 4.24136 4.31078 4.37387 4.44543 4.57252 4.62641 4.81317 4.83935 4.90240 4.97173 5.01352 5.07342 5.12569 5.20525 5.31570 5.32705 5.32934 5.39502 5.46315 5.67157 5.79728 6.15190 6.35631 6.43599 6.84727 7.36699 8.91493 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.029280 B = 0.007274 C = 0.006308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.068624 B = 3848.522413 C = 4437.892865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.112 3.888 3 H 0.052 0.948 4 C -0.154 4.154 5 C -0.167 4.167 6 C -0.177 4.177 7 N -0.515 5.515 8 C 0.077 3.923 9 C 0.041 3.959 10 C -0.546 4.546 11 H 0.058 0.942 12 C 0.002 3.998 13 N -0.931 5.931 14 Si 0.966 3.034 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.266 1.266 18 C 0.024 3.976 19 C -0.217 4.217 20 C -0.177 4.177 21 H 0.076 0.924 22 H 0.039 0.961 23 H 0.070 0.930 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.030 0.970 30 H 0.060 0.940 31 H -0.012 1.012 32 H -0.012 1.012 33 H 0.264 0.736 34 H 0.135 0.865 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.302 -11.815 -8.653 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 H 0.070 0.930 4 C -0.172 4.172 5 C -0.203 4.203 6 C -0.215 4.215 7 N -0.236 5.236 8 C -0.050 4.050 9 C 0.004 3.996 10 C -0.584 4.584 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.790 3.210 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.191 1.191 18 C -0.085 4.085 19 C -0.256 4.256 20 C -0.215 4.215 21 H 0.095 0.905 22 H 0.058 0.942 23 H 0.088 0.912 24 H 0.118 0.882 25 H 0.125 0.875 26 H 0.122 0.878 27 H 0.108 0.892 28 H 0.122 0.878 29 H 0.048 0.952 30 H 0.079 0.921 31 H 0.006 0.994 32 H 0.006 0.994 33 H 0.072 0.928 34 H 0.153 0.847 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.653 -11.672 -8.706 16.009 hybrid contribution -0.510 0.981 1.013 1.500 sum -7.164 -10.690 -7.693 14.993 Atomic orbital electron populations 1.22448 0.96311 1.02678 1.01636 1.21109 0.93273 0.96508 0.88735 0.92952 1.22148 1.00594 1.04535 0.89944 1.23224 0.97896 0.97092 1.02132 1.23012 1.03914 0.97573 0.96989 1.62005 1.58151 1.01190 1.02247 1.22064 0.96801 0.94938 0.91167 1.18860 0.94103 0.91818 0.94855 1.21584 1.23041 1.09324 1.04456 0.92328 1.25970 0.94667 0.97935 1.01037 1.70117 1.26935 1.21682 1.38364 0.85496 0.78510 0.77778 0.79236 1.19139 1.20690 1.19097 1.22697 1.01131 0.89781 0.94899 1.23552 0.93899 1.04340 1.03794 1.23099 0.96752 1.00121 1.01536 0.90547 0.94194 0.91152 0.88162 0.87468 0.87750 0.89197 0.87791 0.95177 0.92138 0.99396 0.99412 0.92757 0.84733 0.90156 0.86895 0.86315 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.95 7.25 71.98 0.52 -4.43 16 2 C 0.11 3.77 2.62 44.92 0.12 3.89 16 3 H 0.05 2.17 6.71 -2.39 -0.02 2.15 16 4 C -0.15 -4.14 4.60 -10.79 -0.05 -4.19 16 5 C -0.17 -3.30 9.18 30.59 0.28 -3.02 16 6 C -0.18 -3.98 9.95 30.60 0.30 -3.67 16 7 N -0.51 -19.14 4.65 -845.89 -3.94 -23.07 16 8 C 0.08 3.40 3.43 86.30 0.30 3.69 16 9 C 0.04 2.29 4.95 29.85 0.15 2.44 16 10 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 11 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 12 C 0.00 0.12 5.46 84.65 0.46 0.58 16 13 N -0.93 -58.24 13.29 21.45 0.28 -57.96 16 14 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 C 0.02 0.70 4.38 44.91 0.20 0.90 16 19 C -0.22 -5.87 9.55 30.59 0.29 -5.58 16 20 C -0.18 -4.91 9.92 30.59 0.30 -4.61 16 21 H 0.08 1.89 6.24 -2.39 -0.01 1.88 16 22 H 0.04 1.31 6.28 -2.39 -0.01 1.30 16 23 H 0.07 1.77 7.18 -2.38 -0.02 1.75 16 24 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 25 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.10 1.95 5.82 -2.39 -0.01 1.94 16 27 H 0.09 2.06 7.92 -2.39 -0.02 2.04 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.03 1.31 5.73 -2.39 -0.01 1.29 16 30 H 0.06 2.67 5.69 -2.39 -0.01 2.65 16 31 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 32 H -0.01 -0.75 6.94 -2.39 -0.02 -0.76 16 33 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.14 3.34 6.75 -2.39 -0.02 3.33 16 35 H 0.08 2.53 6.00 -2.39 -0.01 2.52 16 36 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 38 H 0.07 2.40 7.52 -2.39 -0.02 2.38 16 Total: -1.00 -65.56 292.88 2.51 -63.05 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: 1.02 Total: 16.68 kcal Atomic # 6 Polarization: -48.96 SS G_CDS: 3.11 Total: -45.85 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.65 Total: -81.03 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.56 2.51 -63.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603848888.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.599 kcal (2) G-P(sol) polarization free energy of solvation -65.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds