Wall clock time and date at job start Sun Mar 29 2020 22:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47192 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47014 * 185.83712 * 3 2 1 5 5 C 1.37099 * 119.99882 * 86.98849 * 4 3 2 6 6 H 1.07999 * 119.99986 * 174.41400 * 5 4 3 7 7 C 1.38956 * 120.00017 * 354.14261 * 5 4 3 8 8 N 1.31410 * 119.99976 * 334.00719 * 7 5 4 9 9 Si 1.86799 * 120.00170 * 154.00913 * 7 5 4 10 10 H 1.48499 * 109.46997 * 59.99850 * 9 7 5 11 11 H 1.48499 * 109.47200 * 179.97438 * 9 7 5 12 12 H 1.48507 * 109.47213 * 300.00068 * 9 7 5 13 13 C 1.34769 * 120.00155 * 266.98598 * 4 3 2 14 14 O 1.21292 * 120.00194 * 179.97438 * 13 4 3 15 15 C 1.50702 * 119.99914 * 0.02562 * 13 4 3 16 16 H 1.08996 * 110.43894 * 300.69686 * 15 13 4 17 17 C 1.54816 * 110.48766 * 178.15077 * 15 13 4 18 18 C 1.55216 * 101.98833 * 220.52067 * 17 15 13 19 19 O 1.44377 * 103.56915 * 36.88271 * 18 17 15 20 20 C 1.43744 * 106.97743 * 320.01142 * 19 18 17 21 21 H 1.09002 * 109.47430 * 65.83880 * 3 2 1 22 22 H 1.09005 * 109.47089 * 305.83980 * 3 2 1 23 23 H 0.97001 * 120.00094 * 179.97438 * 8 7 5 24 24 H 1.08996 * 110.91007 * 338.64774 * 17 15 13 25 25 H 1.09008 * 110.90366 * 102.24548 * 17 15 13 26 26 H 1.09008 * 110.52338 * 278.38748 * 18 17 15 27 27 H 1.09007 * 110.78107 * 155.50758 * 18 17 15 28 28 H 1.08991 * 109.87961 * 267.09101 * 20 19 18 29 29 H 1.08996 * 109.88098 * 145.93207 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 7 3.0956 1.3749 0.1405 5 6 3.2651 1.9180 1.3879 6 1 3.7089 2.8968 1.4949 7 6 2.8605 1.2116 2.5140 8 7 1.9001 0.3197 2.4202 9 14 3.6819 1.5299 4.1612 10 1 3.4917 2.9524 4.5425 11 1 3.0731 0.6551 5.1952 12 1 5.1337 1.2357 4.0555 13 6 3.3778 2.1053 -0.9565 14 8 3.7811 3.2433 -0.8402 15 6 3.1911 1.5085 -2.3276 16 1 3.8074 0.6168 -2.4418 17 6 3.5339 2.5481 -3.4224 18 6 2.4189 2.2915 -4.4712 19 8 1.2587 1.9918 -3.6657 20 6 1.7069 1.1733 -2.5724 21 1 2.9715 -0.4198 -0.9376 22 1 2.9716 -0.6009 0.8331 23 1 1.6179 -0.1737 3.2062 24 1 3.4714 3.5625 -3.0287 25 1 4.5202 2.3566 -3.8453 26 1 2.6770 1.4419 -5.1034 27 1 2.2460 3.1809 -5.0773 28 1 1.6028 0.1197 -2.8312 29 1 1.1242 1.3969 -1.6788 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604544364.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:09 Heat of formation + Delta-G solvation = -34.659712 kcal Electronic energy + Delta-G solvation = -15806.284489 eV Core-core repulsion = 13116.576276 eV Total energy + Delta-G solvation = -2689.708213 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86108 -37.85677 -35.90476 -34.36024 -32.24425 -31.47522 -29.02227 -27.43671 -25.10054 -22.77684 -21.72924 -19.03397 -18.03202 -16.81133 -16.29919 -15.88270 -15.77672 -14.75645 -14.45900 -14.09206 -13.41111 -13.17585 -12.89490 -12.51596 -12.10096 -11.75731 -11.62216 -11.33016 -11.18717 -11.05842 -10.94378 -10.59422 -10.52213 -10.43723 -10.25942 -9.49462 -9.27818 -8.61019 -8.19223 -6.59194 -3.99729 3.07639 3.19547 3.22199 3.47179 3.73267 3.94600 4.06807 4.25734 4.66312 4.78811 4.82443 5.18179 5.20272 5.35152 5.38274 5.52302 5.64619 5.86932 5.91809 6.02581 6.10514 6.25017 6.49319 6.51657 7.09972 7.41865 7.79873 8.21868 8.74213 8.93652 9.13970 9.66334 10.46147 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.038073 B = 0.009982 C = 0.008344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.260962 B = 2804.374419 C = 3354.994787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.248 3.752 3 C 0.217 3.783 4 N -0.441 5.441 5 C -0.319 4.319 6 H 0.113 0.887 7 C 0.034 3.966 8 N -0.874 5.874 9 Si 0.927 3.073 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.271 1.271 13 C 0.459 3.541 14 O -0.570 6.570 15 C -0.141 4.141 16 H 0.099 0.901 17 C -0.136 4.136 18 C 0.044 3.956 19 O -0.376 6.376 20 C 0.053 3.947 21 H 0.083 0.917 22 H 0.130 0.870 23 H 0.276 0.724 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.061 0.939 29 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.743 -3.335 -7.821 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.070 4.070 3 C 0.089 3.911 4 N -0.161 5.161 5 C -0.445 4.445 6 H 0.130 0.870 7 C -0.170 4.170 8 N -0.512 5.512 9 Si 0.754 3.246 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.197 1.197 13 C 0.247 3.753 14 O -0.453 6.453 15 C -0.163 4.163 16 H 0.117 0.883 17 C -0.174 4.174 18 C -0.033 4.033 19 O -0.295 6.295 20 C -0.025 4.025 21 H 0.100 0.900 22 H 0.147 0.853 23 H 0.086 0.914 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.079 0.921 29 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.954 -2.826 -7.630 8.656 hybrid contribution 0.851 -0.185 1.105 1.407 sum 3.805 -3.011 -6.524 8.131 Atomic orbital electron populations 1.80933 1.13427 1.08000 1.12640 1.29089 0.95258 0.92824 0.89792 1.18932 0.81986 0.87183 1.02972 1.43713 1.56189 1.10200 1.06007 1.19744 1.39534 1.04942 0.80297 0.86972 1.25230 0.94945 0.96679 1.00126 1.69864 1.22997 1.26549 1.31825 0.85968 0.79646 0.78650 0.80386 1.19781 1.20985 1.19651 1.19691 0.84394 0.86437 0.84782 1.90525 1.50543 1.18224 1.86018 1.22635 0.97638 1.00296 0.95698 0.88315 1.23085 0.98680 1.01427 0.94193 1.23622 0.85562 1.00206 0.93869 1.88877 1.30932 1.70949 1.38743 1.23433 0.93602 0.94487 0.90943 0.89964 0.85287 0.91363 0.88515 0.90252 0.92539 0.89178 0.92118 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.17 18.36 42.15 0.77 -10.39 15 2 C 0.25 5.45 10.28 -20.76 -0.21 5.24 15 3 C 0.22 4.25 4.77 -6.83 -0.03 4.21 15 4 N -0.44 -10.19 2.58 -117.93 -0.30 -10.50 15 5 C -0.32 -8.18 9.43 -14.93 -0.14 -8.32 15 6 H 0.11 3.06 7.30 -52.49 -0.38 2.68 15 7 C 0.03 0.83 4.92 -17.47 -0.09 0.74 15 8 N -0.87 -21.60 9.02 55.50 0.50 -21.10 15 9 Si 0.93 19.43 29.63 -169.99 -5.04 14.40 15 10 H -0.27 -5.86 7.11 56.52 0.40 -5.46 15 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 12 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 13 C 0.46 10.29 6.82 -10.99 -0.07 10.21 15 14 O -0.57 -14.76 15.03 5.55 0.08 -14.68 15 15 C -0.14 -2.41 2.50 -90.23 -0.23 -2.64 15 16 H 0.10 1.36 7.40 -51.93 -0.38 0.98 15 17 C -0.14 -2.09 6.53 -24.60 -0.16 -2.25 15 18 C 0.04 0.61 7.72 38.33 0.30 0.91 15 19 O -0.38 -6.83 11.52 -35.23 -0.41 -7.23 15 20 C 0.05 0.94 5.44 37.74 0.21 1.15 15 21 H 0.08 1.23 6.06 -51.93 -0.31 0.91 15 22 H 0.13 2.57 6.37 -51.93 -0.33 2.24 15 23 H 0.28 6.60 8.31 -40.82 -0.34 6.26 15 24 H 0.10 1.75 6.90 -51.93 -0.36 1.39 15 25 H 0.08 1.00 8.14 -51.92 -0.42 0.58 15 26 H 0.06 0.64 8.14 -51.92 -0.42 0.22 15 27 H 0.09 1.08 8.14 -51.93 -0.42 0.66 15 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 29 H 0.09 1.94 5.02 -51.93 -0.26 1.68 15 LS Contribution 245.77 15.07 3.70 3.70 Total: -1.00 -30.59 245.77 -3.97 -34.57 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -2.86 Total: 1.97 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.43 Total: 9.26 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.97 Total: -41.98 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.32 Total: -21.91 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.04 Total: 14.40 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -30.59 -3.97 -34.57 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604544364.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.092 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds