Wall clock time and date at job start Sun Mar 29 2020 22:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00163 * 2 1 4 4 H 1.48503 * 109.47119 * 269.99872 * 3 2 1 5 5 H 1.48493 * 109.46977 * 30.00346 * 3 2 1 6 6 H 1.48505 * 109.46851 * 150.00244 * 3 2 1 7 7 C 1.37879 * 119.99973 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00593 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47249 * 179.97438 * 10 9 7 12 12 N 1.46491 * 109.47438 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99898 * 179.97438 * 12 11 10 14 14 O 1.21683 * 120.00090 * 0.02562 * 13 12 11 15 15 C 1.46725 * 119.99562 * 179.97438 * 13 12 11 16 16 C 1.36344 * 126.63753 * 179.97438 * 15 13 12 17 17 N 1.33698 * 107.44973 * 179.74164 * 16 15 13 18 18 C 1.30615 * 108.99562 * 0.24745 * 17 16 15 19 19 O 1.33670 * 109.15519 * 359.97438 * 18 17 16 20 20 H 0.97004 * 119.99831 * 359.97438 * 1 2 3 21 21 H 1.08993 * 109.47090 * 60.00098 * 9 7 2 22 22 H 1.09001 * 109.46797 * 299.99985 * 9 7 2 23 23 H 1.09008 * 109.47493 * 60.00169 * 10 9 7 24 24 H 1.08993 * 109.47630 * 299.99963 * 10 9 7 25 25 H 1.09000 * 109.46699 * 59.99539 * 11 10 9 26 26 H 1.09001 * 109.46804 * 300.00321 * 11 10 9 27 27 H 0.97000 * 120.00053 * 0.02562 * 12 11 10 28 28 H 1.08002 * 126.27901 * 0.02562 * 16 15 13 29 29 H 1.07996 * 125.42194 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0027 11 6 1.4801 -4.9871 -0.0033 12 7 2.4320 -6.1006 -0.0037 13 6 1.9827 -7.3713 -0.0036 14 8 0.7864 -7.5937 -0.0038 15 6 2.9362 -8.4865 -0.0046 16 6 2.6334 -9.8159 -0.0042 17 7 3.7879 -10.4901 -0.0111 18 6 4.7779 -9.6380 -0.0104 19 8 4.2865 -8.3949 -0.0035 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5563 -0.8919 22 1 0.6239 -2.5575 0.8880 23 1 2.8718 -3.6052 0.8874 24 1 2.8718 -3.6036 -0.8926 25 1 0.8531 -5.0443 -0.8931 26 1 0.8538 -5.0454 0.8869 27 1 3.3857 -5.9234 -0.0032 28 1 1.6426 -10.2457 -0.0035 29 1 5.8264 -9.8966 -0.0154 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611148583.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:20 Heat of formation + Delta-G solvation = -27.662684 kcal Electronic energy + Delta-G solvation = -14273.704148 eV Core-core repulsion = 11584.299349 eV Total energy + Delta-G solvation = -2689.404799 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.65661 -39.47853 -35.72012 -35.08806 -33.39401 -31.53783 -30.47417 -26.98392 -24.41808 -23.09083 -22.58130 -20.93192 -20.39390 -18.50431 -17.06249 -16.97544 -16.49862 -15.68638 -15.30609 -14.58568 -14.47413 -14.07153 -13.88722 -13.58964 -12.33937 -11.91369 -11.84726 -11.78367 -11.15771 -10.94066 -10.82118 -10.66468 -10.37329 -9.93842 -9.49949 -9.42521 -9.17160 -8.94743 -8.40664 -6.05204 -4.08507 0.62321 2.20249 2.23271 3.01653 3.19764 3.28734 3.35322 3.38082 3.87965 4.41455 4.69007 4.70103 5.23563 5.30694 5.31985 5.60083 5.66990 5.91381 6.05757 6.24520 6.50631 6.69778 6.91704 7.18390 7.47628 7.58897 7.70619 7.92841 8.01923 8.33871 8.97938 9.55906 11.06010 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.067442 B = 0.004216 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.069866 B = 6639.755224 C = 7029.075144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.114 3.886 12 N -0.710 5.710 13 C 0.600 3.400 14 O -0.518 6.518 15 C -0.101 4.101 16 C 0.045 3.955 17 N -0.496 5.496 18 C 0.195 3.805 19 O -0.191 6.191 20 H 0.261 0.739 21 H 0.020 0.980 22 H 0.020 0.980 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.404 0.596 28 H 0.197 0.803 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.363 -16.253 -0.012 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.008 4.008 12 N -0.359 5.359 13 C 0.384 3.616 14 O -0.396 6.396 15 C -0.156 4.156 16 C -0.097 4.097 17 N -0.224 5.224 18 C -0.030 4.030 19 O -0.076 6.076 20 H 0.071 0.929 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.239 0.761 28 H 0.214 0.786 29 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 8.455 -16.837 -0.010 18.841 hybrid contribution 0.963 1.655 -0.005 1.915 sum 9.418 -15.183 -0.016 17.866 Atomic orbital electron populations 1.69961 1.06058 1.26742 1.50442 1.25033 0.94876 0.99343 0.95231 0.86569 0.79786 0.83375 0.78110 1.20643 1.21178 1.19902 1.21190 0.93002 0.90898 1.51090 0.92622 1.19033 0.93811 0.90774 0.97754 1.21913 0.99857 0.93087 1.01104 1.21807 0.91726 0.84702 1.02561 1.46170 1.11539 1.05400 1.72839 1.16417 0.86080 0.81318 0.77835 1.90907 1.13826 1.83912 1.50933 1.23439 0.80483 0.97952 1.13760 1.23612 0.98639 0.88683 0.98808 1.70446 0.98505 1.34751 1.18688 1.28408 1.01258 0.75926 0.97449 1.84517 1.20330 1.34089 1.68693 0.92888 0.96186 0.96167 0.92560 0.92554 0.91129 0.91137 0.76143 0.78590 0.72857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.51 13.29 55.43 0.74 -25.77 15 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 15 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 15 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 15 10 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 15 11 C 0.11 1.92 5.67 -4.05 -0.02 1.90 15 12 N -0.71 -10.11 5.55 -61.61 -0.34 -10.45 15 13 C 0.60 8.92 7.79 -12.83 -0.10 8.82 15 14 O -0.52 -9.28 16.89 5.20 0.09 -9.19 15 15 C -0.10 -1.25 7.18 -36.84 -0.26 -1.51 15 16 C 0.05 0.52 11.66 -17.42 -0.20 0.32 15 17 N -0.50 -5.32 11.26 -14.67 -0.17 -5.49 15 18 C 0.19 1.53 13.21 52.25 0.69 2.22 15 19 O -0.19 -1.94 10.57 4.42 0.05 -1.89 15 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 15 21 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 22 H 0.02 0.53 8.14 -51.93 -0.42 0.11 15 23 H 0.06 1.03 8.14 -51.92 -0.42 0.60 15 24 H 0.06 1.03 8.14 -51.93 -0.42 0.60 15 25 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 26 H 0.07 1.24 8.14 -51.93 -0.42 0.82 15 27 H 0.40 4.84 8.27 -40.82 -0.34 4.51 15 28 H 0.20 1.99 8.06 -52.49 -0.42 1.57 15 29 H 0.26 0.57 8.06 -52.49 -0.42 0.15 15 LS Contribution 268.02 15.07 4.04 4.04 Total: -1.00 -32.69 268.02 -4.47 -37.16 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: -3.26 Total: -1.19 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.59 Total: -3.47 kcal Atomic # 7 Polarization: -41.94 SS G_CDS: 0.23 Total: -41.71 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.13 Total: -11.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.69 -4.47 -37.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611148583.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.496 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds