Wall clock time and date at job start Sun Mar 29 2020 22:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29934 * 125.37646 * 2 1 4 4 C 1.36071 * 108.47673 * 180.18635 * 3 2 1 5 5 C 1.47419 * 126.45067 * 179.86132 * 4 3 2 6 6 O 1.21605 * 120.00245 * 179.69492 * 5 4 3 7 7 N 1.34779 * 119.99877 * 359.68679 * 5 4 3 8 8 C 1.46496 * 119.99965 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47464 * 325.00834 * 8 7 5 10 10 C 1.53006 * 109.46995 * 85.00573 * 8 7 5 11 11 C 1.50699 * 109.47248 * 205.00258 * 8 7 5 12 12 H 1.07999 * 120.00019 * 0.02562 * 11 8 7 13 13 C 1.37879 * 119.99908 * 180.02562 * 11 8 7 14 14 N 1.31516 * 119.99546 * 180.02562 * 13 11 8 15 15 Si 1.86797 * 120.00061 * 359.97438 * 13 11 8 16 16 H 1.48496 * 109.47023 * 90.00536 * 15 13 11 17 17 H 1.48503 * 109.47041 * 210.00292 * 15 13 11 18 18 H 1.48500 * 109.47388 * 329.99951 * 15 13 11 19 19 C 1.36094 * 107.10179 * 359.60010 * 4 3 2 20 20 O 1.34050 * 125.38065 * 179.74672 * 2 1 3 21 21 H 1.08998 * 109.46689 * 180.27784 * 1 2 3 22 22 H 1.08998 * 109.47053 * 300.27873 * 1 2 3 23 23 H 1.08999 * 109.46956 * 60.27663 * 1 2 3 24 24 H 0.97003 * 120.00044 * 0.02562 * 7 5 4 25 25 H 1.09001 * 109.47002 * 299.99701 * 10 8 7 26 26 H 1.08993 * 109.46955 * 60.00138 * 10 8 7 27 27 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 28 28 H 0.97005 * 119.99945 * 180.02562 * 14 13 11 29 29 H 1.07988 * 126.52736 * 180.27530 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5612 0.6639 -0.0042 5 6 4.7440 1.5439 -0.0085 6 8 5.8604 1.0619 -0.0065 7 7 4.5879 2.8826 -0.0150 8 6 5.7632 3.7570 -0.0187 9 1 6.5571 3.3014 0.5730 10 6 6.2478 3.9539 -1.4566 11 6 5.3973 5.0928 0.5753 12 1 4.3902 5.2723 0.9214 13 6 6.3485 6.0859 0.6769 14 7 6.0292 7.2514 1.1957 15 14 8.0906 5.7752 0.0788 16 1 8.1993 6.1611 -1.3510 17 1 9.0417 6.5836 0.8834 18 1 8.4160 4.3341 0.2288 19 6 3.5661 -0.6970 0.0023 20 8 2.2832 -1.0929 0.0048 21 1 -0.3632 -1.0277 0.0050 22 1 -0.3633 0.5181 0.8875 23 1 -0.3633 0.5095 -0.8925 24 1 3.6973 3.2670 -0.0164 25 1 6.5124 2.9877 -1.8863 26 1 5.4540 4.4096 -2.0484 27 1 7.1220 4.6049 -1.4595 28 1 6.6983 7.9502 1.2669 29 1 4.4361 -1.3367 0.0055 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614297898.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:24:00 Heat of formation + Delta-G solvation = -42.861496 kcal Electronic energy + Delta-G solvation = -14950.747088 eV Core-core repulsion = 12260.683219 eV Total energy + Delta-G solvation = -2690.063869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -44.43121 -40.57267 -36.93678 -35.96155 -34.40640 -33.17220 -31.69340 -28.74576 -27.27515 -25.56714 -23.04117 -22.14319 -21.37703 -19.71153 -18.39390 -17.93359 -17.48739 -17.29696 -16.27587 -15.87315 -15.27285 -14.94776 -14.83688 -14.66676 -14.14789 -13.88601 -13.70271 -13.30547 -13.23444 -12.80656 -12.31375 -12.16275 -11.86175 -11.65988 -11.33512 -11.16727 -10.88984 -10.15087 -9.87338 -8.39644 -6.47111 0.08662 0.99176 1.27895 1.35520 1.45823 1.61040 2.24200 2.25476 2.27870 2.95488 2.95791 3.78678 3.81929 4.39809 4.41438 4.51957 4.56006 4.64119 4.70114 4.76966 4.85815 4.94870 5.25058 5.28524 5.36777 5.53229 6.06945 6.44531 6.53540 6.77360 7.10620 7.26175 8.75938 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.049086 B = 0.006579 C = 0.006024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.287908 B = 4255.256597 C = 4646.887131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.201 3.799 3 N -0.496 5.496 4 C -0.099 4.099 5 C 0.587 3.413 6 O -0.581 6.581 7 N -0.685 5.685 8 C 0.240 3.760 9 H 0.030 0.970 10 C -0.155 4.155 11 C -0.539 4.539 12 H 0.050 0.950 13 C 0.029 3.971 14 N -0.933 5.933 15 Si 0.943 3.057 16 H -0.257 1.257 17 H -0.289 1.289 18 H -0.259 1.259 19 C 0.028 3.972 20 O -0.193 6.193 21 H 0.117 0.883 22 H 0.109 0.891 23 H 0.111 0.889 24 H 0.408 0.592 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.272 0.728 29 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.688 -16.431 -4.320 19.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.008 4.008 3 N -0.227 5.227 4 C -0.217 4.217 5 C 0.374 3.626 6 O -0.463 6.463 7 N -0.332 5.332 8 C 0.136 3.864 9 H 0.048 0.952 10 C -0.213 4.213 11 C -0.577 4.577 12 H 0.069 0.931 13 C -0.171 4.171 14 N -0.572 5.572 15 Si 0.770 3.230 16 H -0.182 1.182 17 H -0.216 1.216 18 H -0.183 1.183 19 C -0.047 4.047 20 O -0.079 6.079 21 H 0.135 0.865 22 H 0.127 0.873 23 H 0.130 0.870 24 H 0.243 0.757 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -9.090 -15.929 -4.263 18.829 hybrid contribution 0.839 0.084 0.015 0.843 sum -8.251 -15.845 -4.249 18.363 Atomic orbital electron populations 1.20621 0.77264 1.06951 1.06399 1.27389 0.98219 0.77489 0.97706 1.70748 1.00862 1.31655 1.19441 1.21687 0.91769 0.93928 1.14353 1.17220 0.86758 0.82331 0.76301 1.90731 1.25674 1.75934 1.53948 1.45940 1.11202 1.05001 1.71046 1.18900 0.85071 0.88591 0.93840 0.95182 1.22344 1.00655 1.00093 0.98189 1.21213 0.98379 0.96559 1.41570 0.93131 1.25611 1.02768 0.94301 0.94441 1.69986 1.36447 1.05076 1.45661 0.85934 0.79416 0.78939 0.78734 1.18230 1.21641 1.18324 1.25682 0.85688 0.94774 0.98518 1.84422 1.16338 1.37836 1.69350 0.86468 0.87265 0.87048 0.75696 0.93190 0.91892 0.93465 0.91890 0.72686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 71.24 0.75 0.16 15 2 C 0.20 4.50 8.30 88.39 0.73 5.23 15 3 N -0.50 -15.40 11.06 -293.03 -3.24 -18.64 15 4 C -0.10 -3.32 6.99 40.41 0.28 -3.04 15 5 C 0.59 24.56 7.78 86.66 0.67 25.24 15 6 O -0.58 -26.71 16.55 -4.05 -0.07 -26.77 15 7 N -0.68 -30.64 5.07 -449.38 -2.28 -32.92 15 8 C 0.24 12.07 2.15 44.25 0.10 12.16 15 9 H 0.03 1.64 6.63 -2.39 -0.02 1.62 15 10 C -0.15 -7.00 8.96 71.98 0.65 -6.35 15 11 C -0.54 -30.88 9.31 25.60 0.24 -30.64 15 12 H 0.05 3.13 7.98 -2.91 -0.02 3.11 15 13 C 0.03 1.66 5.45 84.65 0.46 2.12 15 14 N -0.93 -57.12 13.96 21.45 0.30 -56.82 15 15 Si 0.94 45.17 24.37 68.60 1.67 46.85 15 16 H -0.26 -11.47 6.87 99.48 0.68 -10.79 15 17 H -0.29 -13.56 7.11 99.48 0.71 -12.85 15 18 H -0.26 -12.21 6.53 99.48 0.65 -11.56 15 19 C 0.03 0.69 11.95 67.32 0.80 1.50 15 20 O -0.19 -4.24 10.73 0.39 0.00 -4.24 15 21 H 0.12 0.58 8.14 -2.39 -0.02 0.56 15 22 H 0.11 1.00 8.14 -2.39 -0.02 0.98 15 23 H 0.11 0.96 8.14 -2.39 -0.02 0.94 15 24 H 0.41 17.54 8.27 -92.71 -0.77 16.77 15 25 H 0.05 2.10 8.14 -2.39 -0.02 2.08 15 26 H 0.06 2.70 8.14 -2.39 -0.02 2.68 15 27 H 0.05 2.13 3.27 -2.39 -0.01 2.12 15 28 H 0.27 15.49 8.31 -92.70 -0.77 14.72 15 29 H 0.26 4.70 8.06 -2.92 -0.02 4.68 15 Total: -1.00 -72.48 256.87 1.41 -71.07 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.34 Total: 15.08 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.68 Total: 6.38 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -5.22 Total: -108.37 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -0.06 Total: -31.01 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.67 Total: 46.85 kcal Total: -72.48 1.41 -71.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614297898.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.210 kcal (2) G-P(sol) polarization free energy of solvation -72.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds