Wall clock time and date at job start Sun Mar 29 2020 21:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 115.55346 * 2 1 4 4 C 1.53009 * 117.51772 * 145.70615 * 2 1 3 5 5 C 1.53001 * 60.00154 * 107.47389 * 4 2 1 6 6 H 1.08992 * 117.51813 * 252.51879 * 5 4 2 7 7 C 1.53002 * 117.49544 * 107.48499 * 5 4 2 8 8 N 1.46907 * 109.46716 * 116.38061 * 7 5 4 9 9 C 1.46901 * 110.99920 * 190.00331 * 8 7 5 10 10 C 1.50702 * 109.47475 * 75.55424 * 9 8 7 11 11 H 1.07998 * 119.99605 * 356.64203 * 10 9 8 12 12 C 1.37872 * 120.00107 * 176.64285 * 10 9 8 13 13 N 1.31515 * 119.99900 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99991 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47139 * 89.99691 * 14 12 10 16 16 H 1.48495 * 109.47188 * 209.99754 * 14 12 10 17 17 H 1.48503 * 109.46928 * 330.00110 * 14 12 10 18 18 C 1.46898 * 111.00165 * 66.04652 * 8 7 5 19 19 C 1.52994 * 109.47239 * 195.79143 * 18 8 7 20 20 C 1.53003 * 117.50052 * 244.03582 * 19 18 8 21 21 C 1.52994 * 117.50127 * 175.37294 * 19 18 8 22 22 H 1.09002 * 109.47528 * 205.66789 * 1 2 3 23 23 H 1.09004 * 109.47125 * 325.66633 * 1 2 3 24 24 H 1.08993 * 109.47560 * 85.66702 * 1 2 3 25 25 H 1.09005 * 117.49493 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.49399 * 214.96787 * 4 2 1 27 27 H 1.08999 * 109.47401 * 236.37870 * 7 5 4 28 28 H 1.09000 * 109.47096 * 356.38093 * 7 5 4 29 29 H 1.09001 * 109.46927 * 195.55716 * 9 8 7 30 30 H 1.09005 * 109.46599 * 315.55429 * 9 8 7 31 31 H 0.97004 * 119.99542 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.46964 * 315.78787 * 18 8 7 33 33 H 1.09003 * 109.47158 * 75.79103 * 18 8 7 34 34 H 1.09003 * 115.55069 * 29.69776 * 19 18 8 35 35 H 1.08996 * 117.49585 * 359.97438 * 20 19 18 36 36 H 1.08999 * 117.50007 * 145.02120 * 20 19 18 37 37 H 1.09005 * 117.49910 * 214.98052 * 21 19 18 38 38 H 1.08998 * 117.49805 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1211 0.7646 5 6 2.2363 -1.1209 -0.7654 6 1 1.6110 -1.8581 -1.2689 7 6 3.5486 -0.7754 -1.4722 8 7 4.0093 -1.9371 -2.2446 9 6 5.3755 -1.7297 -2.7428 10 6 6.3550 -1.9032 -1.6107 11 1 5.9954 -2.0898 -0.6095 12 6 7.7099 -1.8238 -1.8530 13 7 8.5646 -1.9747 -0.8649 14 14 8.3317 -1.5003 -3.5846 15 1 8.4592 -0.0365 -3.7994 16 1 9.6579 -2.1441 -3.7627 17 1 7.3720 -2.0632 -4.5683 18 6 3.0862 -2.2356 -3.3476 19 6 3.3620 -3.6445 -3.8764 20 6 3.8596 -3.7734 -5.3175 21 6 2.4295 -4.1871 -4.9611 22 1 -0.3634 -0.9262 0.4451 23 1 -0.3633 0.8486 0.5796 24 1 -0.3634 0.0776 -1.0246 25 1 1.6119 -1.8587 1.2681 26 1 3.1721 -0.8751 1.2676 27 1 3.3883 0.0674 -2.1446 28 1 4.3020 -0.5103 -0.7305 29 1 5.5914 -2.4577 -3.5249 30 1 5.4649 -0.7223 -3.1495 31 1 9.5178 -1.9184 -1.0354 32 1 2.0590 -2.1772 -2.9877 33 1 3.2320 -1.5116 -4.1494 34 1 3.7495 -4.3537 -3.1449 35 1 3.9900 -2.8545 -5.8890 36 1 4.5740 -4.5677 -5.5341 37 1 2.2037 -5.2534 -4.9435 38 1 1.6192 -3.5405 -5.2978 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617099027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:28 Heat of formation + Delta-G solvation = 45.708318 kcal Electronic energy + Delta-G solvation = -15516.208297 eV Core-core repulsion = 13167.077203 eV Total energy + Delta-G solvation = -2349.131094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.42813 -37.16051 -35.08067 -32.37356 -29.09341 -28.14504 -26.56002 -23.89085 -22.09599 -21.13224 -20.55214 -19.99568 -19.38647 -16.77661 -15.51468 -15.30103 -14.74824 -14.17460 -13.90521 -13.64471 -13.30398 -12.97401 -12.51994 -12.36939 -12.10539 -11.96260 -11.54832 -11.28175 -11.16335 -10.87274 -10.83553 -10.66623 -10.35990 -10.00748 -9.77735 -9.59726 -9.49368 -9.28079 -9.19233 -8.52916 -7.31953 -6.00862 -3.96927 3.30139 3.37887 3.40618 4.03068 4.13755 4.45578 4.64876 4.97865 5.17837 5.19899 5.22597 5.27471 5.31463 5.44002 5.55748 5.82133 5.83659 5.84623 5.88887 5.94536 6.01388 6.07697 6.10972 6.16144 6.19325 6.32437 6.35751 6.38038 6.50595 6.69452 6.83421 6.92739 6.99921 7.69643 7.97384 8.11426 8.72069 9.09735 9.61719 11.12560 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.009300 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.579117 B = 3010.076572 C = 4213.189333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.167 4.167 3 H 0.100 0.900 4 C -0.168 4.168 5 C -0.135 4.135 6 H 0.102 0.898 7 C 0.092 3.908 8 N -0.521 5.521 9 C 0.161 3.839 10 C -0.503 4.503 11 H 0.080 0.920 12 C 0.067 3.933 13 N -0.902 5.902 14 Si 0.871 3.129 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.265 1.265 18 C 0.082 3.918 19 C -0.131 4.131 20 C -0.185 4.185 21 C -0.187 4.187 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.095 0.905 27 H 0.022 0.978 28 H 0.087 0.913 29 H 0.035 0.965 30 H -0.019 1.019 31 H 0.262 0.738 32 H 0.069 0.931 33 H 0.022 0.978 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.058 0.940 -3.893 14.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.186 4.186 3 H 0.118 0.882 4 C -0.205 4.205 5 C -0.153 4.153 6 H 0.120 0.880 7 C -0.036 4.036 8 N -0.244 5.244 9 C 0.035 3.965 10 C -0.541 4.541 11 H 0.098 0.902 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.698 3.302 15 H -0.205 1.205 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.047 4.047 19 C -0.149 4.149 20 C -0.222 4.222 21 C -0.224 4.224 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.114 0.886 27 H 0.040 0.960 28 H 0.105 0.895 29 H 0.053 0.947 30 H -0.001 1.001 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.840 0.535 -3.541 14.296 hybrid contribution 0.584 0.840 -1.467 1.789 sum -13.256 1.376 -5.009 14.237 Atomic orbital electron populations 1.21316 0.93410 1.01458 1.01310 1.22400 0.94668 0.94940 1.06599 0.88233 1.23122 1.02224 1.00345 0.94808 1.22476 0.98630 1.00248 0.93957 0.87964 1.21588 0.94219 0.90848 0.96927 1.61883 1.02819 1.37707 1.22029 1.20228 0.85324 0.94267 0.96706 1.21068 0.89462 1.47900 0.95719 0.90171 1.24887 0.96831 0.95133 0.96514 1.69899 1.02122 1.50978 1.31195 0.86921 0.78514 0.78613 0.86104 1.20472 1.21209 1.19006 1.21673 0.96882 0.93244 0.92871 1.22317 1.02393 0.98822 0.91377 1.23001 0.96674 1.02944 0.99555 1.22935 0.93494 1.00930 1.05071 0.92789 0.92629 0.92660 0.89427 0.88620 0.96035 0.89457 0.94724 1.00112 0.92782 0.91296 0.95967 0.86776 0.89399 0.89141 0.89212 0.89423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.19 37.16 0.38 -0.91 16 2 C -0.17 -2.24 6.13 -90.61 -0.56 -2.80 16 3 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.17 -2.48 9.82 -26.73 -0.26 -2.74 16 5 C -0.13 -2.12 5.31 -90.61 -0.48 -2.60 16 6 H 0.10 1.58 6.40 -51.93 -0.33 1.24 16 7 C 0.09 1.76 5.07 -3.82 -0.02 1.74 16 8 N -0.52 -10.92 4.38 -236.06 -1.03 -11.95 16 9 C 0.16 3.94 3.67 -4.97 -0.02 3.92 16 10 C -0.50 -14.41 9.15 -34.44 -0.31 -14.73 16 11 H 0.08 2.51 7.93 -52.49 -0.42 2.09 16 12 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 13 N -0.90 -27.90 13.96 55.43 0.77 -27.13 16 14 Si 0.87 21.75 27.54 -169.99 -4.68 17.07 16 15 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.27 -6.38 6.45 56.52 0.36 -6.01 16 18 C 0.08 1.43 5.09 -3.83 -0.02 1.41 16 19 C -0.13 -2.17 4.97 -90.62 -0.45 -2.62 16 20 C -0.18 -2.82 9.98 -26.69 -0.27 -3.09 16 21 C -0.19 -2.48 10.25 -26.69 -0.27 -2.76 16 22 H 0.05 0.56 7.90 -51.93 -0.41 0.15 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 26 H 0.10 1.51 8.03 -51.93 -0.42 1.09 16 27 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 28 H 0.09 1.87 7.07 -51.93 -0.37 1.51 16 29 H 0.03 0.86 5.77 -51.93 -0.30 0.56 16 30 H -0.02 -0.47 7.60 -51.93 -0.39 -0.86 16 31 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 32 H 0.07 1.08 6.02 -51.93 -0.31 0.77 16 33 H 0.02 0.39 7.79 -51.93 -0.40 -0.01 16 34 H 0.11 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.09 1.33 8.03 -51.93 -0.42 0.92 16 36 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.09 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 305.64 15.07 4.61 4.61 Total: -1.00 -29.91 305.64 -9.46 -39.37 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -6.74 Total: 1.34 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: -2.38 Total: -23.31 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: -0.26 Total: -39.08 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.68 Total: 17.07 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.91 -9.46 -39.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.078 kcal (2) G-P(sol) polarization free energy of solvation -29.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds