Wall clock time and date at job start Sun Mar 29 2020 21:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 115.55346 * 2 1 4 4 C 1.53009 * 117.51772 * 145.70615 * 2 1 3 5 5 C 1.53001 * 60.00154 * 107.47389 * 4 2 1 6 6 H 1.08992 * 117.51813 * 252.51879 * 5 4 2 7 7 C 1.53002 * 117.49544 * 107.48499 * 5 4 2 8 8 N 1.46907 * 109.46716 * 116.38061 * 7 5 4 9 9 C 1.46901 * 110.99920 * 190.00331 * 8 7 5 10 10 C 1.50702 * 109.47475 * 75.55424 * 9 8 7 11 11 H 1.07998 * 119.99605 * 356.64203 * 10 9 8 12 12 C 1.37872 * 120.00107 * 176.64285 * 10 9 8 13 13 N 1.31515 * 119.99900 * 179.97438 * 12 10 9 14 14 Si 1.86805 * 119.99991 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47139 * 89.99691 * 14 12 10 16 16 H 1.48495 * 109.47188 * 209.99754 * 14 12 10 17 17 H 1.48503 * 109.46928 * 330.00110 * 14 12 10 18 18 C 1.46898 * 111.00165 * 66.04652 * 8 7 5 19 19 C 1.52994 * 109.47239 * 195.79143 * 18 8 7 20 20 C 1.53003 * 117.50052 * 244.03582 * 19 18 8 21 21 C 1.52994 * 117.50127 * 175.37294 * 19 18 8 22 22 H 1.09002 * 109.47528 * 205.66789 * 1 2 3 23 23 H 1.09004 * 109.47125 * 325.66633 * 1 2 3 24 24 H 1.08993 * 109.47560 * 85.66702 * 1 2 3 25 25 H 1.09005 * 117.49493 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.49399 * 214.96787 * 4 2 1 27 27 H 1.08999 * 109.47401 * 236.37870 * 7 5 4 28 28 H 1.09000 * 109.47096 * 356.38093 * 7 5 4 29 29 H 1.09001 * 109.46927 * 195.55716 * 9 8 7 30 30 H 1.09005 * 109.46599 * 315.55429 * 9 8 7 31 31 H 0.97004 * 119.99542 * 180.02562 * 13 12 10 32 32 H 1.09004 * 109.46964 * 315.78787 * 18 8 7 33 33 H 1.09003 * 109.47158 * 75.79103 * 18 8 7 34 34 H 1.09003 * 115.55069 * 29.69776 * 19 18 8 35 35 H 1.08996 * 117.49585 * 359.97438 * 20 19 18 36 36 H 1.08999 * 117.50007 * 145.02120 * 20 19 18 37 37 H 1.09005 * 117.49910 * 214.98052 * 21 19 18 38 38 H 1.08998 * 117.49805 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2369 -1.1211 0.7646 5 6 2.2363 -1.1209 -0.7654 6 1 1.6110 -1.8581 -1.2689 7 6 3.5486 -0.7754 -1.4722 8 7 4.0093 -1.9371 -2.2446 9 6 5.3755 -1.7297 -2.7428 10 6 6.3550 -1.9032 -1.6107 11 1 5.9954 -2.0898 -0.6095 12 6 7.7099 -1.8238 -1.8530 13 7 8.5646 -1.9747 -0.8649 14 14 8.3317 -1.5003 -3.5846 15 1 8.4592 -0.0365 -3.7994 16 1 9.6579 -2.1441 -3.7627 17 1 7.3720 -2.0632 -4.5683 18 6 3.0862 -2.2356 -3.3476 19 6 3.3620 -3.6445 -3.8764 20 6 3.8596 -3.7734 -5.3175 21 6 2.4295 -4.1871 -4.9611 22 1 -0.3634 -0.9262 0.4451 23 1 -0.3633 0.8486 0.5796 24 1 -0.3634 0.0776 -1.0246 25 1 1.6119 -1.8587 1.2681 26 1 3.1721 -0.8751 1.2676 27 1 3.3883 0.0674 -2.1446 28 1 4.3020 -0.5103 -0.7305 29 1 5.5914 -2.4577 -3.5249 30 1 5.4649 -0.7223 -3.1495 31 1 9.5178 -1.9184 -1.0354 32 1 2.0590 -2.1772 -2.9877 33 1 3.2320 -1.5116 -4.1494 34 1 3.7495 -4.3537 -3.1449 35 1 3.9900 -2.8545 -5.8890 36 1 4.5740 -4.5677 -5.5341 37 1 2.2037 -5.2534 -4.9435 38 1 1.6192 -3.5405 -5.2978 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617099027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:28 Heat of formation + Delta-G solvation = 28.304116 kcal Electronic energy + Delta-G solvation = -15516.962999 eV Core-core repulsion = 13167.077203 eV Total energy + Delta-G solvation = -2349.885797 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81745 -38.36321 -36.58404 -34.54976 -30.56878 -29.74533 -27.86616 -25.65549 -23.20817 -22.81198 -21.83473 -21.24125 -20.80054 -18.96950 -16.93975 -16.72402 -16.40953 -15.67221 -15.25451 -15.16777 -14.83816 -14.29199 -14.15586 -13.79263 -13.58787 -13.30348 -13.01646 -12.65341 -12.56216 -12.34681 -12.29665 -12.13649 -11.85123 -11.80090 -11.51421 -11.10928 -10.89578 -10.74463 -10.63971 -10.54418 -8.98287 -8.28225 -6.30332 1.31604 1.33819 1.44899 2.33436 2.78418 2.96426 3.05021 3.25881 3.77892 3.96346 4.01313 4.03551 4.14031 4.22633 4.45384 4.49094 4.59970 4.62305 4.66379 4.74822 4.79583 4.83783 4.97355 4.98689 5.00497 5.03138 5.07666 5.12518 5.22604 5.28582 5.36840 5.42466 5.51493 5.58090 6.02984 6.44460 6.68796 6.75742 7.32857 8.88847 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018385 B = 0.009300 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.579117 B = 3010.076572 C = 4213.189333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.144 4.144 3 H 0.098 0.902 4 C -0.178 4.178 5 C -0.145 4.145 6 H 0.113 0.887 7 C 0.096 3.904 8 N -0.538 5.538 9 C 0.175 3.825 10 C -0.510 4.510 11 H 0.034 0.966 12 C 0.008 3.992 13 N -0.950 5.950 14 Si 0.942 3.058 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.248 1.248 18 C 0.086 3.914 19 C -0.160 4.160 20 C -0.194 4.194 21 C -0.151 4.151 22 H 0.060 0.940 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.028 0.972 28 H 0.048 0.952 29 H 0.035 0.965 30 H -0.021 1.021 31 H 0.266 0.734 32 H 0.090 0.910 33 H 0.025 0.975 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.106 0.894 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.273 1.145 -6.054 17.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.162 4.162 3 H 0.116 0.884 4 C -0.215 4.215 5 C -0.164 4.164 6 H 0.131 0.869 7 C -0.032 4.032 8 N -0.262 5.262 9 C 0.048 3.952 10 C -0.549 4.549 11 H 0.052 0.948 12 C -0.189 4.189 13 N -0.591 5.591 14 Si 0.766 3.234 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.171 1.171 18 C -0.041 4.041 19 C -0.178 4.178 20 C -0.231 4.231 21 C -0.188 4.188 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.084 0.916 25 H 0.122 0.878 26 H 0.092 0.908 27 H 0.046 0.954 28 H 0.067 0.933 29 H 0.053 0.947 30 H -0.003 1.003 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.043 0.957 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -16.087 0.739 -5.702 17.083 hybrid contribution 1.248 0.758 -0.683 1.612 sum -14.838 1.497 -6.385 16.223 Atomic orbital electron populations 1.21342 0.90786 1.02606 1.02417 1.22506 0.96462 0.93894 1.03382 0.88395 1.23154 1.02110 1.02064 0.94209 1.22347 0.97480 1.02387 0.94155 0.86949 1.21491 0.94878 0.90652 0.96147 1.61782 1.02085 1.38567 1.23720 1.19919 0.86654 0.93841 0.94804 1.21287 0.90845 1.47525 0.95214 0.94756 1.25820 0.96960 0.94804 1.01350 1.70058 1.02637 1.52460 1.33922 0.85781 0.78208 0.78995 0.80423 1.19406 1.20550 1.17127 1.21723 0.96893 0.93793 0.91702 1.22215 1.05745 0.98046 0.91831 1.23086 0.98561 1.03286 0.98204 1.23026 0.92718 1.02197 1.00842 0.92096 0.91021 0.91601 0.87770 0.90799 0.95425 0.93312 0.94679 1.00293 0.92518 0.89157 0.95656 0.89243 0.89213 0.89135 0.87524 0.87375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.13 10.19 71.98 0.73 -1.40 16 2 C -0.14 -3.63 6.13 -10.79 -0.07 -3.70 16 3 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 4 C -0.18 -5.27 9.82 30.60 0.30 -4.96 16 5 C -0.15 -4.49 5.31 -10.79 -0.06 -4.54 16 6 H 0.11 3.25 6.40 -2.39 -0.02 3.23 16 7 C 0.10 3.74 5.07 86.30 0.44 4.18 16 8 N -0.54 -22.80 4.38 -900.76 -3.95 -26.75 16 9 C 0.17 8.66 3.67 85.56 0.31 8.98 16 10 C -0.51 -30.49 9.15 25.60 0.23 -30.25 16 11 H 0.03 2.30 7.93 -2.91 -0.02 2.27 16 12 C 0.01 0.45 5.47 84.65 0.46 0.91 16 13 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 14 Si 0.94 45.12 27.54 68.60 1.89 47.01 16 15 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 16 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 17 H -0.25 -11.06 6.45 99.48 0.64 -10.42 16 18 C 0.09 2.89 5.09 86.30 0.44 3.33 16 19 C -0.16 -5.06 4.97 -10.80 -0.05 -5.12 16 20 C -0.19 -5.50 9.98 30.62 0.31 -5.19 16 21 C -0.15 -3.48 10.25 30.62 0.31 -3.17 16 22 H 0.06 1.07 7.90 -2.39 -0.02 1.05 16 23 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 24 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.10 2.70 8.05 -2.38 -0.02 2.68 16 26 H 0.07 2.48 8.03 -2.39 -0.02 2.46 16 27 H 0.03 1.02 8.12 -2.39 -0.02 1.00 16 28 H 0.05 2.23 7.07 -2.39 -0.02 2.22 16 29 H 0.04 1.73 5.77 -2.39 -0.01 1.72 16 30 H -0.02 -1.02 7.60 -2.38 -0.02 -1.03 16 31 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 32 H 0.09 2.60 6.02 -2.38 -0.01 2.58 16 33 H 0.03 0.84 7.79 -2.39 -0.02 0.82 16 34 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 35 H 0.09 2.50 8.03 -2.39 -0.02 2.48 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 37 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 38 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -66.93 305.64 2.54 -64.39 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.93 Total: 16.75 kcal Atomic # 6 Polarization: -44.30 SS G_CDS: 3.36 Total: -40.94 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -3.65 Total: -87.21 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.89 Total: 47.01 kcal Total: -66.93 2.54 -64.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.695 kcal (2) G-P(sol) polarization free energy of solvation -66.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds