Wall clock time and date at job start Sun Mar 29 2020 21:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 115.54742 * 2 1 4 4 C 1.53002 * 117.49838 * 145.67057 * 2 1 3 5 5 C 1.53004 * 60.03010 * 107.50107 * 4 2 1 6 6 H 1.08996 * 117.49641 * 107.49892 * 5 4 2 7 7 C 1.52997 * 117.49728 * 252.52101 * 5 4 2 8 8 N 1.46504 * 109.47018 * 243.60871 * 7 5 4 9 9 C 1.36934 * 119.99955 * 264.02132 * 8 7 5 10 10 H 1.08007 * 120.00035 * 196.52127 * 9 8 7 11 11 C 1.38807 * 120.00443 * 16.52393 * 9 8 7 12 12 N 1.31628 * 119.99783 * 21.80273 * 11 9 8 13 13 Si 1.86794 * 120.00390 * 201.80347 * 11 9 8 14 14 H 1.48502 * 109.47183 * 0.02562 * 13 11 9 15 15 H 1.48501 * 109.47397 * 119.99684 * 13 11 9 16 16 H 1.48501 * 109.47419 * 239.99943 * 13 11 9 17 17 C 1.46507 * 119.99993 * 84.01725 * 8 7 5 18 18 C 1.54268 * 110.03248 * 237.17168 * 17 8 7 19 19 C 1.54892 * 104.19169 * 217.10851 * 18 17 8 20 20 C 1.54890 * 102.75245 * 37.93801 * 19 18 17 21 21 C 1.53877 * 110.03080 * 120.00098 * 17 8 7 22 22 H 1.08999 * 109.47082 * 325.71918 * 1 2 3 23 23 H 1.08998 * 109.46896 * 85.72026 * 1 2 3 24 24 H 1.09003 * 109.46797 * 205.71901 * 1 2 3 25 25 H 1.09001 * 117.49647 * 215.00405 * 4 2 1 26 26 H 1.09000 * 117.49786 * 359.97438 * 4 2 1 27 27 H 1.08994 * 109.47192 * 3.60657 * 7 5 4 28 28 H 1.09003 * 109.47159 * 123.61105 * 7 5 4 29 29 H 0.96998 * 119.99711 * 179.97438 * 12 11 9 30 30 H 1.09002 * 110.01437 * 358.60936 * 17 8 7 31 31 H 1.09007 * 110.48379 * 335.78104 * 18 17 8 32 32 H 1.08997 * 110.49040 * 98.42433 * 18 17 8 33 33 H 1.09002 * 110.75209 * 279.62466 * 19 18 17 34 34 H 1.08995 * 110.91356 * 156.33479 * 19 18 17 35 35 H 1.08994 * 110.48803 * 203.38214 * 20 19 18 36 36 H 1.09000 * 110.59532 * 80.79298 * 20 19 18 37 37 H 1.08999 * 110.02966 * 238.57346 * 21 17 8 38 38 H 1.09000 * 110.03017 * 0.02562 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2365 -1.1208 0.7654 5 6 2.2372 -1.1218 -0.7647 6 1 3.1725 -0.8764 -1.2677 7 6 1.3598 -2.1574 -1.4707 8 7 2.2070 -3.0723 -2.2398 9 6 2.4186 -2.8508 -3.5745 10 1 2.8078 -3.6420 -4.1982 11 6 2.1329 -1.6094 -4.1259 12 7 2.0776 -0.5438 -3.3551 13 14 1.8269 -1.4508 -5.9618 14 1 1.9456 -2.7862 -6.6005 15 1 0.4622 -0.9123 -6.1916 16 1 2.8292 -0.5281 -6.5528 17 6 2.8279 -4.2241 -1.5810 18 6 4.3597 -4.1709 -1.7564 19 6 4.7721 -5.6521 -1.9436 20 6 3.6150 -6.2237 -2.8000 21 6 2.3545 -5.5293 -2.2445 22 1 -0.3633 0.8491 0.5788 23 1 -0.3633 0.0767 -1.0248 24 1 -0.3633 -0.9259 0.4460 25 1 3.1714 -0.8746 1.2689 26 1 1.6113 -1.8578 1.2692 27 1 0.7955 -2.7220 -0.7286 28 1 0.6687 -1.6498 -2.1438 29 1 1.8783 0.3237 -3.7405 30 1 2.5728 -4.2300 -0.5213 31 1 4.6225 -3.5873 -2.6388 32 1 4.8313 -3.7529 -0.8671 33 1 4.8290 -6.1617 -0.9817 34 1 5.7204 -5.7277 -2.4757 35 1 3.5432 -7.3037 -2.6722 36 1 3.7563 -5.9734 -3.8515 37 1 1.8703 -6.1689 -1.5066 38 1 1.6631 -5.3056 -3.0569 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617099115.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:08 Heat of formation + Delta-G solvation = 32.576287 kcal Electronic energy + Delta-G solvation = -16340.779895 eV Core-core repulsion = 13991.079354 eV Total energy + Delta-G solvation = -2349.700541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -37.98307 -36.75425 -33.84402 -30.78754 -27.92686 -27.80213 -26.84373 -25.76111 -22.37119 -20.51397 -19.93628 -19.00715 -18.38309 -16.30922 -15.52662 -14.69555 -14.52990 -14.02696 -13.18024 -13.03637 -12.95260 -12.55142 -12.26300 -11.76811 -11.28605 -11.11830 -10.91876 -10.71523 -10.65809 -10.43389 -10.34977 -10.29039 -10.17731 -10.00693 -9.93458 -9.72156 -9.53084 -8.86636 -8.53357 -8.23449 -6.68986 -5.66863 -3.02178 3.41867 3.51366 3.52383 4.56041 4.90726 5.32808 5.37000 5.44592 5.54039 5.70303 5.71258 5.94653 6.00418 6.13406 6.17423 6.26776 6.31744 6.43213 6.46210 6.50174 6.55697 6.57115 6.61347 6.67684 6.75885 6.79893 6.85267 6.96318 7.08677 7.19408 7.28246 7.40659 7.62099 7.84147 7.94008 8.47847 9.32635 9.98281 10.45582 11.37466 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.017612 B = 0.013728 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.425975 B = 2039.172803 C = 3239.621227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.161 4.161 3 H 0.083 0.917 4 C -0.222 4.222 5 C -0.074 4.074 6 H 0.110 0.890 7 C 0.207 3.793 8 N -0.589 5.589 9 C -0.243 4.243 10 H 0.071 0.929 11 C -0.001 4.001 12 N -0.891 5.891 13 Si 0.890 3.110 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.294 1.294 17 C 0.175 3.825 18 C -0.133 4.133 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.137 4.137 22 H 0.040 0.960 23 H 0.060 0.940 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.007 0.993 28 H 0.080 0.920 29 H 0.249 0.751 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.368 -4.683 4.990 6.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.180 4.180 3 H 0.101 0.899 4 C -0.259 4.259 5 C -0.095 4.095 6 H 0.128 0.872 7 C 0.082 3.918 8 N -0.308 5.308 9 C -0.372 4.372 10 H 0.089 0.911 11 C -0.199 4.199 12 N -0.536 5.536 13 Si 0.721 3.279 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.222 1.222 17 C 0.066 3.934 18 C -0.172 4.172 19 C -0.162 4.162 20 C -0.156 4.156 21 C -0.177 4.177 22 H 0.059 0.941 23 H 0.079 0.921 24 H 0.065 0.935 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.025 0.975 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.063 0.937 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.302 -4.517 4.928 6.692 hybrid contribution -0.011 0.382 -0.893 0.971 sum 0.291 -4.135 4.035 5.785 Atomic orbital electron populations 1.21193 0.94312 0.99866 1.01353 1.22038 0.94277 0.94199 1.07456 0.89864 1.23250 1.01334 1.02517 0.98786 1.23106 1.01946 0.96861 0.87555 0.87201 1.20206 0.91246 0.88299 0.92080 1.44276 1.53816 1.26158 1.06560 1.19115 1.38965 0.95428 0.83740 0.91104 1.24777 1.02802 0.95266 0.97031 1.70203 1.52526 0.97654 1.33265 0.86409 0.77574 0.77357 0.86604 1.20613 1.21885 1.22186 1.20910 0.90852 0.87418 0.94187 1.22835 0.97986 0.94662 1.01757 1.22437 0.97469 0.97522 0.98786 1.22257 0.95819 0.97952 0.99559 1.22670 0.97344 0.97333 1.00354 0.94113 0.92129 0.93548 0.91039 0.90630 0.97521 0.90206 0.94036 0.93128 0.90133 0.93473 0.92769 0.92897 0.93381 0.92080 0.93748 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 9.20 37.16 0.34 -1.61 16 2 C -0.16 -3.16 6.41 -90.58 -0.58 -3.74 16 3 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.22 -4.20 9.82 -26.73 -0.26 -4.46 16 5 C -0.07 -1.64 4.45 -90.58 -0.40 -2.05 16 6 H 0.11 2.84 7.45 -51.93 -0.39 2.46 16 7 C 0.21 4.82 4.18 -4.04 -0.02 4.80 16 8 N -0.59 -13.97 2.47 -164.38 -0.41 -14.38 16 9 C -0.24 -6.31 7.65 -15.06 -0.12 -6.42 16 10 H 0.07 1.85 7.60 -52.48 -0.40 1.45 16 11 C 0.00 -0.02 4.87 -17.43 -0.08 -0.11 16 12 N -0.89 -24.18 9.08 55.49 0.50 -23.68 16 13 Si 0.89 21.40 29.61 -169.99 -5.03 16.37 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 16 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 17 C 0.17 3.56 3.42 -66.81 -0.23 3.33 16 18 C -0.13 -2.57 6.41 -25.07 -0.16 -2.73 16 19 C -0.12 -2.00 6.91 -24.74 -0.17 -2.17 16 20 C -0.12 -1.94 6.83 -25.07 -0.17 -2.12 16 21 C -0.14 -2.53 6.13 -25.61 -0.16 -2.69 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.06 1.15 7.84 -51.93 -0.41 0.75 16 24 H 0.05 0.78 7.90 -51.93 -0.41 0.37 16 25 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.36 7.94 -51.93 -0.41 0.95 16 27 H 0.01 0.15 7.80 -51.93 -0.41 -0.26 16 28 H 0.08 2.07 5.99 -51.93 -0.31 1.75 16 29 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.05 1.01 7.92 -51.93 -0.41 0.60 16 31 H 0.08 1.79 7.01 -51.93 -0.36 1.42 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.07 1.51 7.30 -51.93 -0.38 1.13 16 LS Contribution 295.07 15.07 4.45 4.45 Total: -1.00 -26.04 295.07 -9.32 -35.36 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.83 Total: 1.84 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.01 Total: -19.96 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.10 Total: -38.06 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.04 -9.32 -35.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099115.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.936 kcal (2) G-P(sol) polarization free energy of solvation -26.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds