Wall clock time and date at job start Sun Mar 29 2020 21:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.55918 * 2 1 4 4 C 1.53000 * 117.50021 * 145.69485 * 2 1 3 5 5 C 1.53004 * 60.00184 * 107.48800 * 4 2 1 6 6 H 1.08994 * 117.49708 * 252.48875 * 5 4 2 7 7 C 1.52996 * 117.49662 * 107.48727 * 5 4 2 8 8 N 1.46505 * 109.46906 * 116.39426 * 7 5 4 9 9 C 1.36937 * 120.00144 * 89.99805 * 8 7 5 10 10 H 1.07999 * 119.99773 * 172.33628 * 9 8 7 11 11 C 1.38817 * 119.99917 * 352.61090 * 9 8 7 12 12 N 1.31621 * 119.99780 * 335.63172 * 11 9 8 13 13 Si 1.86796 * 119.99822 * 155.62723 * 11 9 8 14 14 H 1.48493 * 109.47244 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46864 * 120.00102 * 13 11 9 16 16 H 1.48502 * 109.47027 * 239.99671 * 13 11 9 17 17 C 1.46498 * 119.99871 * 269.99675 * 8 7 5 18 18 C 1.54266 * 110.03532 * 242.25438 * 17 8 7 19 19 C 1.54891 * 104.19664 * 217.10732 * 18 17 8 20 20 C 1.54891 * 102.74815 * 37.94119 * 19 18 17 21 21 C 1.53879 * 110.03185 * 125.08570 * 17 8 7 22 22 H 1.08996 * 109.46882 * 205.68638 * 1 2 3 23 23 H 1.08997 * 109.47221 * 325.68656 * 1 2 3 24 24 H 1.09001 * 109.47167 * 85.68394 * 1 2 3 25 25 H 1.09003 * 117.49771 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.51450 * 214.97054 * 4 2 1 27 27 H 1.08997 * 109.47167 * 356.39258 * 7 5 4 28 28 H 1.08998 * 109.47251 * 236.39274 * 7 5 4 29 29 H 0.97001 * 119.99607 * 176.40548 * 12 11 9 30 30 H 1.09005 * 110.01673 * 3.69979 * 17 8 7 31 31 H 1.08999 * 110.48622 * 335.78777 * 18 17 8 32 32 H 1.09000 * 110.48120 * 98.42797 * 18 17 8 33 33 H 1.09000 * 110.75466 * 279.62852 * 19 18 17 34 34 H 1.08989 * 110.75518 * 156.25636 * 19 18 17 35 35 H 1.08998 * 110.48234 * 203.37729 * 20 19 18 36 36 H 1.08995 * 110.59906 * 80.79204 * 20 19 18 37 37 H 1.08999 * 110.03314 * 238.57158 * 21 17 8 38 38 H 1.09002 * 110.03006 * 0.02562 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 0.7649 5 6 2.2365 -1.1210 -0.7652 6 1 1.6116 -1.8586 -1.2684 7 6 3.5490 -0.7758 -1.4715 8 7 4.0083 -1.9343 -2.2417 9 6 3.6146 -2.0906 -3.5439 10 1 4.0485 -2.8728 -4.1491 11 6 2.6619 -1.2400 -4.0878 12 7 1.8029 -0.6258 -3.3022 13 14 2.5992 -0.9669 -5.9347 14 1 3.6645 -1.7675 -6.5898 15 1 1.2734 -1.3899 -6.4528 16 1 2.8094 0.4733 -6.2295 17 6 4.8890 -2.9256 -1.6188 18 6 6.2417 -2.9702 -2.3591 19 6 6.6331 -4.4688 -2.3451 20 6 5.2729 -5.1793 -2.5554 21 6 4.2730 -4.3302 -1.7436 22 1 -0.3633 -0.9261 0.4454 23 1 -0.3633 0.8488 0.5793 24 1 -0.3633 0.0773 -1.0248 25 1 1.6113 -1.8584 1.2685 26 1 3.1717 -0.8756 1.2681 27 1 4.3022 -0.5109 -0.7295 28 1 3.3891 0.0672 -2.1438 29 1 1.1712 0.0084 -3.6761 30 1 5.0451 -2.6783 -0.5687 31 1 6.1279 -2.6151 -3.3833 32 1 6.9863 -2.3764 -1.8289 33 1 7.0689 -4.7452 -1.3851 34 1 7.3182 -4.6966 -3.1615 35 1 5.3108 -6.1976 -2.1687 36 1 5.0014 -5.1829 -3.6110 37 1 4.1311 -4.7649 -0.7542 38 1 3.3191 -4.2743 -2.2681 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617099116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:10 Heat of formation + Delta-G solvation = 34.756759 kcal Electronic energy + Delta-G solvation = -16259.470983 eV Core-core repulsion = 13909.864994 eV Total energy + Delta-G solvation = -2349.605989 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.96022 -36.68097 -33.91578 -30.81083 -28.28404 -27.87628 -26.60619 -25.52075 -22.31905 -20.13402 -19.97600 -19.14717 -18.93919 -16.29404 -15.47458 -14.70279 -14.17046 -13.99263 -13.51154 -12.93602 -12.78278 -12.58459 -12.34660 -11.69972 -11.38547 -11.08287 -10.89873 -10.70147 -10.62955 -10.45138 -10.35855 -10.30297 -10.17903 -10.02545 -9.96509 -9.65599 -9.57926 -8.91597 -8.50045 -8.14269 -6.78157 -5.66017 -2.97075 3.43660 3.53624 3.54365 4.57896 4.93901 5.27635 5.36469 5.41864 5.54363 5.64681 5.81230 5.96806 6.04871 6.13516 6.20002 6.24272 6.27195 6.40848 6.48252 6.52713 6.54674 6.55918 6.60504 6.69148 6.76681 6.81672 6.82735 6.98198 7.10766 7.17509 7.22801 7.42811 7.64432 7.86855 7.95050 8.44039 9.32365 9.98735 10.43312 11.36568 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.012946 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.685816 B = 2162.368233 C = 3342.623572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.159 4.159 3 H 0.084 0.916 4 C -0.224 4.224 5 C -0.067 4.067 6 H 0.109 0.891 7 C 0.202 3.798 8 N -0.591 5.591 9 C -0.239 4.239 10 H 0.074 0.926 11 C -0.002 4.002 12 N -0.888 5.888 13 Si 0.883 3.117 14 H -0.282 1.282 15 H -0.295 1.295 16 H -0.292 1.292 17 C 0.176 3.824 18 C -0.138 4.138 19 C -0.123 4.123 20 C -0.119 4.119 21 C -0.135 4.135 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.008 0.992 28 H 0.082 0.918 29 H 0.248 0.752 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.055 0.945 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.600 -2.891 4.879 6.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 H 0.102 0.898 4 C -0.261 4.261 5 C -0.087 4.087 6 H 0.127 0.873 7 C 0.077 3.923 8 N -0.311 5.311 9 C -0.368 4.368 10 H 0.092 0.908 11 C -0.199 4.199 12 N -0.534 5.534 13 Si 0.713 3.287 14 H -0.207 1.207 15 H -0.223 1.223 16 H -0.219 1.219 17 C 0.068 3.932 18 C -0.177 4.177 19 C -0.161 4.161 20 C -0.157 4.157 21 C -0.174 4.174 22 H 0.061 0.939 23 H 0.057 0.943 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.091 0.909 27 H 0.026 0.974 28 H 0.100 0.900 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.438 -2.801 4.819 6.549 hybrid contribution -0.237 0.218 -0.903 0.959 sum 3.201 -2.583 3.916 5.679 Atomic orbital electron populations 1.21196 0.94372 0.99558 1.01412 1.22019 0.94135 0.94281 1.07367 0.89793 1.23307 1.01397 1.02416 0.98994 1.23034 0.99970 0.98495 0.87240 0.87307 1.20398 0.89009 0.90840 0.92073 1.44306 1.53948 1.22509 1.10320 1.19142 1.16945 1.14324 0.86348 0.90823 1.24653 0.96541 1.01718 0.97014 1.70308 1.19104 1.30999 1.32964 0.86513 0.77045 0.77678 0.87457 1.20707 1.22295 1.21927 1.20897 0.89373 0.88614 0.94346 1.22900 0.98018 0.94318 1.02478 1.22429 0.96809 0.96904 0.99976 1.22270 0.95508 0.97513 1.00398 1.22629 1.00086 0.96372 0.98352 0.93915 0.94258 0.91978 0.90986 0.90867 0.97426 0.89974 0.94105 0.93066 0.90529 0.93433 0.92636 0.92870 0.93339 0.92086 0.93807 0.90335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.19 37.16 0.38 -1.56 16 2 C -0.16 -3.14 6.13 -90.61 -0.56 -3.69 16 3 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 4 C -0.22 -4.26 9.82 -26.73 -0.26 -4.53 16 5 C -0.07 -1.48 4.06 -90.62 -0.37 -1.85 16 6 H 0.11 2.81 7.53 -51.93 -0.39 2.42 16 7 C 0.20 4.73 5.17 -4.04 -0.02 4.71 16 8 N -0.59 -13.97 2.49 -164.39 -0.41 -14.38 16 9 C -0.24 -6.17 7.70 -15.06 -0.12 -6.28 16 10 H 0.07 1.92 7.57 -52.49 -0.40 1.52 16 11 C 0.00 -0.06 4.93 -17.43 -0.09 -0.14 16 12 N -0.89 -23.88 8.75 55.49 0.49 -23.39 16 13 Si 0.88 21.33 29.62 -169.99 -5.03 16.30 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 H -0.30 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 C 0.18 3.56 3.42 -66.81 -0.23 3.33 16 18 C -0.14 -2.52 6.40 -25.07 -0.16 -2.68 16 19 C -0.12 -1.92 6.91 -24.74 -0.17 -2.10 16 20 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 21 C -0.13 -2.57 6.22 -25.61 -0.16 -2.72 16 22 H 0.04 0.73 7.90 -51.93 -0.41 0.32 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.07 1.31 8.05 -51.93 -0.42 0.89 16 26 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 27 H 0.01 0.17 7.70 -51.93 -0.40 -0.23 16 28 H 0.08 2.15 6.19 -51.93 -0.32 1.82 16 29 H 0.25 6.65 8.32 -40.82 -0.34 6.31 16 30 H 0.05 1.01 7.86 -51.93 -0.41 0.60 16 31 H 0.08 1.57 7.01 -51.93 -0.36 1.21 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.77 8.14 -51.94 -0.42 0.34 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.08 1.72 7.17 -51.93 -0.37 1.35 16 LS Contribution 296.55 15.07 4.47 4.47 Total: -1.00 -25.81 296.55 -9.25 -35.06 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.84 Total: 1.61 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: -1.92 Total: -19.66 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.08 Total: -37.78 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.03 Total: 16.30 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -25.81 -9.25 -35.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.821 kcal (2) G-P(sol) polarization free energy of solvation -25.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds