Wall clock time and date at job start Sun Mar 29 2020 21:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 115.55918 * 2 1 4 4 C 1.53000 * 117.50021 * 145.69485 * 2 1 3 5 5 C 1.53004 * 60.00184 * 107.48800 * 4 2 1 6 6 H 1.08994 * 117.49708 * 252.48875 * 5 4 2 7 7 C 1.52996 * 117.49662 * 107.48727 * 5 4 2 8 8 N 1.46505 * 109.46906 * 116.39426 * 7 5 4 9 9 C 1.36937 * 120.00144 * 89.99805 * 8 7 5 10 10 H 1.07999 * 119.99773 * 172.33628 * 9 8 7 11 11 C 1.38817 * 119.99917 * 352.61090 * 9 8 7 12 12 N 1.31621 * 119.99780 * 335.63172 * 11 9 8 13 13 Si 1.86796 * 119.99822 * 155.62723 * 11 9 8 14 14 H 1.48493 * 109.47244 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.46864 * 120.00102 * 13 11 9 16 16 H 1.48502 * 109.47027 * 239.99671 * 13 11 9 17 17 C 1.46498 * 119.99871 * 269.99675 * 8 7 5 18 18 C 1.54266 * 110.03532 * 242.25438 * 17 8 7 19 19 C 1.54891 * 104.19664 * 217.10732 * 18 17 8 20 20 C 1.54891 * 102.74815 * 37.94119 * 19 18 17 21 21 C 1.53879 * 110.03185 * 125.08570 * 17 8 7 22 22 H 1.08996 * 109.46882 * 205.68638 * 1 2 3 23 23 H 1.08997 * 109.47221 * 325.68656 * 1 2 3 24 24 H 1.09001 * 109.47167 * 85.68394 * 1 2 3 25 25 H 1.09003 * 117.49771 * 359.97438 * 4 2 1 26 26 H 1.08998 * 117.51450 * 214.97054 * 4 2 1 27 27 H 1.08997 * 109.47167 * 356.39258 * 7 5 4 28 28 H 1.08998 * 109.47251 * 236.39274 * 7 5 4 29 29 H 0.97001 * 119.99607 * 176.40548 * 12 11 9 30 30 H 1.09005 * 110.01673 * 3.69979 * 17 8 7 31 31 H 1.08999 * 110.48622 * 335.78777 * 18 17 8 32 32 H 1.09000 * 110.48120 * 98.42797 * 18 17 8 33 33 H 1.09000 * 110.75466 * 279.62852 * 19 18 17 34 34 H 1.08989 * 110.75518 * 156.25636 * 19 18 17 35 35 H 1.08998 * 110.48234 * 203.37729 * 20 19 18 36 36 H 1.08995 * 110.59906 * 80.79204 * 20 19 18 37 37 H 1.08999 * 110.03314 * 238.57158 * 21 17 8 38 38 H 1.09002 * 110.03006 * 0.02562 * 21 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 0.7649 5 6 2.2365 -1.1210 -0.7652 6 1 1.6116 -1.8586 -1.2684 7 6 3.5490 -0.7758 -1.4715 8 7 4.0083 -1.9343 -2.2417 9 6 3.6146 -2.0906 -3.5439 10 1 4.0485 -2.8728 -4.1491 11 6 2.6619 -1.2400 -4.0878 12 7 1.8029 -0.6258 -3.3022 13 14 2.5992 -0.9669 -5.9347 14 1 3.6645 -1.7675 -6.5898 15 1 1.2734 -1.3899 -6.4528 16 1 2.8094 0.4733 -6.2295 17 6 4.8890 -2.9256 -1.6188 18 6 6.2417 -2.9702 -2.3591 19 6 6.6331 -4.4688 -2.3451 20 6 5.2729 -5.1793 -2.5554 21 6 4.2730 -4.3302 -1.7436 22 1 -0.3633 -0.9261 0.4454 23 1 -0.3633 0.8488 0.5793 24 1 -0.3633 0.0773 -1.0248 25 1 1.6113 -1.8584 1.2685 26 1 3.1717 -0.8756 1.2681 27 1 4.3022 -0.5109 -0.7295 28 1 3.3891 0.0672 -2.1438 29 1 1.1712 0.0084 -3.6761 30 1 5.0451 -2.6783 -0.5687 31 1 6.1279 -2.6151 -3.3833 32 1 6.9863 -2.3764 -1.8289 33 1 7.0689 -4.7452 -1.3851 34 1 7.3182 -4.6966 -3.1615 35 1 5.3108 -6.1976 -2.1687 36 1 5.0014 -5.1829 -3.6110 37 1 4.1311 -4.7649 -0.7542 38 1 3.3191 -4.2743 -2.2681 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617099116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:09 Heat of formation + Delta-G solvation = 23.812394 kcal Electronic energy + Delta-G solvation = -16259.945566 eV Core-core repulsion = 13909.864994 eV Total energy + Delta-G solvation = -2350.080572 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.58981 -38.25485 -35.67859 -32.70198 -29.85606 -29.32635 -28.20146 -27.36740 -24.10643 -21.75432 -21.33978 -20.86074 -20.59023 -18.17670 -17.19471 -16.27927 -15.91177 -15.62985 -15.21403 -14.71338 -14.35951 -14.04623 -13.87462 -13.30583 -13.11410 -12.93143 -12.63530 -12.50213 -12.19805 -12.11210 -11.93534 -11.80252 -11.72790 -11.71025 -11.64583 -11.29800 -11.19192 -10.64170 -10.27680 -9.94367 -8.67768 -7.67248 -4.97882 1.46452 1.52237 1.58300 2.60787 3.30108 3.37836 3.66353 4.00404 4.04115 4.18385 4.31560 4.38932 4.50086 4.64938 4.71396 4.77892 4.84822 4.93979 4.97456 4.99069 5.04625 5.07317 5.12724 5.22939 5.24597 5.32087 5.33364 5.49951 5.56779 5.60463 5.65981 5.71976 5.80019 5.87121 6.06379 6.46341 7.32043 8.08196 8.47128 9.32268 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.018240 B = 0.012946 C = 0.008375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.685816 B = 2162.368233 C = 3342.623572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.158 4.158 3 H 0.086 0.914 4 C -0.196 4.196 5 C -0.086 4.086 6 H 0.068 0.932 7 C 0.209 3.791 8 N -0.603 5.603 9 C -0.233 4.233 10 H 0.067 0.933 11 C -0.049 4.049 12 N -0.901 5.901 13 Si 0.933 3.067 14 H -0.277 1.277 15 H -0.303 1.303 16 H -0.298 1.298 17 C 0.166 3.834 18 C -0.134 4.134 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.130 4.130 22 H 0.048 0.952 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.022 0.978 28 H 0.047 0.953 29 H 0.240 0.760 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.060 0.940 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.806 -3.689 6.304 8.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.176 4.176 3 H 0.104 0.896 4 C -0.233 4.233 5 C -0.106 4.106 6 H 0.086 0.914 7 C 0.083 3.917 8 N -0.323 5.323 9 C -0.362 4.362 10 H 0.085 0.915 11 C -0.244 4.244 12 N -0.548 5.548 13 Si 0.764 3.236 14 H -0.203 1.203 15 H -0.231 1.231 16 H -0.225 1.225 17 C 0.060 3.940 18 C -0.174 4.174 19 C -0.149 4.149 20 C -0.153 4.153 21 C -0.170 4.170 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.102 0.898 26 H 0.108 0.892 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.666 -3.618 6.249 8.598 hybrid contribution -0.589 0.438 -1.306 1.499 sum 4.077 -3.180 4.943 7.153 Atomic orbital electron populations 1.21150 0.93149 1.01131 1.00611 1.22136 0.95228 0.94051 1.06226 0.89606 1.23306 1.01974 1.01654 0.96364 1.22552 0.99372 0.99517 0.89195 0.91415 1.20222 0.90042 0.89810 0.91606 1.44464 1.54430 1.23433 1.10007 1.19209 1.15965 1.13578 0.87491 0.91544 1.25164 0.97081 1.02635 0.99506 1.70454 1.19474 1.31432 1.33464 0.85720 0.76444 0.76963 0.84484 1.20258 1.23115 1.22546 1.21168 0.89680 0.88401 0.94800 1.22805 0.97228 0.96832 1.00527 1.22396 0.96416 0.94158 1.01970 1.22247 0.95275 0.98676 0.99132 1.22522 0.98809 0.96436 0.99219 0.93270 0.91526 0.94166 0.89752 0.89248 0.96009 0.93428 0.95028 0.92258 0.93346 0.92069 0.90178 0.91307 0.90615 0.93637 0.92142 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.60 10.19 71.98 0.73 -2.87 16 2 C -0.16 -6.07 6.13 -10.79 -0.07 -6.13 16 3 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 4 C -0.20 -7.06 9.82 30.60 0.30 -6.76 16 5 C -0.09 -3.82 4.06 -10.79 -0.04 -3.86 16 6 H 0.07 3.61 7.53 -2.39 -0.02 3.59 16 7 C 0.21 9.87 5.17 86.38 0.45 10.31 16 8 N -0.60 -28.87 2.49 -674.00 -1.68 -30.55 16 9 C -0.23 -12.31 7.70 84.03 0.65 -11.66 16 10 H 0.07 3.55 7.57 -2.91 -0.02 3.53 16 11 C -0.05 -2.65 4.93 84.86 0.42 -2.23 16 12 N -0.90 -50.22 8.75 21.65 0.19 -50.03 16 13 Si 0.93 45.13 29.62 68.60 2.03 47.16 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 15 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 16 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 17 C 0.17 6.57 3.42 45.72 0.16 6.73 16 18 C -0.13 -4.71 6.40 31.67 0.20 -4.50 16 19 C -0.11 -3.12 6.91 31.89 0.22 -2.90 16 20 C -0.12 -3.58 6.83 31.67 0.22 -3.36 16 21 C -0.13 -4.83 6.22 31.32 0.19 -4.64 16 22 H 0.05 1.62 7.90 -2.39 -0.02 1.60 16 23 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.08 2.84 8.05 -2.39 -0.02 2.83 16 26 H 0.09 2.95 8.03 -2.39 -0.02 2.93 16 27 H 0.02 0.94 7.70 -2.39 -0.02 0.92 16 28 H 0.05 2.56 6.19 -2.39 -0.01 2.54 16 29 H 0.24 13.34 8.32 -92.71 -0.77 12.57 16 30 H 0.06 2.22 7.86 -2.38 -0.02 2.20 16 31 H 0.05 1.96 7.01 -2.39 -0.02 1.95 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.79 7.17 -2.39 -0.02 1.78 16 Total: -1.00 -56.61 296.55 4.96 -51.64 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.99 Total: 13.66 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.43 Total: -31.89 kcal Atomic # 7 Polarization: -79.09 SS G_CDS: -1.49 Total: -80.58 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -56.61 4.96 -51.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617099116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.457 kcal (2) G-P(sol) polarization free energy of solvation -56.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds