Wall clock time and date at job start Sun Mar 29 2020 21:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86797 * 119.99614 * 2 1 4 4 H 1.48498 * 109.47333 * 239.99663 * 3 2 1 5 5 H 1.48500 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47045 * 120.00183 * 3 2 1 7 7 C 1.38943 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99822 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00525 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00033 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00478 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99766 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.47028 * 179.97438 * 12 10 9 14 14 N 1.31865 * 119.63513 * 269.97634 * 13 12 10 15 15 C 1.31845 * 121.75130 * 179.67786 * 14 13 12 16 16 C 1.38238 * 120.81726 * 0.64271 * 15 14 13 17 17 C 1.38588 * 119.18753 * 359.39683 * 16 15 14 18 18 C 1.38413 * 119.63374 * 90.00169 * 13 12 10 19 19 F 1.35101 * 120.44736 * 359.97438 * 18 13 12 20 20 H 0.96998 * 119.99912 * 359.97438 * 1 2 3 21 21 H 0.96994 * 119.99330 * 359.97438 * 9 7 2 22 22 H 1.09002 * 109.46983 * 59.99781 * 12 10 9 23 23 H 1.08996 * 109.47122 * 299.99882 * 12 10 9 24 24 H 1.08000 * 119.59812 * 180.31887 * 15 14 13 25 25 H 1.08002 * 120.40978 * 179.67953 * 16 15 14 26 26 H 1.07999 * 120.80386 * 180.30037 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3907 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 6 2.2233 -6.0084 -0.0027 14 7 2.6467 -6.5037 -1.1491 15 6 3.5077 -7.5010 -1.1982 16 6 3.9916 -8.0767 -0.0383 17 6 3.5705 -7.5847 1.1870 18 6 2.6680 -6.5291 1.2002 19 9 2.2305 -6.0171 2.3714 20 1 -0.4850 0.8400 0.0004 21 1 0.3535 -2.3907 -0.0016 22 1 0.6176 -4.9205 -0.8924 23 1 0.6170 -4.9209 0.8875 24 1 3.8350 -7.8764 -2.1565 25 1 4.6928 -8.8967 -0.0863 26 1 3.9356 -8.0116 2.1094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619364336.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:20 Heat of formation + Delta-G solvation = -51.693006 kcal Electronic energy + Delta-G solvation = -14607.963765 eV Core-core repulsion = 11794.056627 eV Total energy + Delta-G solvation = -2813.907137 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.72515 -39.95462 -37.99767 -34.01962 -32.81777 -31.64500 -31.15140 -28.07170 -24.80013 -23.40343 -22.38868 -19.31196 -17.92608 -17.46137 -17.05821 -16.18897 -16.04289 -15.28502 -14.48017 -14.11960 -13.90345 -13.77183 -13.27460 -13.19355 -12.93974 -12.31037 -11.85538 -11.50257 -11.45470 -10.99068 -10.42876 -10.20679 -9.76677 -9.50063 -9.40385 -8.75362 -8.35654 -7.96847 -6.40509 -3.81546 1.09050 1.23521 3.21466 3.27044 3.31703 3.73093 3.89567 4.18511 4.22083 4.50058 4.73134 4.81904 5.01432 5.15182 5.27279 5.46130 5.76911 5.80859 5.95605 5.99294 6.19439 6.33835 6.78019 7.56330 8.03963 8.06385 8.60229 9.17492 9.53233 10.04198 10.77035 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.051531 B = 0.006381 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.230253 B = 4386.995386 C = 4471.233876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.024 3.976 3 Si 0.932 3.068 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.558 5.558 10 C 0.450 3.550 11 O -0.591 6.591 12 C -0.093 4.093 13 C 0.149 3.851 14 N -0.450 5.450 15 C 0.090 3.910 16 C -0.158 4.158 17 C -0.111 4.111 18 C 0.059 3.941 19 F -0.127 7.127 20 H 0.273 0.727 21 H 0.394 0.606 22 H 0.104 0.896 23 H 0.098 0.902 24 H 0.160 0.840 25 H 0.140 0.860 26 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.216 -13.826 0.866 14.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.194 5.194 10 C 0.235 3.765 11 O -0.476 6.476 12 C -0.134 4.134 13 C 0.009 3.991 14 N -0.158 5.158 15 C -0.068 4.068 16 C -0.178 4.178 17 C -0.138 4.138 18 C 0.037 3.963 19 F -0.106 7.106 20 H 0.082 0.918 21 H 0.228 0.772 22 H 0.123 0.877 23 H 0.116 0.884 24 H 0.177 0.823 25 H 0.158 0.842 26 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.553 -13.267 0.129 13.511 hybrid contribution 0.128 0.553 1.020 1.167 sum 2.681 -12.714 1.149 13.045 Atomic orbital electron populations 1.69609 1.05924 1.28326 1.50285 1.25268 0.95650 0.99718 0.97191 0.85905 0.78766 0.80381 0.79088 1.19867 1.20921 1.19891 1.19664 0.93360 0.82167 1.47796 0.87975 1.41801 1.09264 1.04406 1.63886 1.19447 0.88071 0.84286 0.84660 1.90531 1.13831 1.87182 1.56102 1.20521 0.96744 0.91171 1.04935 1.20827 0.96144 0.95110 0.86996 1.67518 1.10873 1.09695 1.27683 1.22776 0.93253 0.92062 0.98674 1.21966 1.01569 1.01866 0.92364 1.21566 0.96458 0.95689 1.00069 1.18525 0.98888 0.96396 0.82471 1.91510 1.87864 1.86075 1.45134 0.91758 0.77239 0.87740 0.88354 0.82256 0.84172 0.83868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.80 13.05 55.50 0.72 -24.07 15 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 15 3 Si 0.93 21.38 29.55 -169.99 -5.02 16.35 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.27 -6.24 7.11 56.52 0.40 -5.83 15 7 C -0.30 -8.58 9.68 -14.93 -0.14 -8.73 15 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 15 9 N -0.56 -14.63 5.29 -10.96 -0.06 -14.68 15 10 C 0.45 11.21 7.78 -10.99 -0.09 11.12 15 11 O -0.59 -16.88 15.61 5.55 0.09 -16.80 15 12 C -0.09 -1.78 5.82 -29.03 -0.17 -1.95 15 13 C 0.15 2.77 5.28 -82.51 -0.44 2.34 15 14 N -0.45 -7.97 10.27 -9.42 -0.10 -8.06 15 15 C 0.09 1.22 11.18 -17.55 -0.20 1.02 15 16 C -0.16 -1.83 10.11 -39.45 -0.40 -2.23 15 17 C -0.11 -1.48 10.16 -39.21 -0.40 -1.87 15 18 C 0.06 1.00 7.27 -39.28 -0.29 0.71 15 19 F -0.13 -2.25 16.49 2.25 0.04 -2.21 15 20 H 0.27 7.10 8.31 -40.82 -0.34 6.76 15 21 H 0.39 9.77 7.90 -40.82 -0.32 9.45 15 22 H 0.10 1.80 8.14 -51.93 -0.42 1.38 15 23 H 0.10 1.66 7.63 -51.93 -0.40 1.26 15 24 H 0.16 1.58 8.06 -52.49 -0.42 1.16 15 25 H 0.14 1.07 8.06 -52.49 -0.42 0.64 15 26 H 0.14 1.46 8.06 -52.49 -0.42 1.03 15 LS Contribution 247.67 15.07 3.73 3.73 Total: -1.00 -33.28 247.67 -4.73 -38.01 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -1.92 Total: 6.77 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -2.21 Total: 0.96 kcal Atomic # 7 Polarization: -47.39 SS G_CDS: 0.57 Total: -46.82 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: 0.09 Total: -16.80 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -33.28 -4.73 -38.01 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619364336.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.688 kcal (2) G-P(sol) polarization free energy of solvation -33.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds