Wall clock time and date at job start Sun Mar 29 2020 21:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31421 * 1 3 3 Si 1.86797 * 119.99614 * 2 1 4 4 H 1.48498 * 109.47333 * 239.99663 * 3 2 1 5 5 H 1.48500 * 109.47490 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47045 * 120.00183 * 3 2 1 7 7 C 1.38943 * 119.99928 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99822 * 179.97438 * 7 2 1 9 9 N 1.37103 * 120.00525 * 0.02562 * 7 2 1 10 10 C 1.34768 * 120.00033 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00478 * 359.97438 * 10 9 7 12 12 C 1.50707 * 119.99766 * 179.97438 * 10 9 7 13 13 C 1.50703 * 109.47028 * 179.97438 * 12 10 9 14 14 N 1.31865 * 119.63513 * 269.97634 * 13 12 10 15 15 C 1.31845 * 121.75130 * 179.67786 * 14 13 12 16 16 C 1.38238 * 120.81726 * 0.64271 * 15 14 13 17 17 C 1.38588 * 119.18753 * 359.39683 * 16 15 14 18 18 C 1.38413 * 119.63374 * 90.00169 * 13 12 10 19 19 F 1.35101 * 120.44736 * 359.97438 * 18 13 12 20 20 H 0.96998 * 119.99912 * 359.97438 * 1 2 3 21 21 H 0.96994 * 119.99330 * 359.97438 * 9 7 2 22 22 H 1.09002 * 109.46983 * 59.99781 * 12 10 9 23 23 H 1.08996 * 109.47122 * 299.99882 * 12 10 9 24 24 H 1.08000 * 119.59812 * 180.31887 * 15 14 13 25 25 H 1.08002 * 120.40978 * 179.67953 * 16 15 14 26 26 H 1.07999 * 120.80386 * 180.30037 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3235 -2.3907 -0.0016 10 6 1.9974 -3.5578 -0.0016 11 8 3.2103 -3.5578 -0.0011 12 6 1.2439 -4.8629 -0.0022 13 6 2.2233 -6.0084 -0.0027 14 7 2.6467 -6.5037 -1.1491 15 6 3.5077 -7.5010 -1.1982 16 6 3.9916 -8.0767 -0.0383 17 6 3.5705 -7.5847 1.1870 18 6 2.6680 -6.5291 1.2002 19 9 2.2305 -6.0171 2.3714 20 1 -0.4850 0.8400 0.0004 21 1 0.3535 -2.3907 -0.0016 22 1 0.6176 -4.9205 -0.8924 23 1 0.6170 -4.9209 0.8875 24 1 3.8350 -7.8764 -2.1565 25 1 4.6928 -8.8967 -0.0863 26 1 3.9356 -8.0116 2.1094 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619364336.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:20 Heat of formation + Delta-G solvation = -75.857005 kcal Electronic energy + Delta-G solvation = -14609.011594 eV Core-core repulsion = 11794.056627 eV Total energy + Delta-G solvation = -2814.954967 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.070 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.99960 -41.18371 -39.89776 -36.07556 -34.11705 -33.32359 -32.76349 -29.50215 -26.76608 -24.53761 -23.70164 -21.19619 -19.98753 -18.66918 -18.24221 -17.94412 -17.24710 -16.79255 -16.40840 -15.83500 -15.71585 -14.89052 -14.72688 -14.62293 -14.06780 -13.95110 -13.54156 -13.18731 -12.95546 -12.78420 -12.47175 -12.12965 -11.55503 -10.88730 -10.55813 -10.50457 -10.07429 -9.80037 -8.49732 -5.99820 -0.05548 0.15667 1.37859 1.40062 1.51748 1.97047 2.27052 2.58330 3.05906 3.15198 3.22863 3.40986 3.65032 3.79928 4.03115 4.34210 4.42157 4.48544 4.63132 4.80064 4.95664 5.04194 5.37229 5.68254 5.94239 6.52775 6.91124 7.06214 7.47528 8.02363 8.67436 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.051531 B = 0.006381 C = 0.006261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.230253 B = 4386.995386 C = 4471.233876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.996 3.004 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.078 0.922 9 N -0.566 5.566 10 C 0.447 3.553 11 O -0.632 6.632 12 C -0.082 4.082 13 C 0.111 3.889 14 N -0.483 5.483 15 C 0.081 3.919 16 C -0.134 4.134 17 C -0.108 4.108 18 C 0.030 3.970 19 F -0.140 7.140 20 H 0.280 0.720 21 H 0.398 0.602 22 H 0.119 0.881 23 H 0.116 0.884 24 H 0.195 0.805 25 H 0.192 0.808 26 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -15.075 0.769 15.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.211 4.211 3 Si 0.819 3.181 4 H -0.196 1.196 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.096 0.904 9 N -0.203 5.203 10 C 0.234 3.766 11 O -0.519 6.519 12 C -0.122 4.122 13 C -0.027 4.027 14 N -0.192 5.192 15 C -0.076 4.076 16 C -0.153 4.153 17 C -0.134 4.134 18 C 0.009 3.991 19 F -0.119 7.119 20 H 0.089 0.911 21 H 0.233 0.767 22 H 0.137 0.863 23 H 0.134 0.866 24 H 0.212 0.788 25 H 0.210 0.790 26 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 3.359 -14.523 0.038 14.906 hybrid contribution -0.074 0.803 1.008 1.291 sum 3.284 -13.719 1.046 14.146 Atomic orbital electron populations 1.69672 1.06871 1.29589 1.49684 1.26093 0.96601 1.02488 0.95907 0.84955 0.77788 0.76376 0.78996 1.19632 1.19144 1.19648 1.19648 0.92715 0.83921 1.50513 0.90373 1.41878 1.09417 1.04548 1.64412 1.20407 0.87935 0.85681 0.82547 1.90480 1.15906 1.88095 1.57469 1.20397 0.96874 0.88532 1.06439 1.20703 0.97744 0.96018 0.88223 1.67455 1.12599 1.11530 1.27658 1.23529 0.91979 0.90864 1.01253 1.22531 1.00398 1.01705 0.90694 1.22056 0.94805 0.94132 1.02391 1.18866 1.00514 0.98096 0.81645 1.91467 1.88271 1.86569 1.45613 0.91075 0.76731 0.86265 0.86616 0.78773 0.79038 0.80562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.55 13.05 21.66 0.28 -50.26 15 2 C -0.01 -0.59 5.50 84.92 0.47 -0.12 15 3 Si 1.00 43.76 29.55 68.60 2.03 45.78 15 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 5 H -0.27 -10.94 7.11 99.48 0.71 -10.24 15 6 H -0.27 -11.77 7.11 99.48 0.71 -11.07 15 7 C -0.34 -19.95 9.68 84.04 0.81 -19.14 15 8 H 0.08 4.89 7.16 -2.91 -0.02 4.87 15 9 N -0.57 -30.70 5.29 -306.99 -1.62 -32.33 15 10 C 0.45 23.02 7.78 87.66 0.68 23.70 15 11 O -0.63 -37.42 15.61 -3.06 -0.05 -37.47 15 12 C -0.08 -3.21 5.82 29.11 0.17 -3.04 15 13 C 0.11 4.16 5.28 42.60 0.22 4.38 15 14 N -0.48 -16.79 10.27 -183.72 -1.89 -18.68 15 15 C 0.08 1.98 11.18 84.69 0.95 2.93 15 16 C -0.13 -2.55 10.11 22.35 0.23 -2.32 15 17 C -0.11 -2.55 10.16 22.51 0.23 -2.32 15 18 C 0.03 1.02 7.27 22.47 0.16 1.18 15 19 F -0.14 -5.01 16.49 44.97 0.74 -4.27 15 20 H 0.28 14.36 8.31 -92.71 -0.77 13.59 15 21 H 0.40 20.37 7.90 -92.71 -0.73 19.64 15 22 H 0.12 4.19 8.14 -2.39 -0.02 4.17 15 23 H 0.12 4.00 7.63 -2.39 -0.02 3.98 15 24 H 0.20 3.13 8.06 -2.91 -0.02 3.10 15 25 H 0.19 1.67 8.06 -2.91 -0.02 1.64 15 26 H 0.18 2.90 8.06 -2.91 -0.02 2.87 15 Total: -1.00 -74.38 247.67 3.90 -70.48 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: 0.49 Total: 21.51 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 3.92 Total: 5.24 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -3.23 Total: -101.27 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.05 Total: -37.47 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.74 Total: -4.27 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -74.38 3.90 -70.48 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619364336.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.381 kcal (2) G-P(sol) polarization free energy of solvation -74.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds