Wall clock time and date at job start Sun Mar 29 2020 21:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38486 * 119.88246 * 2 1 4 4 C 1.38217 * 120.35128 * 180.28245 * 3 2 1 5 5 C 1.38303 * 120.12843 * 359.48133 * 4 3 2 6 6 F 1.35098 * 120.11810 * 180.23587 * 5 4 3 7 7 C 1.39921 * 119.76628 * 0.26143 * 5 4 3 8 8 C 1.47512 * 120.17199 * 180.02562 * 7 5 4 9 9 O 1.21521 * 119.99965 * 359.97438 * 8 7 5 10 10 O 1.34747 * 119.99960 * 179.97438 * 8 7 5 11 11 C 1.34856 * 117.00383 * 179.97438 * 10 8 7 12 12 H 1.08008 * 119.99665 * 0.02562 * 11 10 8 13 13 C 1.38806 * 120.00494 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99672 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00053 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47444 * 60.00359 * 15 13 11 17 17 H 1.48500 * 109.47293 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47484 * 300.00037 * 15 13 11 19 19 C 1.37819 * 119.88670 * 179.76489 * 2 1 3 20 20 H 1.08997 * 109.47024 * 270.23373 * 1 2 3 21 21 H 1.09000 * 109.46946 * 30.23547 * 1 2 3 22 22 H 1.09003 * 109.46676 * 150.23476 * 1 2 3 23 23 H 1.07993 * 119.82450 * 0.03947 * 3 2 1 24 24 H 1.08002 * 119.93878 * 179.76693 * 4 3 2 25 25 H 0.97003 * 120.00066 * 180.02562 * 14 13 11 26 26 H 1.08002 * 120.06594 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.2007 0.0000 4 6 3.5792 1.2121 -0.0059 5 6 4.2831 0.0216 -0.0010 6 9 5.6341 0.0329 -0.0019 7 6 3.5913 -1.1946 0.0044 8 6 4.3331 -2.4695 0.0102 9 8 5.5483 -2.4654 0.0099 10 8 3.6633 -3.6387 0.0159 11 6 4.4015 -4.7673 0.0205 12 1 5.4799 -4.7072 0.0199 13 6 3.7756 -6.0062 0.0270 14 7 2.4634 -6.0793 0.0282 15 14 4.7982 -7.5693 0.0341 16 1 5.6557 -7.5944 1.2462 17 1 3.8976 -8.7500 0.0399 18 1 5.6542 -7.6064 -1.1787 19 6 2.1938 -1.1949 0.0049 20 1 -0.3633 0.0042 1.0276 21 1 -0.3633 0.8879 -0.5175 22 1 -0.3633 -0.8921 -0.5102 23 1 1.6523 2.1332 0.0006 24 1 4.1105 2.1523 -0.0096 25 1 2.0259 -6.9451 0.0332 26 1 1.6530 -2.1298 0.0083 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727215707.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:02 Heat of formation + Delta-G solvation = -106.169774 kcal Electronic energy + Delta-G solvation = -14687.116179 eV Core-core repulsion = 11838.554000 eV Total energy + Delta-G solvation = -2848.562178 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.39631 -39.38192 -38.23971 -35.15420 -32.28485 -32.20103 -31.10850 -26.41331 -25.69301 -23.63702 -21.88566 -19.83610 -17.77610 -17.34442 -16.68053 -15.94575 -15.32012 -14.93471 -14.33705 -14.28088 -14.10887 -13.77185 -13.47473 -13.03336 -12.62241 -11.88464 -11.75268 -11.56187 -11.53414 -11.18549 -10.98079 -10.49253 -10.46556 -9.89345 -9.06518 -8.84595 -8.63114 -8.27253 -6.49887 -4.11774 1.04840 1.41397 3.11779 3.16192 3.20269 3.37527 3.86171 4.17190 4.38606 4.60506 4.86716 4.96289 5.10708 5.26286 5.35315 5.65755 5.70410 5.88971 6.01412 6.17090 6.25741 6.50339 6.61161 6.84144 7.09129 7.33632 7.88303 8.66099 8.98790 9.77858 10.67719 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.035500 B = 0.008019 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.542252 B = 3490.983701 C = 4264.381175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.114 4.114 3 C -0.081 4.081 4 C -0.167 4.167 5 C 0.139 3.861 6 F -0.120 7.120 7 C -0.120 4.120 8 C 0.429 3.571 9 O -0.542 6.542 10 O -0.203 6.203 11 C -0.373 4.373 12 H 0.098 0.902 13 C 0.042 3.958 14 N -0.859 5.859 15 Si 0.947 3.053 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.268 1.268 19 C -0.045 4.045 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.131 0.869 24 H 0.137 0.863 25 H 0.272 0.728 26 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.654 10.992 -0.030 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.114 4.114 3 C -0.099 4.099 4 C -0.186 4.186 5 C 0.119 3.881 6 F -0.098 7.098 7 C -0.123 4.123 8 C 0.276 3.724 9 O -0.440 6.440 10 O -0.110 6.110 11 C -0.449 4.449 12 H 0.115 0.885 13 C -0.163 4.163 14 N -0.495 5.495 15 Si 0.771 3.229 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.193 1.193 19 C -0.064 4.064 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.090 0.910 23 H 0.149 0.851 24 H 0.154 0.846 25 H 0.082 0.918 26 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.472 10.787 -0.031 11.677 hybrid contribution 0.758 -0.733 0.012 1.054 sum -3.714 10.054 -0.019 10.718 Atomic orbital electron populations 1.20753 0.90533 1.02928 1.02441 1.19917 0.96668 0.92669 1.02139 1.20942 0.92929 0.97848 0.98229 1.20975 0.94875 0.96542 1.06202 1.17720 0.77423 0.93018 0.99922 1.91559 1.28029 1.97202 1.92989 1.19545 0.94169 0.91157 1.07386 1.20471 0.86186 0.84978 0.80720 1.90689 1.14537 1.87862 1.50863 1.83876 1.39473 1.12756 1.74915 1.21294 0.91872 0.80433 1.51330 0.88454 1.25383 0.96238 0.98586 0.96090 1.69963 1.07946 1.26221 1.45402 0.85683 0.78790 0.78892 0.79510 1.19342 1.20267 1.19345 1.21431 0.92052 0.99092 0.93779 0.91121 0.91666 0.91025 0.85146 0.84550 0.91807 0.83251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.00 36.01 0.36 -0.82 15 2 C -0.11 -1.61 5.87 -104.68 -0.61 -2.22 15 3 C -0.08 -1.02 9.69 -39.50 -0.38 -1.41 15 4 C -0.17 -2.40 10.01 -39.56 -0.40 -2.80 15 5 C 0.14 2.66 7.29 -38.93 -0.28 2.38 15 6 F -0.12 -2.53 15.55 2.25 0.04 -2.49 15 7 C -0.12 -2.58 5.88 -104.92 -0.62 -3.20 15 8 C 0.43 11.48 7.83 34.51 0.27 11.75 15 9 O -0.54 -15.76 14.59 -19.28 -0.28 -16.04 15 10 O -0.20 -5.92 8.99 -21.69 -0.20 -6.12 15 11 C -0.37 -11.16 9.65 30.94 0.30 -10.86 15 12 H 0.10 2.93 6.86 -52.48 -0.36 2.57 15 13 C 0.04 1.17 5.49 -17.52 -0.10 1.07 15 14 N -0.86 -24.70 13.67 55.49 0.76 -23.94 15 15 Si 0.95 21.22 29.55 -169.99 -5.02 16.19 15 16 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 17 H -0.28 -5.92 7.11 56.52 0.40 -5.52 15 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 15 19 C -0.05 -0.82 9.26 -39.17 -0.36 -1.18 15 20 H 0.07 0.69 8.14 -51.93 -0.42 0.27 15 21 H 0.06 0.56 8.09 -51.93 -0.42 0.14 15 22 H 0.07 0.78 8.08 -51.93 -0.42 0.36 15 23 H 0.13 1.17 8.06 -52.49 -0.42 0.74 15 24 H 0.14 1.55 8.06 -52.49 -0.42 1.13 15 25 H 0.27 7.15 8.31 -40.82 -0.34 6.81 15 26 H 0.15 2.85 7.61 -52.49 -0.40 2.45 15 LS Contribution 247.86 15.07 3.74 3.74 Total: -1.00 -33.19 247.86 -4.80 -37.99 By element: Atomic # 1 Polarization: -0.04 SS G_CDS: -2.00 Total: -2.04 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: -1.82 Total: -7.28 kcal Atomic # 7 Polarization: -24.70 SS G_CDS: 0.76 Total: -23.94 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.48 Total: -22.16 kcal Atomic # 9 Polarization: -2.53 SS G_CDS: 0.04 Total: -2.49 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -33.19 -4.80 -37.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727215707.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.180 kcal (2) G-P(sol) polarization free energy of solvation -33.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds