Wall clock time and date at job start Sun Mar 29 2020 21:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38486 * 119.88246 * 2 1 4 4 C 1.38217 * 120.35128 * 180.28245 * 3 2 1 5 5 C 1.38303 * 120.12843 * 359.48133 * 4 3 2 6 6 F 1.35098 * 120.11810 * 180.23587 * 5 4 3 7 7 C 1.39921 * 119.76628 * 0.26143 * 5 4 3 8 8 C 1.47512 * 120.17199 * 180.02562 * 7 5 4 9 9 O 1.21521 * 119.99965 * 359.97438 * 8 7 5 10 10 O 1.34747 * 119.99960 * 179.97438 * 8 7 5 11 11 C 1.34856 * 117.00383 * 179.97438 * 10 8 7 12 12 H 1.08008 * 119.99665 * 0.02562 * 11 10 8 13 13 C 1.38806 * 120.00494 * 179.97438 * 11 10 8 14 14 N 1.31418 * 119.99672 * 0.02562 * 13 11 10 15 15 Si 1.86793 * 120.00053 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47444 * 60.00359 * 15 13 11 17 17 H 1.48500 * 109.47293 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47484 * 300.00037 * 15 13 11 19 19 C 1.37819 * 119.88670 * 179.76489 * 2 1 3 20 20 H 1.08997 * 109.47024 * 270.23373 * 1 2 3 21 21 H 1.09000 * 109.46946 * 30.23547 * 1 2 3 22 22 H 1.09003 * 109.46676 * 150.23476 * 1 2 3 23 23 H 1.07993 * 119.82450 * 0.03947 * 3 2 1 24 24 H 1.08002 * 119.93878 * 179.76693 * 4 3 2 25 25 H 0.97003 * 120.00066 * 180.02562 * 14 13 11 26 26 H 1.08002 * 120.06594 * 0.02562 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1970 1.2007 0.0000 4 6 3.5792 1.2121 -0.0059 5 6 4.2831 0.0216 -0.0010 6 9 5.6341 0.0329 -0.0019 7 6 3.5913 -1.1946 0.0044 8 6 4.3331 -2.4695 0.0102 9 8 5.5483 -2.4654 0.0099 10 8 3.6633 -3.6387 0.0159 11 6 4.4015 -4.7673 0.0205 12 1 5.4799 -4.7072 0.0199 13 6 3.7756 -6.0062 0.0270 14 7 2.4634 -6.0793 0.0282 15 14 4.7982 -7.5693 0.0341 16 1 5.6557 -7.5944 1.2462 17 1 3.8976 -8.7500 0.0399 18 1 5.6542 -7.6064 -1.1787 19 6 2.1938 -1.1949 0.0049 20 1 -0.3633 0.0042 1.0276 21 1 -0.3633 0.8879 -0.5175 22 1 -0.3633 -0.8921 -0.5102 23 1 1.6523 2.1332 0.0006 24 1 4.1105 2.1523 -0.0096 25 1 2.0259 -6.9451 0.0332 26 1 1.6530 -2.1298 0.0083 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727215707.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:01 Heat of formation + Delta-G solvation = -127.581516 kcal Electronic energy + Delta-G solvation = -14688.044661 eV Core-core repulsion = 11838.554000 eV Total energy + Delta-G solvation = -2849.490661 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.93774 -41.24422 -39.80762 -37.32135 -34.41885 -33.43402 -32.51974 -27.79815 -27.51226 -25.26937 -23.33144 -21.50639 -19.96866 -18.99894 -18.33934 -17.40577 -17.02571 -16.84935 -16.27070 -16.19764 -15.42571 -15.12183 -14.48538 -14.45399 -14.36327 -13.69331 -13.31990 -12.92079 -12.85440 -12.64600 -12.42207 -12.28036 -12.18475 -12.10012 -11.16528 -10.77229 -10.20232 -9.57319 -8.62966 -6.40510 -0.39463 0.12991 1.30690 1.34505 1.46962 1.69468 2.04021 2.57180 2.57944 2.94466 3.17025 3.65992 3.85022 4.08336 4.16258 4.45460 4.69100 4.87686 4.90205 4.92703 5.03410 5.12668 5.18671 5.31026 5.48636 5.73285 5.84033 6.50131 6.80628 7.61691 8.57300 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.035500 B = 0.008019 C = 0.006564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.542252 B = 3490.983701 C = 4264.381175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.049 4.049 4 C -0.147 4.147 5 C 0.114 3.886 6 F -0.140 7.140 7 C -0.164 4.164 8 C 0.425 3.575 9 O -0.577 6.577 10 O -0.227 6.227 11 C -0.426 4.426 12 H 0.080 0.920 13 C 0.001 3.999 14 N -0.893 5.893 15 Si 1.021 2.979 16 H -0.262 1.262 17 H -0.253 1.253 18 H -0.262 1.262 19 C -0.057 4.057 20 H 0.086 0.914 21 H 0.101 0.899 22 H 0.062 0.938 23 H 0.191 0.809 24 H 0.178 0.822 25 H 0.283 0.717 26 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.351 13.184 -0.028 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.101 4.101 3 C -0.066 4.066 4 C -0.166 4.166 5 C 0.094 3.906 6 F -0.119 7.119 7 C -0.166 4.166 8 C 0.275 3.725 9 O -0.477 6.477 10 O -0.135 6.135 11 C -0.501 4.501 12 H 0.097 0.903 13 C -0.200 4.200 14 N -0.530 5.530 15 Si 0.839 3.161 16 H -0.186 1.186 17 H -0.177 1.177 18 H -0.186 1.186 19 C -0.075 4.075 20 H 0.104 0.896 21 H 0.120 0.880 22 H 0.081 0.919 23 H 0.208 0.792 24 H 0.195 0.805 25 H 0.093 0.907 26 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.197 13.004 -0.029 14.405 hybrid contribution 1.165 -1.165 0.011 1.648 sum -5.032 11.839 -0.018 12.864 Atomic orbital electron populations 1.20874 0.87501 1.04376 1.03847 1.20362 0.98697 0.91505 0.99574 1.21641 0.92172 0.99293 0.93517 1.21474 0.95744 0.95864 1.03471 1.18201 0.76834 0.93940 1.01589 1.91500 1.29680 1.97318 1.93397 1.19457 0.95484 0.89271 1.12403 1.21620 0.86397 0.86185 0.78338 1.90623 1.16262 1.88573 1.52240 1.83901 1.39950 1.13484 1.76132 1.21485 0.91559 0.81828 1.55213 0.90250 1.26595 0.97730 1.01453 0.94250 1.70034 1.09565 1.27893 1.45462 0.84654 0.77395 0.74259 0.79818 1.18628 1.17668 1.18636 1.21357 0.90709 1.00380 0.95084 0.89591 0.88028 0.91855 0.79160 0.80480 0.90745 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.88 10.00 71.24 0.71 -1.16 15 2 C -0.10 -2.53 5.87 -19.90 -0.12 -2.64 15 3 C -0.05 -0.94 9.69 22.32 0.22 -0.73 15 4 C -0.15 -3.64 10.01 22.28 0.22 -3.42 15 5 C 0.11 4.35 7.29 22.69 0.17 4.52 15 6 F -0.14 -6.12 15.55 44.97 0.70 -5.42 15 7 C -0.16 -7.35 5.88 -20.06 -0.12 -7.47 15 8 C 0.42 24.52 7.83 70.27 0.55 25.07 15 9 O -0.58 -36.18 14.59 19.77 0.29 -35.89 15 10 O -0.23 -14.27 8.99 11.16 0.10 -14.17 15 11 C -0.43 -27.13 9.65 67.96 0.66 -26.47 15 12 H 0.08 5.17 6.86 -2.91 -0.02 5.15 15 13 C 0.00 0.07 5.49 84.89 0.47 0.53 15 14 N -0.89 -52.95 13.67 21.63 0.30 -52.66 15 15 Si 1.02 44.23 29.55 68.60 2.03 46.25 15 16 H -0.26 -10.99 7.11 99.48 0.71 -10.28 15 17 H -0.25 -9.88 7.11 99.48 0.71 -9.18 15 18 H -0.26 -10.99 7.11 99.48 0.71 -10.29 15 19 C -0.06 -2.10 9.26 22.54 0.21 -1.89 15 20 H 0.09 1.29 8.14 -2.39 -0.02 1.27 15 21 H 0.10 1.07 8.09 -2.39 -0.02 1.05 15 22 H 0.06 1.22 8.08 -2.39 -0.02 1.21 15 23 H 0.19 1.64 8.06 -2.91 -0.02 1.62 15 24 H 0.18 2.99 8.06 -2.91 -0.02 2.97 15 25 H 0.28 15.07 8.31 -92.71 -0.77 14.30 15 26 H 0.13 5.17 7.61 -2.91 -0.02 5.14 15 Total: -1.00 -80.16 247.86 7.58 -72.58 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.20 Total: 2.97 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 2.96 Total: -13.67 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.30 Total: -52.66 kcal Atomic # 8 Polarization: -50.45 SS G_CDS: 0.39 Total: -50.06 kcal Atomic # 9 Polarization: -6.12 SS G_CDS: 0.70 Total: -5.42 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -80.16 7.58 -72.58 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727215707.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.004 kcal (2) G-P(sol) polarization free energy of solvation -80.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds